mRNA_M-pyrifera_M_contig83643.19538.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83643.19538.1
Unique NamemRNA_M-pyrifera_M_contig83643.19538.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83643.19538.1 vs. uniprot
Match: A0A1D6JR96_MAIZE (Ras-related protein Rab-6A n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6JR96_MAIZE)

HSP 1 Score: 145 bits (365), Expect = 4.640e-41
Identity = 76/135 (56.30%), Postives = 97/135 (71.85%), Query Frame = 1 
Query:    1 VAPLAKFKLVFLGDQSVGKTSLIKSFMYGTFDARYQVSVVAWKLTREGGLAFCCIASKLFPAPSPSTPLSAPSHLLQTTIGIDFMSKTIYLDDRTVRVQIWDTAGQERFRSLIPSYIRDSSVAIVVYDITRKLSF 405
            V+ LAK+KLVFLG+Q+VGKT++I  FMY  FD  YQ   +   L+ +        A+    A      +SAP  ++Q TIGIDF+SKT+YL+DRTVR+Q+WDTAGQERFRSLIPSYIRDSSVA++VYD+T  L F
Sbjct:    4 VSALAKYKLVFLGNQAVGKTAIITRFMYDKFDDTYQAGSLLLNLSSKSDSDLWVRAAAAAAA------ISAPPCVMQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVTGILIF 132
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BLAST of mRNA_M-pyrifera_M_contig83643.19538.1 vs. uniprot
Match: A0A7S0FKM4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FKM4_9STRA)

HSP 1 Score: 138 bits (347), Expect = 9.560e-40
Identity = 74/135 (54.81%), Postives = 85/135 (62.96%), Query Frame = 1 
Query:    1 VAPLAKFKLVFLGDQSVGKTSLIKSFMYGTFDARYQVSVVAWKLTREGGLAFCCIASKLFPAPSPSTPLSAPSHLLQTTIGIDFMSKTIYLDDRTVRVQIWDTAGQERFRSLIPSYIRDSSVAIVVYDITRKLSF 405
            +APLAK+KLVFLGDQSVGKTS+I  FMY  FD  YQ                                          TIGIDF+SKT+YL+DRTVR+Q+WDTAGQERFRSLIPSYIRDSSVA+VVYD+T + SF
Sbjct:    3 LAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDRHYQA-----------------------------------------TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVTNRASF 96
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BLAST of mRNA_M-pyrifera_M_contig83643.19538.1 vs. uniprot
Match: A0A2Z6N0C7_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6N0C7_TRISU)

HSP 1 Score: 138 bits (348), Expect = 1.000e-39
Identity = 77/129 (59.69%), Postives = 92/129 (71.32%), Query Frame = 1 
Query:    1 VAPLAKFKLVFLGDQSVGKTSLIKSFMYGTFDARYQVSVVAWKLTREGGLAFCCIASKLFPAPSPSTPLSAPSHLLQTTIGIDFMSKTIYLDDRTVRVQIWDTAGQERFRSLIPSYIRDSSVAIVVYDI 387
            V+ LAK+KLVFLGDQSVGKTS+I  FMY  FD  YQ +    + T  G +  C  + KL    S          L+  TIGIDF+SKT+YL+DRTVR+Q+WDTAGQERFRSLIPSYIRDSSVA+VVYD+
Sbjct:    4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQRAYGNKRKTAYGYVISC--SHKLSQTVS--------QVLMPATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV 122
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BLAST of mRNA_M-pyrifera_M_contig83643.19538.1 vs. uniprot
Match: UPI00092F5C5C (ras-related protein RABH1e-like isoform X1 n=2 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092F5C5C)

HSP 1 Score: 141 bits (356), Expect = 1.550e-39
Identity = 78/135 (57.78%), Postives = 95/135 (70.37%), Query Frame = 1 
Query:    1 VAPLAKFKLVFLGDQSVGKTSLIKSFMYGTFDARYQVSVVAWKLTREGGLAFCCIASKLFPAPSPSTPLSAPSHLLQTTIGIDFMSKTIYLDDRTVRVQIWDTAGQERFRSLIPSYIRDSSVAIVVYDITRKLSF 405
            ++PLAKFKLVFLGDQSVGKTS+I  FMY  FD  YQVS           L+F  I +      S S P +      Q TIGIDF+SKT+Y++DR +R+Q+WDTAGQERFRSLIPSYIRDS+VA++VYDI  + SF
Sbjct:    4 ISPLAKFKLVFLGDQSVGKTSIITRFMYDKFDITYQVSYFF--------LSFNSIYNNN--NYSDSVPFNI--FKFQATIGIDFLSKTMYIEDRAIRLQLWDTAGQERFRSLIPSYIRDSAVAVIVYDIANRQSF 126
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BLAST of mRNA_M-pyrifera_M_contig83643.19538.1 vs. uniprot
Match: A0A4V4H2W0_MUSBA (Uncharacterized protein n=2 Tax=Musaceae TaxID=4637 RepID=A0A4V4H2W0_MUSBA)

