mRNA_M-pyrifera_M_contig8377.19558.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8377.19558.1
Unique NamemRNA_M-pyrifera_M_contig8377.19558.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8377.19558.1 vs. uniprot
Match: D7G5D7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D7_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 3.750e-45
Identity = 84/176 (47.73%), Postives = 115/176 (65.34%), Query Frame = 3 
Query:    3 DEVALAALASAKDTAAKQTKKKRK-RADPFMPKGSVAPIEWQDFTPLDKGCRAHLVIVHTGLPDDQAVATGIISRIKERFGGLVNVHEEVDQDEEVTDEDRRKSNAFEVWLEGPEIIMYHARGECEMDITEEIIVEMLDDIHDRVQDEAILGLYCSQRMMFRLAGLTPKEQKSKQF 527
            DE A+AAL        K+ K+  K R DP MP+G VAP EW D   L +G R  LV+ HTGLP D+  A  I++ +KER+G +++ HE  D DEE+TD+DR  +  FEVWLEGP I+ YH R + ++D+ +E + ++LDD+ +RV DEAILG Y ++   FRL G T  EQ+ KQF
Sbjct:   81 DEAAMAALGP------KRKKRVEKARIDPLMPRGGVAPNEWLDMADLAEGVRGILVVCHTGLPKDKKRAAEIMNAVKERYGHVIHTHEWWDDDEELTDDDREDAGTFEVWLEGPTIVHYHERADGKLDLDDEQLDKILDDLEERVMDEAILGQYINEDFQFRLPGFTVPEQRFKQF 250
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BLAST of mRNA_M-pyrifera_M_contig8377.19558.1 vs. uniprot
Match: A0A6H5JXG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXG7_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 4.800e-45
Identity = 82/175 (46.86%), Postives = 116/175 (66.29%), Query Frame = 3 
Query:    3 DEVALAALASAKDTAAKQTKKKRKRADPFMPKGSVAPIEWQDFTPLDKGCRAHLVIVHTGLPDDQAVATGIISRIKERFGGLVNVHEEVDQDEEVTDEDRRKSNAFEVWLEGPEIIMYHARGECEMDITEEIIVEMLDDIHDRVQDEAILGLYCSQRMMFRLAGLTPKEQKSKQF 527
            DEVA+AAL   +   A++      R DP MP+G VAP EW D   L +G R  LV+ HTGLP D+  AT +++ +KER+G +++ HE  D DEE+TD+DR  +  FEVWLEGP ++ YH R + ++D+ +E + ++LDD+ +RV DEAILG Y ++   FRL G T  EQ+ KQF
Sbjct:  198 DEVAMAALGPKRKKRAEKV-----RVDPLMPRGGVAPNEWLDMANLAEGVRGILVVCHTGLPKDKKRATEVMNAVKERYGHVIHTHEWWDDDEELTDDDREDAGTFEVWLEGPTVVHYHERADGKLDLDDEQLDKILDDLEERVMDEAILGQYINEDFQFRLPGFTVPEQRFKQF 367
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8377.19558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5D7_ECTSI3.750e-4547.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXG7_9PHAE4.800e-4546.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8377contigM-pyrifera_M_contig8377:6298..9699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_008690.1
Exons3
Model size712
