mRNA_M-pyrifera_M_contig8377.19557.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8377.19557.1
Unique NamemRNA_M-pyrifera_M_contig8377.19557.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8377.19557.1 vs. uniprot
Match: D7G5D8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D8_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 3.110e-26
Identity = 106/155 (68.39%), Postives = 112/155 (72.26%), Query Frame = 1 
Query:   37 PSGRLWPYTAGLVDGILAGSRASLSRAITLVESHRLDHRRQAELLLDKVISARQAAPIRPRPPQPNGASTTNSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGNGSRD-------GVVGEFPELGMRVGIAGPPGAGKSSFIEV 480
            PS  LWP TA LVDGILAGSRASLSRAITLVESHRLDHRRQAELLLD+++SAR  A                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       +G RD          G FP+LGMR+GIAGPPGAGKSSFIEV
Sbjct:  119 PSSSLWPSTADLVDGILAGSRASLSRAITLVESHRLDHRRQAELLLDRLLSARHQAGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAEGLASSGRRDCSSGRLVAATGGFPKLGMRLGIAGPPGAGKSSFIEV 273
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BLAST of mRNA_M-pyrifera_M_contig8377.19557.1 vs. uniprot
Match: A0A5A8E155_CAFRO (AAA domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E155_CAFRO)

HSP 1 Score: 59.7 bits (143), Expect = 1.850e-7
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   49 LWPYTAGLVDGILAGSRASLSRAITLVESHRLDHRRQAELLLDKVISARQA 201
            + P T  L  G++AG R SLSRAITL+ES R +HRRQAELLLD V+  R++
Sbjct:   36 IQPATQALAQGVMAGDRRSLSRAITLIESSREEHRRQAELLLDAVLERRRS 86
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BLAST of mRNA_M-pyrifera_M_contig8377.19557.1 vs. uniprot
Match: A0A418WDM2_9PROT (Methylmalonyl Co-A mutase-associated GTPase MeaB n=1 Tax=Oleomonas cavernae TaxID=2320859 RepID=A0A418WDM2_9PROT)

HSP 1 Score: 57.0 bits (136), Expect = 1.400e-6
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   25 AASPPSGRLWP---YTAGLVDGILAGSRASLSRAITLVESHRLDHRRQAELLLDKVISA 192
            A S P+G+  P   +TA L DGILAG R +L+RAITLVES R DHR QA  LL++++ A
Sbjct:    3 AGSSPAGQKAPISHHTASLADGILAGQRRALARAITLVESTRADHRAQASRLLERLLPA 61
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BLAST of mRNA_M-pyrifera_M_contig8377.19557.1 vs. uniprot
Match: A0A543GH83_9PSEU (LAO/AO transport system kinase n=5 Tax=Pseudonocardia TaxID=1847 RepID=A0A543GH83_9PSEU)

HSP 1 Score: 53.5 bits (127), Expect = 2.180e-5
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   64 AGLVDGILAGSRASLSRAITLVESHRLDHRRQAELLLDKVI 186
            AGLV G+LAGSRA L+RAITLVESHR DHR  A+ +L +++
Sbjct:    8 AGLVKGVLAGSRAVLARAITLVESHRTDHREAAQQMLMELL 48
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BLAST of mRNA_M-pyrifera_M_contig8377.19557.1 vs. uniprot
Match: A0A2D4BST0_PYTIN (LAO/AO transport system ATPase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BST0_PYTIN)

HSP 1 Score: 52.8 bits (125), Expect = 4.170e-5
Identity = 45/146 (30.82%), Postives = 59/146 (40.41%), Query Frame = 1 
Query:   49 LWPYTAGLVDGILAGSRASLSRAITLVESHRLDHRRQAELLLDKVISARQAAPIRPRPPQPNGASTTNSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGNGSRDGVVGEFPELGM---RVGIAGPPGAGKSSFIE 477
            + P T  LV+G++AG+R +LSRAITL ES      +QAEL+LD V+  R+ A                                                             R G   +   LG+   R+GIAGPPGAGKS+FIE
Sbjct:    1 MLPSTQRLVEGVIAGNRTALSRAITLAESSLKRDEQQAELMLDTVLKKRRDA-------------------------------------------------------------RHGHARQSSSLGLPSFRLGIAGPPGAGKSTFIE 85
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BLAST of mRNA_M-pyrifera_M_contig8377.19557.1 vs. uniprot
Match: A0A6I7PNY9_9PROT (Methylmalonyl Co-A mutase-associated GTPase MeaB n=1 Tax=Geminicoccaceae bacterium TaxID=2448052 RepID=A0A6I7PNY9_9PROT)

HSP 1 Score: 52.4 bits (124), Expect = 5.550e-5
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   70 LVDGILAGSRASLSRAITLVESHRLDHRRQAELLLDKVI 186
            L++G+LAG RASL+RAITLVES R DHR QA  LL+ V+
Sbjct:   15 LIEGVLAGERASLARAITLVESRREDHRTQARKLLEAVL 53
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BLAST of mRNA_M-pyrifera_M_contig8377.19557.1 vs. uniprot
Match: A0A8K1CFL8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFL8_PYTOL)