HSP 1 Score: 140 bits (354), Expect = 3.190e-39
Identity = 79/135 (58.52%), Postives = 92/135 (68.15%), Query Frame = 1 
Query:    1 VAPLAKFKLVFLGDQSVGKTSLIKSFMYGTFDARYQVSVVAWKLTREGGLAFCCIASKLFPAPSPSTPLSAPSHLLQTTIGIDFMSKTIYLDDRTVRVQIWDTAGQERFRSLIPSYIRDSSVAIVVYDITRKLSF 405
            V+ LAK+KLVFLGDQSVGKTS+I  FMY  FD  YQV   A KL       FC    +L P                 TIGIDF+SKT+YL+DRTVR+Q+WDTAGQERFRSLIPSYIRDSSVA++VYD++ K  F
Sbjct:    4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQVLGSAAKL-------FC--GRELGPG---------------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVSSKYCF 114
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BLAST of mRNA_M-pyrifera_M_contig83643.19538.1 vs. uniprot
Match: A0A7S1TP34_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TP34_9STRA)

HSP 1 Score: 139 bits (349), Expect = 4.900e-39
Identity = 75/135 (55.56%), Postives = 84/135 (62.22%), Query Frame = 1 
Query:    1 VAPLAKFKLVFLGDQSVGKTSLIKSFMYGTFDARYQVSVVAWKLTREGGLAFCCIASKLFPAPSPSTPLSAPSHLLQTTIGIDFMSKTIYLDDRTVRVQIWDTAGQERFRSLIPSYIRDSSVAIVVYDITRKLSF 405
            +APLAK+KLVFLGDQ+VGKTS+I  FMY  FD  YQ                                          TIGIDF+SKT+YLDDRTVR+Q+WDTAGQERFRSLIPSYIRDSSVA+VVYDIT   SF
Sbjct:   16 IAPLAKYKLVFLGDQNVGKTSIITRFMYDNFDKNYQA-----------------------------------------TIGIDFLSKTMYLDDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNSASF 109
[Close]
BLAST of mRNA_M-pyrifera_M_contig83643.19538.1 vs. uniprot
Match: A0A836CM24_9STRA (Rab6, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM24_9STRA)

HSP 1 Score: 139 bits (351), Expect = 5.540e-39
Identity = 76/135 (56.30%), Postives = 85/135 (62.96%), Query Frame = 1 
Query:    1 VAPLAKFKLVFLGDQSVGKTSLIKSFMYGTFDARYQVSVVAWKLTREGGLAFCCIASKLFPAPSPSTPLSAPSHLLQTTIGIDFMSKTIYLDDRTVRVQIWDTAGQERFRSLIPSYIRDSSVAIVVYDITRKLSF 405
            VAPLAK+KLVFLGDQSVGKTS+I  FMY  FD  YQ                                          TIGIDF+SKT+YL+DRTVR+Q+WDTAGQERFRSLIPSYIRDSSVA+VVYDIT + SF
Sbjct:   19 VAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQA-----------------------------------------TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASF 112
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BLAST of mRNA_M-pyrifera_M_contig83643.19538.1 vs. uniprot
Match: A0A2P6NNP1_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NNP1_9EUKA)

