mRNA_M-pyrifera_M_contig8368.19543.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8368.19543.1
Unique NamemRNA_M-pyrifera_M_contig8368.19543.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8368.19543.1 vs. uniprot
Match: D8LQX3_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQX3_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 5.200e-53
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 1 
Query:    1 FGTYKLIYRRYAGLFFTFGMDTNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 273
            +GTYKLIYRRYAGLFFTFGMD NDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREIL+RIRE+EKLD
Sbjct:   53 YGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 143
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BLAST of mRNA_M-pyrifera_M_contig8368.19543.1 vs. uniprot
Match: A0A835YZE0_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZE0_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.300e-46
Identity = 77/89 (86.52%), Postives = 86/89 (96.63%), Query Frame = 1 
Query:    7 TYKLIYRRYAGLFFTFGMDTNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 273
            +YK+IYRRYAGLFFT G+D NDNELLALETVHLFVELL+SYFSNVCELDIVFNFNKVYNILDEFILSGEV+ES+K EIL+R+RELEKL+
Sbjct:   55 SYKIIYRRYAGLFFTLGVDVNDNELLALETVHLFVELLDSYFSNVCELDIVFNFNKVYNILDEFILSGEVQESAKPEILDRVRELEKLE 143
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BLAST of mRNA_M-pyrifera_M_contig8368.19543.1 vs. uniprot
Match: A0A7S2CS13_9STRA (AP complex subunit sigma n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CS13_9STRA)

HSP 1 Score: 145 bits (367), Expect = 4.790e-43
Identity = 71/91 (78.02%), Postives = 83/91 (91.21%), Query Frame = 1 
Query:    1 FGTYKLIYRRYAGLFFTFGMDTNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 273
            F  YKL+YRRYAGLFFT G+D NDNELL LET+HLFVELL+ YFSNVCELDIVFNFNKVY ILDEFIL+GE++E+SK+EILERI+E+EK +
Sbjct:   56 FMNYKLVYRRYAGLFFTIGIDVNDNELLYLETIHLFVELLDQYFSNVCELDIVFNFNKVYGILDEFILAGEIQETSKKEILERIKEVEKRE 146
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BLAST of mRNA_M-pyrifera_M_contig8368.19543.1 vs. uniprot
Match: A0A7S3L6S1_9STRA (AP complex subunit sigma n=2 Tax=Bacillariophycidae TaxID=33850 RepID=A0A7S3L6S1_9STRA)

HSP 1 Score: 140 bits (353), Expect = 7.500e-41
Identity = 68/91 (74.73%), Postives = 83/91 (91.21%), Query Frame = 1 
Query:    1 FGTYKLIYRRYAGLFFTFGMDTNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 273
            + +YKLIYRRYAGLFFT  +D  DNEL  LET+HLFVELL+SYFSNVCELDIVFNFNKVY+ILDEF+L+GE+EE+SKREIL+R++ LEK++
Sbjct:   63 YNSYKLIYRRYAGLFFTIAVDVTDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNKVYSILDEFMLAGELEETSKREILDRVKMLEKME 153
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BLAST of mRNA_M-pyrifera_M_contig8368.19543.1 vs. uniprot
Match: A0A6T8NVY6_9STRA (AP complex subunit sigma n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8NVY6_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.650e-40
Identity = 68/91 (74.73%), Postives = 81/91 (89.01%), Query Frame = 1 
Query:    1 FGTYKLIYRRYAGLFFTFGMDTNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 273
            +  YKLIYRRYAGLFFT  +D  DNEL  LET+HLFVELL+SYFSNVCELDIVFNFN+VY ILDEF+L+GE+EE+SKREILER++ +EK+D
Sbjct:   66 YNNYKLIYRRYAGLFFTIAVDMTDNELNYLETIHLFVELLDSYFSNVCELDIVFNFNRVYAILDEFMLAGEIEETSKREILERVKVIEKMD 156
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BLAST of mRNA_M-pyrifera_M_contig8368.19543.1 vs. uniprot
Match: A0A7S0KX33_9STRA (AP complex subunit sigma n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KX33_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.900e-40
Identity = 69/91 (75.82%), Postives = 82/91 (90.11%), Query Frame = 1 
Query:    1 FGTYKLIYRRYAGLFFTFGMDTNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 273
            +  YKLIYRRYAGLFFT  +D+ DNEL  LETVHLFVELL+SYFSNVCELDIVF+FNKVY ILDEF+L+GE+EE+SKREILER++ LEK++
Sbjct:   59 YNNYKLIYRRYAGLFFTIAVDSTDNELSYLETVHLFVELLDSYFSNVCELDIVFHFNKVYTILDEFMLAGEMEETSKREILERVKFLEKME 149
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BLAST of mRNA_M-pyrifera_M_contig8368.19543.1 vs. uniprot
Match: A0A1Z5K077_FISSO (AP complex subunit sigma n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K077_FISSO)