HSP 1 Score: 52.4 bits (124), Expect = 5.740e-5
Identity = 51/156 (32.69%), Postives = 63/156 (40.38%), Query Frame = 1 
Query:   10 ATAAGAASPPSGRLWPYTAGLVDGILAGSRASLSRAITLVESHRLDHRRQAELLLDKVISARQAAPIRPRPPQPNGASTTNSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGNGSRDGVVGEFPELGMRVGIAGPPGAGKSSFIE 477
            ATAA A       + P T  LV+G+ AG+R +LSRAITLVES       QAELLLD+V+  R+   IR                                                         +R   +   P    R+GIAGPPGAGKS+FIE
Sbjct:    2 ATAADAGEDAVAEMLPITKKLVEGVTAGNRTALSRAITLVESTLKSDGEQAELLLDEVLKRRRD--IR---------------------------------------------------------NRQTKLQALPSF--RLGIAGPPGAGKSTFIE 96
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8377.19557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G5D8_ECTSI3.110e-2668.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5A8E155_CAFRO1.850e-758.82AAA domain-containing protein n=3 Tax=Cafeteria ro... [more]
A0A418WDM2_9PROT1.400e-655.93Methylmalonyl Co-A mutase-associated GTPase MeaB n... [more]
A0A543GH83_9PSEU2.180e-565.85LAO/AO transport system kinase n=5 Tax=Pseudonocar... [more]
A0A2D4BST0_PYTIN4.170e-530.82LAO/AO transport system ATPase n=1 Tax=Pythium ins... [more]
A0A6I7PNY9_9PROT5.550e-566.67Methylmalonyl Co-A mutase-associated GTPase MeaB n... [more]
A0A8K1CFL8_PYTOL5.740e-532.69Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8377contigM-pyrifera_M_contig8377:276..1714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue1.4e-22
Seed eggNOG ortholog2880.D7G5D8
Preferred nameMMAA
KEGG koko:K07588
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009235,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0017144,GO:0019001,GO:0031974,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033013,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046983,GO:0051186,GO:0070013,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901564
EggNOG free text desc.cobalamin biosynthetic process
EggNOG OGs2QR2W@2759,COG1703@1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons3
Model size480
Cds size480
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8377.19557.1prot_M-pyrifera_M_contig8377.19557.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8377 276..1714 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816745.4167714-CDS-M-pyrifera_M_contig8377:275..3701622816745.4167714-CDS-M-pyrifera_M_contig8377:275..370Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8377 276..370 -
1692278153.090887-CDS-M-pyrifera_M_contig8377:275..3701692278153.090887-CDS-M-pyrifera_M_contig8377:275..370Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8377 276..370 -
1622816745.427356-CDS-M-pyrifera_M_contig8377:490..7481622816745.427356-CDS-M-pyrifera_M_contig8377:490..748Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8377 491..748 -
1692278153.1058512-CDS-M-pyrifera_M_contig8377:490..7481692278153.1058512-CDS-M-pyrifera_M_contig8377:490..748Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8377 491..748 -
1622816745.4385414-CDS-M-pyrifera_M_contig8377:1587..17141622816745.4385414-CDS-M-pyrifera_M_contig8377:1587..1714Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8377 1588..1714 -
1692278153.1249795-CDS-M-pyrifera_M_contig8377:1587..17141692278153.1249795-CDS-M-pyrifera_M_contig8377:1587..1714Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8377 1588..1714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8377.19557.1

