mRNA_M-pyrifera_M_contig83492.19501.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83492.19501.1
Unique NamemRNA_M-pyrifera_M_contig83492.19501.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig83492.19501.1 vs. uniprot
Match: A0A2D8CFE3_9BACT (Uncharacterized protein n=2 Tax=Balneola sp. TaxID=2024824 RepID=A0A2D8CFE3_9BACT)

HSP 1 Score: 288 bits (737), Expect = 1.650e-96
Identity = 147/166 (88.55%), Postives = 160/166 (96.39%), Query Frame = 1
Query:    1 SNERMRLQITFPELRLRDRESDIALSAFIHNSYDQSEGIRFYFGAIRAICSNGMVFGTVLSKYYSRHTKGFSFNDLAEKLAEARSFFPEIQERINRLEQLRVDEQLVEHVSTKISKRLAEQCIHEEEIGRITQWRLLNRLTNHISHEMEPHLQARYQENVSKVFAL 498
            SNERMRLQITFPEL+LRD+ES+IALSAFIHNSYDQSEGIRFYFGAIRAICSNGMVFGTVLSKYYSRHTKGFSF+DL+EKLAEARSFFPEIQERINRLE LRVDEQLVEHVS KISKRLA++ I +EEIGRI+QW LLNRLTN ISH+M+PH+QARYQ+NVSKVFAL
Sbjct:   90 SNERMRLQITFPELKLRDQESEIALSAFIHNSYDQSEGIRFYFGAIRAICSNGMVFGTVLSKYYSRHTKGFSFDDLSEKLAEARSFFPEIQERINRLEVLRVDEQLVEHVSEKISKRLAQEAIDQEEIGRISQWVLLNRLTNRISHDMDPHVQARYQDNVSKVFAL 255          
BLAST of mRNA_M-pyrifera_M_contig83492.19501.1 vs. uniprot
Match: A0A2D9FVE5_9BACT (Uncharacterized protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2D9FVE5_9BACT)

HSP 1 Score: 256 bits (655), Expect = 4.840e-84
Identity = 129/165 (78.18%), Postives = 145/165 (87.88%), Query Frame = 1
Query:    4 NERMRLQITFPELRLRDRESDIALSAFIHNSYDQSEGIRFYFGAIRAICSNGMVFGTVLSKYYSRHTKGFSFNDLAEKLAEARSFFPEIQERINRLEQLRVDEQLVEHVSTKISKRLAEQCIHEEEIGRITQWRLLNRLTNHISHEMEPHLQARYQENVSKVFAL 498
            N RMRL ITFPEL  RD ESDIALSAFIHNSYDQSEG+RFYFGAIR ICSNGMVFG +LSKYYS+HT GFSF DL EKLA+AR +FP IQERINRLE LRVDEQLVE+VS KISKRLAEQ I +EEIGRITQW +LNRLTN++SH+++   +ARYQ+N+SKVFAL
Sbjct:   91 NNRMRLMITFPELLFRDGESDIALSAFIHNSYDQSEGVRFYFGAIRKICSNGMVFGQILSKYYSKHTSGFSFEDLGEKLADARDYFPVIQERINRLETLRVDEQLVENVSNKISKRLAEQVIEQEEIGRITQWEMLNRLTNYVSHDLDQRHRARYQDNISKVFAL 255          
BLAST of mRNA_M-pyrifera_M_contig83492.19501.1 vs. uniprot
Match: A0A8J7RNH4_9BACT (DUF932 domain-containing protein n=1 Tax=Natronogracilivirgula saccharolytica TaxID=2812953 RepID=A0A8J7RNH4_9BACT)

HSP 1 Score: 212 bits (540), Expect = 1.390e-66
Identity = 110/165 (66.67%), Postives = 135/165 (81.82%), Query Frame = 1
Query:    4 NERMRLQITFPELRLRDRESDIALSAFIHNSYDQSEGIRFYFGAIRAICSNGMVFGTVLSKYYSRHTKGFSFNDLAEKLAEARSFFPEIQERINRLEQLRVDEQLVEHVSTKISKRLAEQCIHEEEIGRITQWRLLNRLTNHISHEMEPHLQARYQENVSKVFAL 498
            N RMRLQITFPEL++RDRESD+ALS FIHNSYD SE +RF+FGAIRAICSNGMVFG VL++Y SRHT GF+  DL ++L EA S    IQ+RI+ LE   V ++L+  VS  ISKRLAEQ I +EE+GR++Q+ LLNRLTNHISH++EP  +ARYQ++VSKVFAL
Sbjct:   91 NNRMRLQITFPELKMRDRESDLALSVFIHNSYDCSESVRFFFGAIRAICSNGMVFGEVLARYNSRHTSGFNLTDLGDRLHEAASQLDVIQQRIDHLEVQPVTDELMVSVSENISKRLAEQVISQEEMGRLSQYTLLNRLTNHISHKIEPRKRARYQQSVSKVFAL 255          
BLAST of mRNA_M-pyrifera_M_contig83492.19501.1 vs. uniprot
Match: A0A1M5HN18_9BACT (Uncharacterized protein n=1 Tax=Aliifodinibius roseus TaxID=1194090 RepID=A0A1M5HN18_9BACT)