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8377.19558.1prot_M-pyrifera_M_contig8377.19558.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8377 6471..9610 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816745.5116239-UTR-M-pyrifera_M_contig8377:6297..64701622816745.5116239-UTR-M-pyrifera_M_contig8377:6297..6470Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8377 6298..6470 -
1692278153.1369762-UTR-M-pyrifera_M_contig8377:6297..64701692278153.1369762-UTR-M-pyrifera_M_contig8377:6297..6470Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8377 6298..6470 -
1622816745.5677083-UTR-M-pyrifera_M_contig8377:9610..96991622816745.5677083-UTR-M-pyrifera_M_contig8377:9610..9699Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8377 9611..9699 -
1692278153.1935234-UTR-M-pyrifera_M_contig8377:9610..96991692278153.1935234-UTR-M-pyrifera_M_contig8377:9610..9699Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8377 9611..9699 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816745.5232148-CDS-M-pyrifera_M_contig8377:6470..67551622816745.5232148-CDS-M-pyrifera_M_contig8377:6470..6755Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8377 6471..6755 -
1692278153.147924-CDS-M-pyrifera_M_contig8377:6470..67551692278153.147924-CDS-M-pyrifera_M_contig8377:6470..6755Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8377 6471..6755 -
1622816745.5357306-CDS-M-pyrifera_M_contig8377:8721..88111622816745.5357306-CDS-M-pyrifera_M_contig8377:8721..8811Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8377 8722..8811 -
1692278153.1619878-CDS-M-pyrifera_M_contig8377:8721..88111692278153.1619878-CDS-M-pyrifera_M_contig8377:8721..8811Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8377 8722..8811 -
1622816745.5498633-CDS-M-pyrifera_M_contig8377:9535..96101622816745.5498633-CDS-M-pyrifera_M_contig8377:9535..9610Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8377 9536..9610 -
1692278153.180052-CDS-M-pyrifera_M_contig8377:9535..96101692278153.180052-CDS-M-pyrifera_M_contig8377:9535..9610Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8377 9536..9610 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8377.19558.1

>prot_M-pyrifera_M_contig8377.19558.1 ID=prot_M-pyrifera_M_contig8377.19558.1|Name=mRNA_M-pyrifera_M_contig8377.19558.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
MPKGSVAPIEWQDFTPLDKGCRAHLVIVHTGLPDDQAVATGIISRIKERF
GGLVNVHEEVDQDEEVTDEDRRKSNAFEVWLEGPEIIMYHARGECEMDIT
EEIIVEMLDDIHDRVQDEAILGLYCSQRMMFRLAGLTPKEQKSKQFFPL*