HSP 1 Score: 139 bits (349), Expect = 8.890e-39
Identity = 76/135 (56.30%), Postives = 86/135 (63.70%), Query Frame = 1 
Query:    1 VAPLAKFKLVFLGDQSVGKTSLIKSFMYGTFDARYQVSVVAWKLTREGGLAFCCIASKLFPAPSPSTPLSAPSHLLQTTIGIDFMSKTIYLDDRTVRVQIWDTAGQERFRSLIPSYIRDSSVAIVVYDITRKLSF 405
            V PLAK+KLVFLGDQSVGKTS+I  FMY TFD+ YQ                                          TIGIDF+SKT+YL+DRTVR+Q+WDTAGQERFRSLIPSYIRDSSVA+VVYDIT + SF
Sbjct:    8 VNPLAKYKLVFLGDQSVGKTSIITRFMYDTFDSTYQA-----------------------------------------TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRNSF 101
[Close]
BLAST of mRNA_M-pyrifera_M_contig83643.19538.1 vs. uniprot
Match: T0QYI2_SAPDV (Ras-like protein Rab-6A n=4 Tax=Saprolegniaceae TaxID=4764 RepID=T0QYI2_SAPDV)

HSP 1 Score: 139 bits (349), Expect = 9.660e-39
Identity = 75/135 (55.56%), Postives = 85/135 (62.96%), Query Frame = 1 
Query:    1 VAPLAKFKLVFLGDQSVGKTSLIKSFMYGTFDARYQVSVVAWKLTREGGLAFCCIASKLFPAPSPSTPLSAPSHLLQTTIGIDFMSKTIYLDDRTVRVQIWDTAGQERFRSLIPSYIRDSSVAIVVYDITRKLSF 405
            +APLAK+KLVFLGDQ VGKTS+I  FMY TFD  YQ                                          TIGIDF+SKT+YL+DRTVR+Q+WDTAGQERFRSLIPSYIRDSSVA+VVYDIT + SF
Sbjct:   12 IAPLAKYKLVFLGDQGVGKTSMITRFMYDTFDNAYQA-----------------------------------------TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASF 105
[Close]
BLAST of mRNA_M-pyrifera_M_contig83643.19538.1 vs. uniprot
Match: D7FMQ4_ECTSI (Rab6, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMQ4_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.050e-38
Identity = 74/135 (54.81%), Postives = 85/135 (62.96%), Query Frame = 1 
Query:    1 VAPLAKFKLVFLGDQSVGKTSLIKSFMYGTFDARYQVSVVAWKLTREGGLAFCCIASKLFPAPSPSTPLSAPSHLLQTTIGIDFMSKTIYLDDRTVRVQIWDTAGQERFRSLIPSYIRDSSVAIVVYDITRKLSF 405
            +APLAK+KLVFLGDQSVGKTS+I  FMY  FD  YQ                                          TIGIDF+SKT+YL+DRTVR+Q+WDTAGQERFRSLIPSYIRDSSVA++VYDIT + SF
Sbjct:   16 IAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQA-----------------------------------------TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASF 109
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83643.19538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1D6JR96_MAIZE4.640e-4156.30Ras-related protein Rab-6A n=2 Tax=Zea mays TaxID=... [more]
A0A7S0FKM4_9STRA9.560e-4054.81Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A2Z6N0C7_TRISU1.000e-3959.69Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
UPI00092F5C5C1.550e-3957.78ras-related protein RABH1e-like isoform X1 n=2 Tax... [more]
A0A4V4H2W0_MUSBA3.190e-3958.52Uncharacterized protein n=2 Tax=Musaceae TaxID=463... [more]
A0A7S1TP34_9STRA4.900e-3955.56Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A836CM24_9STRA5.540e-3956.30Rab6, rab family GTPase n=1 Tax=Tribonema minus Ta... [more]
A0A2P6NNP1_9EUKA8.890e-3956.30Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
T0QYI2_SAPDV9.660e-3955.56Ras-like protein Rab-6A n=4 Tax=Saprolegniaceae Ta... [more]
D7FMQ4_ECTSI1.050e-3854.81Rab6, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83643contigM-pyrifera_M_contig83643:181..585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.0
Seed ortholog evalue4.2e-31
Seed eggNOG ortholog159749.K0S5R4
Preferred nameRab6
KEGG koko:K07893,ko:K07976
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0005911,GO:0006810,GO:0006890,GO:0006891,GO:0008150,GO:0009506,GO:0012505,GO:0016020,GO:0016192,GO:0016197,GO:0016482,GO:0017076,GO:0019001,GO:0030054,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0042147,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055044,GO:0071944,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:1901265,GO:1901363
EggNOG free text desc.Rab subfamily of small GTPases
EggNOG OGs2XAUB@2836,KOG0094@1,KOG0094@2759
COG Functional cat.U
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04031,ko04131,ko04147
Exons1
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816744.4129183-CDS-M-pyrifera_M_contig83643:180..5851622816744.4129183-CDS-M-pyrifera_M_contig83643:180..585Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83643 181..585 +
1692278152.4874225-CDS-M-pyrifera_M_contig83643:180..5851692278152.4874225-CDS-M-pyrifera_M_contig83643:180..585Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83643 181..585 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83643.19538.1prot_M-pyrifera_M_contig83643.19538.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83643 181..585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83643.19538.1