HSP 1 Score: 138 bits (348), Expect = 4.070e-40
Identity = 66/91 (72.53%), Postives = 83/91 (91.21%), Query Frame = 1 
Query:    1 FGTYKLIYRRYAGLFFTFGMDTNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 273
            +  YKLIYRRYAGLFFT  +D NDNEL  LET+HLFVELL+SYF+NVCELDIVF+FNKVY+ILDEF+L+GE+EE+SKREIL+R++ L+K++
Sbjct:   61 YNNYKLIYRRYAGLFFTIAVDVNDNELSYLETIHLFVELLDSYFNNVCELDIVFHFNKVYSILDEFMLAGEIEETSKREILDRVKLLDKME 151
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BLAST of mRNA_M-pyrifera_M_contig8368.19543.1 vs. uniprot
Match: A0A7S0FJC4_9STRA (AP complex subunit sigma n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FJC4_9STRA)

HSP 1 Score: 138 bits (347), Expect = 5.600e-40
Identity = 67/91 (73.63%), Postives = 82/91 (90.11%), Query Frame = 1 
Query:    1 FGTYKLIYRRYAGLFFTFGMDTNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 273
            + +YKLIYRRYAGLFFT  +D  DNEL  LET+HLFVELL+SYFSNVCELDIVFNFN+VY ILDE+IL+GE+EE+SK+EIL+R++ LEKL+
Sbjct:   60 YASYKLIYRRYAGLFFTIAVDITDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNRVYMILDEYILAGEIEETSKKEILDRVKVLEKLE 150
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BLAST of mRNA_M-pyrifera_M_contig8368.19543.1 vs. uniprot
Match: A0A024GMS7_9STRA (AP complex subunit sigma n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GMS7_9STRA)

HSP 1 Score: 139 bits (349), Expect = 5.850e-40
Identity = 69/91 (75.82%), Postives = 83/91 (91.21%), Query Frame = 1 
Query:    1 FGTYKLIYRRYAGLFFTFGMDTNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 273
            F +YKLIYRRYAGLFF  G+D + NELL+LET+HLFVELL+  FSNVCELDIVFNFNKVY++LDE+IL GEV+E+SKRE+L+RIRELEKL+
Sbjct:   85 FRSYKLIYRRYAGLFFILGVDLHANELLSLETIHLFVELLDQQFSNVCELDIVFNFNKVYSMLDEYILGGEVQETSKREMLDRIRELEKLE 175
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BLAST of mRNA_M-pyrifera_M_contig8368.19543.1 vs. uniprot
Match: B8C940_THAPS (AP complex subunit sigma (Fragment) n=2 Tax=Thalassiosira TaxID=35127 RepID=B8C940_THAPS)