>prot_M-pyrifera_M_contig8377.19557.1 ID=prot_M-pyrifera_M_contig8377.19557.1|Name=mRNA_M-pyrifera_M_contig8377.19557.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
PSGATAAGAASPPSGRLWPYTAGLVDGILAGSRASLSRAITLVESHRLDH
RRQAELLLDKVISARQAAPIRPRPPQPNGASTTNSPANSSSSSSSSSSND
ISHASGTDTGTSGGGNSRSSSNSTTGNGSRDGVVGEFPELGMRVGIAGPP
GAGKSSFIEV
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mRNA from alignment at M-pyrifera_M_contig8377:276..1714-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8377.19557.1 ID=mRNA_M-pyrifera_M_contig8377.19557.1|Name=mRNA_M-pyrifera_M_contig8377.19557.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1439bp|location=Sequence derived from alignment at M-pyrifera_M_contig8377:276..1714- (Macrocystis pyrifera P11B4 male)
CCCTCAGGCGCCACAGCAGCAGGCGCTGCTTCTCCTCCTTCTGGACGGCT
GTGGCCTTACACAGCGGGCTTGGTCGACGGCATCCTTGCCGGTAGCAGGG
CCTCTCTGAGTCGTGCGATAACGCTTGGTGGGTGGTGGCGATGGTGGGGG
TATAGAGAGAAGGTTACAACTCACACGCCTGACAGATCACCTACATATCA
TCTATAGGTCATCTACAGATAATCTGCAGATCGTTCCCACTTTCTAGATA
TTTCGGAGCAACAGATGTGCGCATGATCTGCGCATGATCTATAGCCTATA
GGTAATGTTGTCGGGTGGGAGCCGTAAGACATGTGCATGGTCTGCAGAGT
TTGGCATGCTCCCTGGTGTGGACCTGCGTATACACCGGTCCTGCTCTGAA
TCTCACAACGGTTAGGTTAAGATTTGCGTACCGGCAGGTTAAGATCTGTT
TGGACCCGTATCTACGCAGATCTTTCACAACATCTCACAATGGCACGTTA
AGCTCTGTTTGGATACGTTTATACACAGATCCCGCGCAGCATATCGTAAC
GGCAGGTTAGGATCTGTATGATCTATCTGTAGATCGTCGTCTGTGGAACG
ATTGATGAATGGGACTTTGGCGGCCCGACAAGCGTAGTCGGTGACGTGCG
TATGACCACATGATGACATTTTTTTATGTCCGTCACCCGTCTACAAAACG
GTGTACGTGCGCTGTTGTCTACCCAGGCACCTGTCTGTCACCTACCACCC
TGGACAGAAATGTAGGGACCGTTGTTATTCATATTTAAGGTCTAAATGAT
CCTTATATTTCTGTCCAGAGCTCTTAACCAGAATGGCATGTCGGGATTGG
CATTTGTTTTAAGCATTTGGTCCCCCCCCCGCCCCCCGCCCCCACCCCGC
GTCGCCCCCACCTCGCCGTCTCTTGCTCGCTCCCAACACCGAACCGATGC
GAACACTTACCAACAGTGGAGTCGCACCGGCTGGACCACAGGCGCCAGGC
AGAGCTCCTTCTCGACAAGGTCATCTCCGCCCGACAAGCAGCGCCCATCC
GGCCGCGCCCCCCGCAGCCGAACGGCGCCAGCACGACCAACAGCCCCGCC
AACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACGACATCAGCCATGC
CAGTGGCACCGACACCGGTACTAGTGGTGGGGGTAACAGCAGGAGCAGCA
GCAACAGCACTACTGGTAACGGTAGTAGCAGCAGCTCCAGACCCGACGGG
GCGCTCGAAGCTCCCGCGGGCGAAGGCGGCGGCGGCGGCGGCGGCGGTGG
GGGGGTGGGCATGACATCGCGTGGGCCCGGGCTTGCACGGCAAGGCAGGG
ACGGCGTTGTTGGCGAATTTCCGGAGTTGGGGATGAGGGTGGGCATCGCC
GGCCCTCCAGGCGCAGGAAAATCTTCCTTCATTGAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8377:276..1714-

>mRNA_M-pyrifera_M_contig8377.19557.1 ID=mRNA_M-pyrifera_M_contig8377.19557.1|Name=mRNA_M-pyrifera_M_contig8377.19557.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig8377:276..1714- (Macrocystis pyrifera P11B4 male)
CCCTCAGGCGCCACAGCAGCAGGCGCTGCTTCTCCTCCTTCTGGACGGCT
GTGGCCTTACACAGCGGGCTTGGTCGACGGCATCCTTGCCGGTAGCAGGG
CCTCTCTGAGTCGTGCGATAACGCTTGCCCTCAGGCGCCACAGCAGCAGG
CGCTGCTTCTCCTCCTTCTGGACGGCTGTGGCCTTACACAGCGGGCTTGG
TCGACGGCATCCTTGCCGGTAGCAGGGCCTCTCTGAGTCGTGCGATAACG
CTTGTGGAGTCGCACCGGCTGGACCACAGGCGCCAGGCAGAGCTCCTTCT
CGACAAGGTCATCTCCGCCCGACAAGCAGCGCCCATCCGGCCGCGCCCCC
CGCAGCCGAACGGCGCCAGCACGACCAACAGCCCCGCCAACAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAACGACATCAGCCATGCCAGTGGCACCGA
CACCGGTACTAGTGGTGGGGGTAACAGCAGGAGCAGCAGCAACAGCACTA
CTGGTAACGGTATGGAGTCGCACCGGCTGGACCACAGGCGCCAGGCAGAG
CTCCTTCTCGACAAGGTCATCTCCGCCCGACAAGCAGCGCCCATCCGGCC
GCGCCCCCCGCAGCCGAACGGCGCCAGCACGACCAACAGCCCCGCCAACA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACGACATCAGCCATGCCAGT
GGCACCGACACCGGTACTAGTGGTGGGGGTAACAGCAGGAGCAGCAGCAA
CAGCACTACTGGTAACGGTAGCAGGGACGGCGTTGTTGGCGAATTTCCGG
AGTTGGGGATGAGGGTGGGCATCGCCGGCCCTCCAGGCGCAGGAAAATCT
TCCTTCATTGAGGTGGCAGGGACGGCGTTGTTGGCGAATTTCCGGAGTTG
GGGATGAGGGTGGGCATCGCCGGCCCTCCAGGCGCAGGAAAATCTTCCTT
CATTGAGGTG
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