>prot_M-pyrifera_M_contig83643.19538.1 ID=prot_M-pyrifera_M_contig83643.19538.1|Name=mRNA_M-pyrifera_M_contig83643.19538.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
VAPLAKFKLVFLGDQSVGKTSLIKSFMYGTFDARYQVSVVAWKLTREGGL
AFCCIASKLFPAPSPSTPLSAPSHLLQTTIGIDFMSKTIYLDDRTVRVQI
WDTAGQERFRSLIPSYIRDSSVAIVVYDITRKLSF
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mRNA from alignment at M-pyrifera_M_contig83643:181..585+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83643.19538.1 ID=mRNA_M-pyrifera_M_contig83643.19538.1|Name=mRNA_M-pyrifera_M_contig83643.19538.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=405bp|location=Sequence derived from alignment at M-pyrifera_M_contig83643:181..585+ (Macrocystis pyrifera P11B4 male)
GTAGCTCCGTTGGCAAAGTTTAAATTGGTGTTTTTAGGGGACCAGAGCGT
GGGAAAGACATCGTTGATCAAGAGTTTTATGTATGGTACATTTGATGCAC
GCTATCAGGTAAGTGTAGTTGCTTGGAAGTTGACGAGGGAGGGTGGTTTG
GCGTTCTGTTGCATTGCTTCCAAACTTTTTCCGGCACCATCACCATCCAC
ACCCCTCTCTGCCCCTTCCCACCTCTTGCAGACAACCATTGGAATTGACT
TTATGTCGAAAACTATTTATCTGGACGATCGTACGGTGCGAGTGCAGATT
TGGGACACGGCTGGACAAGAACGCTTCCGATCTCTCATTCCCTCCTACAT
CCGGGACTCCAGCGTTGCTATCGTTGTGTATGACATTACTCGTAAGTTGT
CTTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83643:181..585+

>mRNA_M-pyrifera_M_contig83643.19538.1 ID=mRNA_M-pyrifera_M_contig83643.19538.1|Name=mRNA_M-pyrifera_M_contig83643.19538.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig83643:181..585+ (Macrocystis pyrifera P11B4 male)
GTAGCTCCGTTGGCAAAGTTTAAATTGGTGTTTTTAGGGGACCAGAGCGT
GGGAAAGACATCGTTGATCAAGAGTTTTATGTATGGTACATTTGATGCAC
GCTATCAGGTAAGTGTAGTTGCTTGGAAGTTGACGAGGGAGGGTGGTTTG
GCGTTCTGTTGCATTGCTTCCAAACTTTTTCCGGCACCATCACCATCCAC
ACCCCTCTCTGCCCCTTCCCACCTCTTGCAGACAACCATTGGAATTGACT
TTATGTCGAAAACTATTTATCTGGACGATCGTACGGTGCGAGTGCAGATT
TGGGACACGGCTGGACAAGAACGCTTCCGATCTCTCATTCCCTCCTACAT
CCGGGACTCCAGCGTTGCTATCGTTGTGTATGACATTACTCGTAAGTTGT
CTTTCGTAGCTCCGTTGGCAAAGTTTAAATTGGTGTTTTTAGGGGACCAG
AGCGTGGGAAAGACATCGTTGATCAAGAGTTTTATGTATGGTACATTTGA
TGCACGCTATCAGGTAAGTGTAGTTGCTTGGAAGTTGACGAGGGAGGGTG
GTTTGGCGTTCTGTTGCATTGCTTCCAAACTTTTTCCGGCACCATCACCA
TCCACACCCCTCTCTGCCCCTTCCCACCTCTTGCAGACAACCATTGGAAT
TGACTTTATGTCGAAAACTATTTATCTGGACGATCGTACGGTGCGAGTGC
AGATTTGGGACACGGCTGGACAAGAACGCTTCCGATCTCTCATTCCCTCC
TACATCCGGGACTCCAGCGTTGCTATCGTTGTGTATGACATTACTCGTAA
GTTGTCTTTC
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