HSP 1 Score: 137 bits (346), Expect = 6.250e-40
Identity = 66/91 (72.53%), Postives = 82/91 (90.11%), Query Frame = 1 
Query:    1 FGTYKLIYRRYAGLFFTFGMDTNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 273
            +  YKLIYRRYAGLFFT  +D  DNEL  LE++HLFVELL+SYF+NVCELDIVFNFNKVY+ILDE++L+GE+EE+SK+EIL+R++ LEKLD
Sbjct:   52 YNNYKLIYRRYAGLFFTIAVDVQDNELSYLESIHLFVELLDSYFANVCELDIVFNFNKVYSILDEYMLAGEIEETSKKEILDRVKFLEKLD 142
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8368.19543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQX3_ECTSI5.200e-5395.60AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YZE0_9STRA1.300e-4686.52AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
A0A7S2CS13_9STRA4.790e-4378.02AP complex subunit sigma n=1 Tax=Dictyocha speculu... [more]
A0A7S3L6S1_9STRA7.500e-4174.73AP complex subunit sigma n=2 Tax=Bacillariophycida... [more]
A0A6T8NVY6_9STRA1.650e-4074.73AP complex subunit sigma n=1 Tax=Proboscia inermis... [more]
A0A7S0KX33_9STRA1.900e-4075.82AP complex subunit sigma n=1 Tax=Asterionellopsis ... [more]
A0A1Z5K077_FISSO4.070e-4072.53AP complex subunit sigma n=1 Tax=Fistulifera solar... [more]
A0A7S0FJC4_9STRA5.600e-4073.63AP complex subunit sigma n=1 Tax=Minutocellus poly... [more]
A0A024GMS7_9STRA5.850e-4075.82AP complex subunit sigma n=1 Tax=Albugo candida Ta... [more]
B8C940_THAPS6.250e-4072.53AP complex subunit sigma (Fragment) n=2 Tax=Thalas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8368contigM-pyrifera_M_contig8368:689..1622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.8
Seed ortholog evalue1.5e-40
Seed eggNOG ortholog2880.D8LQX3
Preferred nameap2s1
KEGG koko:K11481,ko:K11827
KEGG Pathwayko04114,ko04144,ko04721,ko04914,ko04961,ko05016,map04114,map04144,map04721,map04914,map04961,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0002119,GO:0002164,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005628,GO:0005634,GO:0005737,GO:0005886,GO:0005905,GO:0005933,GO:0005935,GO:0005938,GO:0006810,GO:0006886,GO:0006897,GO:0006898,GO:0007275,GO:0008104,GO:0008150,GO:0008565,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0010171,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030122,GO:0030125,GO:0030128,GO:0030131,GO:0030132,GO:0030135,GO:0030136,GO:0030139,GO:0030276,GO:0030427,GO:0030659,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0031090,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034613,GO:0042763,GO:0042764,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0045334,GO:0046907,GO:0048475,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0071944,GO:0072583,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098797,GO:0098805,GO:0099568
EggNOG free text desc.protein transporter activity
EggNOG OGsCOG5030@1,KOG0935@2759
EC2.7.11.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko03036,ko04131
Exons2
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816744.6069-CDS-M-pyrifera_M_contig8368:688..8621622816744.6069-CDS-M-pyrifera_M_contig8368:688..862Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8368 689..862 +
1692278152.5696533-CDS-M-pyrifera_M_contig8368:688..8621692278152.5696533-CDS-M-pyrifera_M_contig8368:688..862Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8368 689..862 +
1622816744.6182535-CDS-M-pyrifera_M_contig8368:1520..16221622816744.6182535-CDS-M-pyrifera_M_contig8368:1520..1622Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8368 1521..1622 +
1692278152.5812392-CDS-M-pyrifera_M_contig8368:1520..16221692278152.5812392-CDS-M-pyrifera_M_contig8368:1520..1622Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8368 1521..1622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8368.19543.1prot_M-pyrifera_M_contig8368.19543.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8368 689..1622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8368.19543.1