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mRNA from alignment at M-pyrifera_M_contig8377:6298..9699-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8377.19558.1 ID=mRNA_M-pyrifera_M_contig8377.19558.1|Name=mRNA_M-pyrifera_M_contig8377.19558.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3402bp|location=Sequence derived from alignment at M-pyrifera_M_contig8377:6298..9699- (Macrocystis pyrifera P11B4 male)
CTGACGAGGTAGCCTTGGCTGCGTTAGCCTCTGCGAAGGACACGGCGGCC
AAGCAAACCAAGAAGAAGAGGAAGAGGGCTGACCCCTTCATGCCCAAGGG
GTCTGTGGCGCCCATCGAGTGGCAGGATTTCACGCCCCTTGACAAGGGCT
GCCGGGCGCACTTGGTGAGAGCGGTGACGTCGCTGTGTGAACGGGGCTGG
GTTAACTCTAGTACTACTGTGCTGGGACGAGGACCGCTTGACCGTCAGGG
GAGCATGCACGAGTGTTAGGGTTTGTTACGAAGTGATGCCGTGCCTGGCA
CAACCTTGGGGGGGGGGGTGACATTGGTGCCTTCGAAGCGCTCATGTTTT
CTCTTTTCATTCACACCCGACAATATCGCGGTGTACGCTGTGCGGTGTGC
GTATGCATGCCGGACGTATAAGGCGTGCCCCTAAATTGACTTGCAGTGGG
GTAAGTAAGTGCCTAGTACCATACCCTGTTCTTATTAATAGGAACAGTTC
GACTTGGTATTTTGGCAAGGCCGCGCAGCGTATCTTGAGCGTGCCTTGAG
TCACAAGACAGTGTAGATTTGCCACATGTCGTGCGGTTTCCCCTCAGGGT
ACGATAAGTGATGTCCACAAAGTACTGGGCGCACCCGACGGTGTTTTTGA
AAGTCAACAGTAGGCTGACGTTGTCCCTACGAACATGGTGAGGCGCCCAT
GTGGTCGCGCCAATCTGCGTCGCATCGTATTCGCTCGGGTTCATGTCCAA
CCTACACCAGGTTTTCAAAGATGACCAGACTCCGGGTGTGTCGTGTTGTC
GTGTTACGTCGAATCTGCCACGAGTTTTTCTTAAGGTGTCGAAACCTCTT
GTCTCAACCTATACCGCCACGCTCTCGTGCATCGCCAGGTTATCGTCCAC
ACGGGATTGCCTGATGACCAGGCTGTGGCTACCGGCATCATCAGCCGGAT
CAAGGAACGCTTCGGGGGCCTCGTAAACGTGAGTGGTAGTGAGTTGGCTT
TATTCGAAGCCTGGCGGCAAAGTGTCATGGTATTTTGATACCGGCATCAT
GCAGCGCATTGAACTATGCTACATACCTGGCATGAGAACGGTATCTCACT
GACGTCAATGCATGCCACGATGGGGGTGCATCTAATGTTTTATGAAGCCC
CTCACTTGAGGTCTTATACCCCCACCGAAAACCTAGCCATGAGAGAGGGG
GAAATGAACGTGCAACCAGATGGACAATGAATGCCATGGCCTACTGCTGT
AGGTATGTACCCAAAAGTAGAAGGAAAGGCCAAGATATGTTTCAGCGATA
CAGTGGTGTACCCTCTTTAAGGGGACGCTGGCACCCAAGCGTCCCCTCGT
TCCCGGGTTTCCGGTCACTCTAATATCTAGATGCTTTATCGGAACAGAAA
AACTCATCGCTAGGTCAACACGCTGCGTTTACAACTTCGGCTGGTTCGTG
CTTACCAGAGAGTGACGGTGACTTCAAAGAGGTTCATCACGGCAGCTTGT
GTTTCTCTCGAGATTGATCTCCCGCCCGTTCTCAACCGAGGCCTACATCT
CGACTTAGAGGTGCTGCAGTCGTCGAAATTGGTCGAAATTTGGGGTGCAC
AACATGAGACTAAAACCAACCCCCAACTGAACGTTTGCACCTACCTCACT
TGCGGACAGCTACAGCTCCTCACAAGATGCTGCATGCAGCCCGCGAAATT
GAGGGATGCTCTTGGTGGGATGTGTGAGGGTATCGAGTGCGCCAGACGGC
AGTTGTAGGCACCCAGAAGCGACTCACGAGATGTTTTCGTGTACTCGAAG
TTGCGAGCGAGTATTAATAGCGCGAAAAGCTCGCAAAAACGTTATTAATG
AAATGTTTCATTTTCCGTAGGGGAGCGTAGCACAATGGCTACATCAACGA
TGAAGCAATGGCCTTCACTATAATGTTGCTATTCTTCAGGCGGATGATAT
ATCTTTTAGAGAGTCGTCGTCGAACATGGGGCGGGAGGAAAACTTTGTTA
CGATGATGGGTAGTAGTTTCTTGGACCCAAAAAAGGGCCAACAGGGGCTG
AAAAGCTCATGATTCTTGTAATTTTGCATCATCTATTCTACAACTACGAA
ATACGGATCCTGGTTGCAAATCCCTTACTCTAATTCCAAGTCGTATGCAT
ATGCTGCCGAAACGCCTACGCGCGGGAACTTGACGACGCATTCCTGAGGG
