mRNA_M-pyrifera_M_contig8351.19509.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8351.19509.1
Unique NamemRNA_M-pyrifera_M_contig8351.19509.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8351.19509.1 vs. uniprot
Match: D8LH82_ECTSI (HAD-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH82_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.440e-22
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    1 ISAATRVAYRDMLFFDDDELNVKTVSEVGACCFRVSKDSGLTFVAVRSGFKKYREICLSRSSMRAWLQP 207
            I AAT V YRDMLFFDD++ N+KTV  +G  C +VSK+SGLTF AV +G K+YRE CLSRSS+R W  P
Sbjct:  190 IHAATGVEYRDMLFFDDEKHNIKTVRRLGVTCIKVSKESGLTFAAVNAGLKEYREACLSRSSLRGWFTP 258
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BLAST of mRNA_M-pyrifera_M_contig8351.19509.1 vs. uniprot
Match: A0A6H5KSC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSC5_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.990e-22
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    1 ISAATRVAYRDMLFFDDDELNVKTVSEVGACCFRVSKDSGLTFVAVRSGFKKYREICLSRSSMRAWLQP 207
            I AAT V YR+MLFFDD++ N+KTV  +G  C +VSK+SGLTF AV +G KKYRE CLSRSS+R W  P
Sbjct:  189 IHAATGVEYREMLFFDDEKHNIKTVRRLGVTCVKVSKESGLTFAAVNAGLKKYREACLSRSSLRGWFTP 257
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BLAST of mRNA_M-pyrifera_M_contig8351.19509.1 vs. uniprot
Match: A0A8J1URT8_OWEFU (Ofus.G181091 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1URT8_OWEFU)

HSP 1 Score: 48.9 bits (115), Expect = 3.610e-5
Identity = 21/58 (36.21%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:   19 VAYRDMLFFDDDELNVKTVSEVGACCFRVSKDSGLTFVAVRSGFKKYREICLSRSSMR 192
            +AYRDMLFFDD+  N+  +S++G  C  +  ++G++F  + +GFK++ +    +SS +
Sbjct:  139 IAYRDMLFFDDEYRNIADISKLGVTC--IYTENGMSFPELTNGFKQFNDNQTKQSSTK 194
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8351.19509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LH82_ECTSI1.440e-2263.77HAD-like protein n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5KSC5_9PHAE1.990e-2263.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J1URT8_OWEFU3.610e-536.21Ofus.G181091 protein n=1 Tax=Owenia fusiformis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8351contigM-pyrifera_M_contig8351:364..570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue4.6e-18
Seed eggNOG ortholog2880.D8LH82
Preferred nameMDP1
KEGG koko:K17619
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003993,GO:0004721,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006040,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0030389,GO:0030946,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0071704,GO:0140096,GO:1901135,GO:1901564
EggNOG free text desc.fructosamine metabolic process
EggNOG OGsKOG4549@1,KOG4549@2759
EC3.1.3.48
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816742.6263196-CDS-M-pyrifera_M_contig8351:363..5701622816742.6263196-CDS-M-pyrifera_M_contig8351:363..570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8351 364..570 +
1692278151.5364368-CDS-M-pyrifera_M_contig8351:363..5701692278151.5364368-CDS-M-pyrifera_M_contig8351:363..570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8351 364..570 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8351.19509.1prot_M-pyrifera_M_contig8351.19509.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8351 364..570 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8351.19509.1

>prot_M-pyrifera_M_contig8351.19509.1 ID=prot_M-pyrifera_M_contig8351.19509.1|Name=mRNA_M-pyrifera_M_contig8351.19509.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
ISAATRVAYRDMLFFDDDELNVKTVSEVGACCFRVSKDSGLTFVAVRSGF
KKYREICLSRSSMRAWLQP
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mRNA from alignment at M-pyrifera_M_contig8351:364..570+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8351.19509.1 ID=mRNA_M-pyrifera_M_contig8351.19509.1|Name=mRNA_M-pyrifera_M_contig8351.19509.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig8351:364..570+ (Macrocystis pyrifera P11B4 male)
ATCTCGGCTGCCACCAGAGTAGCATATCGAGACATGCTGTTCTTCGACGA
TGACGAGCTGAACGTGAAGACCGTGTCAGAGGTTGGCGCATGCTGCTTCA
GAGTCAGCAAGGACTCCGGTCTAACGTTCGTCGCGGTGCGGTCAGGTTTC
AAGAAGTATAGAGAAATTTGTTTGTCTAGATCAAGCATGAGGGCTTGGCT
GCAACCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8351:364..570+

>mRNA_M-pyrifera_M_contig8351.19509.1 ID=mRNA_M-pyrifera_M_contig8351.19509.1|Name=mRNA_M-pyrifera_M_contig8351.19509.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig8351:364..570+ (Macrocystis pyrifera P11B4 male)
ATCTCGGCTGCCACCAGAGTAGCATATCGAGACATGCTGTTCTTCGACGA
TGACGAGCTGAACGTGAAGACCGTGTCAGAGGTTGGCGCATGCTGCTTCA
GAGTCAGCAAGGACTCCGGTCTAACGTTCGTCGCGGTGCGGTCAGGTTTC
AAGAAGTATAGAGAAATTTGTTTGTCTAGATCAAGCATGAGGGCTTGGCT
GCAACCAATCTCGGCTGCCACCAGAGTAGCATATCGAGACATGCTGTTCT
TCGACGATGACGAGCTGAACGTGAAGACCGTGTCAGAGGTTGGCGCATGC
TGCTTCAGAGTCAGCAAGGACTCCGGTCTAACGTTCGTCGCGGTGCGGTC
AGGTTTCAAGAAGTATAGAGAAATTTGTTTGTCTAGATCAAGCATGAGGG
CTTGGCTGCAACCA
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