>prot_M-pyrifera_M_contig8368.19543.1 ID=prot_M-pyrifera_M_contig8368.19543.1|Name=mRNA_M-pyrifera_M_contig8368.19543.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
FGTYKLIYRRYAGLFFTFGMDTNDNELLALETVHLFVELLESYFSNVCEL
DIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD*
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mRNA from alignment at M-pyrifera_M_contig8368:689..1622+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8368.19543.1 ID=mRNA_M-pyrifera_M_contig8368.19543.1|Name=mRNA_M-pyrifera_M_contig8368.19543.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=934bp|location=Sequence derived from alignment at M-pyrifera_M_contig8368:689..1622+ (Macrocystis pyrifera P11B4 male)
TTCGGGACGTACAAGCTGATCTACCGGCGGTACGCCGGTCTGTTTTTCAC
CTTCGGAATGGACACCAACGACAACGAACTCCTCGCGCTGGAGACCGTTC
ACCTCTTCGTGGAGCTCCTGGAGTCGTACTTTTCCAACGTGTGCGAGCTG
GATATCGTCTTCAACTTCAACAAGGTGGACGAATGAACGTGCCTATAACC
TGTGTTGCATCACTGTATGATAGTCAACACCTGCTGGATAACTTTACTGA
ATTAGTGTTGAAGATGCAAAGCAAGCGTCAATGAATGGAATTGGCTTGCT
TTCCCCTAGTAAAGGTGTTCGTTCATACCTAAGGTTGTGGACGCAGGATT
TTGTTTTTTGACGAAAAACATCGTTAAGGCCGGCACGCAGGCAGGTTCGT
CCCCAGAGGCAGGTTCCTCGGCACCTTGCAGTGCGTGCCTCACGTCGTCC
TTTGATGCAATCTGGTTGAAGATAACACGGCTGTGAAAATGAAGTATATA
ACGTTGAAATTACGCTACGGTCCGTCAGCAAAAGTGCAATACTCCCGTTA
AACAGGAAGAGACGACCAAAATAACATGTAGCTTATTAACACATGCTTCG
TGTTGTTTGTATTTGTAAATAGCATAAAAGCGACAGCTGTTGGTGAAGTA
AATGAGGATTACTCTGCACCTCCGATTGCCCGTATTAACATCACGGTTGC
GGCTTATTCATGTCTCTTTCTTTCACCCGCTTTTTGCCGCTCCATATTGT
CGGTTTCACGTTCTGACAATGTTTTTTTTTCGCTTGCTGCGTTCTGCATT
TTCTGGGAACGTTCCGAATCACATCACTGCAGGTGTACAATATATTGGAC
GAGTTCATTCTCAGCGGAGAGGTGGAGGAGAGCAGCAAGCGAGAGATACT
CGAGCGAATCAGAGAGCTGGAAAAATTGGATTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8368:689..1622+

>mRNA_M-pyrifera_M_contig8368.19543.1 ID=mRNA_M-pyrifera_M_contig8368.19543.1|Name=mRNA_M-pyrifera_M_contig8368.19543.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig8368:689..1622+ (Macrocystis pyrifera P11B4 male)
TTCGGGACGTACAAGCTGATCTACCGGCGGTACGCCGGTCTGTTTTTCAC
CTTCGGAATGGACACCAACGACAACGAACTCCTCGCGCTGGAGACCGTTC
ACCTCTTCGTGGAGCTCCTGGAGTCGTACTTTTCCAACGTGTGCGAGCTG
GATATCGTCTTCAACTTCAACAAGTTCGGGACGTACAAGCTGATCTACCG
GCGGTACGCCGGTCTGTTTTTCACCTTCGGAATGGACACCAACGACAACG
AACTCCTCGCGCTGGAGACCGTTCACCTCTTCGTGGAGCTCCTGGAGTCG
TACTTTTCCAACGTGTGCGAGCTGGATATCGTCTTCAACTTCAACAAGGT
GTACAATATATTGGACGAGTTCATTCTCAGCGGAGAGGTGGAGGAGAGCA
GCAAGCGAGAGATACTCGAGCGAATCAGAGAGCTGGAAAAATTGGATTGA
GTGTACAATATATTGGACGAGTTCATTCTCAGCGGAGAGGTGGAGGAGAG
CAGCAAGCGAGAGATACTCGAGCGAATCAGAGAGCTGGAAAAATTGGATT
GA
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