TGCCAGCGTCCCTTTAAGGCCCTTCGGTTCAATACTTTCGGCTAGGTAAT
ACCAGGGAATCAGCCTGTCACGAGAAAAAGATAATCTGCTTGGGATTTCG
TACTTAGTTCGTATGGGGTCATTTTCTCAGTAACAAAAGATAACACCACT
TACATCGCCGTGTCCGGAGGTGGTATTGACCCTTTTAGGAGCGCAGTCCC
GTTTTGCCGACAAGCTACTTGCAGTATTAGTTGACTGCTTTGTCCCCAAA
ACAGGACTGCAGTTCTAAAAGAGTTCATGTGGGAAACTCCTCAGTTGAGG
ACCCCCGTCTTTCAGAAACGTGTTGGCGTTAGCTCTTTTAGTACTGCAGT
CCCGTTTTGAAGACAAACTCCTTAGAAATTGAATGGTTTGTCCCCGAAAT
GGGACTGTATTCCTAGAAGGGTTAAAGGGCCACGATAGTGCCCCTGCCGT
GACTCGCGTCTGCCGTCGGAAGTTTGAAAAAGGGGTGAATATATGCGTGG
CGTGCGAGTTGCTTCCCTCCCTCGTCTCCCTGGACACCTTTGCGCGGCAG
GCTTGTGATAGGAAAAAAAAACAAAATGCTGTTCGCTTCTTTTCATCATC
GTCCTCCTCGGGTCGCTTGACCGTTTGGGTTGACACACAAAACATACACC
AAAAATATTAATAGCACGTTTTTCTGAAGGGTTTTAGGTGTTGAAGTCTA
CTGCCACCCTGCGTGCCCCGACGAAAATTGCCAACGTTCGACAGGTGCAC
GAGGAGGTCGACCAAGACGAAGAGGTCACGGACGAGGACCGCCGAAAGTC
TAACGCCTTCGAAGTTTGGCTCGAGGGGCCGGAGATCATCATGTACCACG
CCAGGGGCGAGTGCGAGATGGACATCACGGAGGAGATCATCGTCGAGATG
CTTGATGACATCCACGATCGCGTTCAGGACGAGGCCATTCTGGGGCTCTA
CTGCAGCCAAAGAATGATGTTTCGATTGGCAGGGCTCACCCCGAAGGAGC
AGAAGTCAAAGCAGTTCTTCCCCTTGTAACGTCTTCTGGCGTGGGGCTCC
CGCGTGTCTCTGGCGCGTTGTTGGCGGGCGTCGTAGGATTGCAGGCGAAT
AGTACGTAGCCTCCCCGGGTTCGGTATTTTGTATTTTGTGGAGGGCAGGG
AAGGTTGCTGTTTTTCTGTTCGCGCCGGCAAATTAAGTATGATCCAACCC
TA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8377:6298..9699-

>mRNA_M-pyrifera_M_contig8377.19558.1 ID=mRNA_M-pyrifera_M_contig8377.19558.1|Name=mRNA_M-pyrifera_M_contig8377.19558.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig8377:6298..9699- (Macrocystis pyrifera P11B4 male)
ATGCCCAAGGGGTCTGTGGCGCCCATCGAGTGGCAGGATTTCACGCCCCT
TGACAAGGGCTGCCGGGCGCACTTGATGCCCAAGGGGTCTGTGGCGCCCA
TCGAGTGGCAGGATTTCACGCCCCTTGACAAGGGCTGCCGGGCGCACTTG
GTTATCGTCCACACGGGATTGCCTGATGACCAGGCTGTGGCTACCGGCAT
CATCAGCCGGATCAAGGAACGCTTCGGGGGCCTCGTAAACGTTATCGTCC
ACACGGGATTGCCTGATGACCAGGCTGTGGCTACCGGCATCATCAGCCGG
ATCAAGGAACGCTTCGGGGGCCTCGTAAACGTGCACGAGGAGGTCGACCA
AGACGAAGAGGTCACGGACGAGGACCGCCGAAAGTCTAACGCCTTCGAAG
TTTGGCTCGAGGGGCCGGAGATCATCATGTACCACGCCAGGGGCGAGTGC
GAGATGGACATCACGGAGGAGATCATCGTCGAGATGCTTGATGACATCCA
CGATCGCGTTCAGGACGAGGCCATTCTGGGGCTCTACTGCAGCCAAAGAA
TGATGTTTCGATTGGCAGGGCTCACCCCGAAGGAGCAGAAGTCAAAGCAG
TTCTTCCCCTTGTAAGTGCACGAGGAGGTCGACCAAGACGAAGAGGTCAC
GGACGAGGACCGCCGAAAGTCTAACGCCTTCGAAGTTTGGCTCGAGGGGC
CGGAGATCATCATGTACCACGCCAGGGGCGAGTGCGAGATGGACATCACG
GAGGAGATCATCGTCGAGATGCTTGATGACATCCACGATCGCGTTCAGGA
CGAGGCCATTCTGGGGCTCTACTGCAGCCAAAGAATGATGTTTCGATTGG
CAGGGCTCACCCCGAAGGAGCAGAAGTCAAAGCAGTTCTTCCCCTTGTAA
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