HSP 1 Score: 201 bits (511), Expect = 3.430e-62
Identity = 99/163 (60.74%), Postives = 130/163 (79.75%), Query Frame = 1
Query:   10 RMRLQITFPELRLRDRESDIALSAFIHNSYDQSEGIRFYFGAIRAICSNGMVFGTVLSKYYSRHTKGFSFNDLAEKLAEARSFFPEIQERINRLEQLRVDEQLVEHVSTKISKRLAEQCIHEEEIGRITQWRLLNRLTNHISHEMEPHLQARYQENVSKVFAL 498
            RMRL +TFP L L+D ESDI LS F+HNSYD SEG+RFYFGAIRA+C+NGMVFG +L +YYS+HT GFS  D AEKL EA++ FP IQ RI+ LE +  + +LVE V+ KISKRLA+Q + E ++ RI+QW+LLNR+TN+ISHE++   +AR+Q +VS++F L
Sbjct:   93 RMRLMVTFPNLTLQDSESDINLSLFLHNSYDMSEGVRFYFGAIRAVCTNGMVFGDILGRYYSKHTSGFSLEDFAEKLDEAKAHFPAIQRRIDTLEHVPANGELVEGVADKISKRLADQILAEMDVNRISQWQLLNRVTNYISHEVDKPHRARHQRSVSQLFGL 255          
BLAST of mRNA_M-pyrifera_M_contig83492.19501.1 vs. uniprot
Match: A0A4Y8I7Z2_9BACT (DUF932 domain-containing protein n=1 Tax=Candidatus Marinimicrobia bacterium MT.SAG.3 TaxID=2552982 RepID=A0A4Y8I7Z2_9BACT)

HSP 1 Score: 157 bits (397), Expect = 7.320e-46
Identity = 83/165 (50.30%), Postives = 112/165 (67.88%), Query Frame = 1
Query:    4 NERMRLQITFPELRLRDRESDIALSAFIHNSYDQSEGIRFYFGAIRAICSNGMVFGTVLSKYYSRHTKGFSFNDLAEKLAEARSFFPEIQERINRLEQLRVDEQLVEHVSTKISKRLAEQCIHEEEIGRITQWRLLNRLTNHISHEMEPHLQARYQENVSKVFAL 498
            N+ MRLQ+TFPEL + D +S+IALS F+HNSYD SEG+R  +GAIR+IC+NGMVFG +LS+YY++HTKGF   +L   L E     P IQ+RI  LE   V  +L + + + + K+L++  + +      TQW L N LTN ISH +E   +ARYQ+ VSKVF L
Sbjct:   23 NKHMRLQVTFPELTMSDSDSEIALSLFLHNSYDMSEGVRMMWGAIRSICTNGMVFGKILSRYYAKHTKGFQIANLQTSLTETYDQIPVIQDRIKFLETAPVTTELRDRLESGVGKKLSKNVLEQ---NPATQWMLYNGLTNFISHVIEQRHRARYQQAVSKVFEL 184          
BLAST of mRNA_M-pyrifera_M_contig83492.19501.1 vs. uniprot
Match: A0A2E0ULK1_9GAMM (Uncharacterized protein n=1 Tax=Ectothiorhodospiraceae bacterium TaxID=2026737 RepID=A0A2E0ULK1_9GAMM)

HSP 1 Score: 142 bits (359), Expect = 2.470e-39
Identity = 81/167 (48.50%), Postives = 101/167 (60.48%), Query Frame = 1
Query:    4 NERMRLQITFPELRLRDRESDIALSAFIHNSYDQSEGIRFYFGAIRAICSNGMVFGTVLSKYYSRHTKGFSFNDLAEKLAEARSFFPEIQERINRLEQLRVDEQLVEHVSTKISKRLAEQCIHEEEIGRITQ--WRLLNRLTNHISHEMEPHLQARYQENVSKVFAL 498
            +E+MRLQ+TFPEL   D  SDIALS FIHNSYD SEGIR  FGAIR IC NGMVFG VLSK+Y +HT+GF   +L + L       P I+ RI  ++  R   +L   +  KI K+       +E   R  Q  W L N LT  ISH ++  ++A YQ  VSK+F L
Sbjct:   82 SEKMRLQVTFPELIFHDGRSDIALSLFIHNSYDSSEGIRMMFGAIRGICKNGMVFGEVLSKFYGKHTQGFDVRNLRQVLESTYDKIPVIKHRIEAMQNTRPSNELRADIQKKIGKKAMNYVEQQESESRKAQNEWILYNFLTYFISHIVQQRMRAHYQLQVSKLFKL 248          
BLAST of mRNA_M-pyrifera_M_contig83492.19501.1 vs. uniprot
Match: A0A849NPA2_9BACT (DUF932 domain-containing protein n=1 Tax=Ignavibacteriae bacterium TaxID=2026749 RepID=A0A849NPA2_9BACT)

HSP 1 Score: 138 bits (348), Expect = 1.430e-37
Identity = 78/163 (47.85%), Postives = 100/163 (61.35%), Query Frame = 1
Query:   10 RMRLQITFPELRLRDRESDIALSAFIHNSYDQSEGIRFYFGAIRAICSNGMVFGTVLSKYYSRHTKGFSFNDLAEKLAEARSFFPEIQERINRLEQLRVDEQLVEHVSTKISKRLAEQCIHEEEIGRITQWRLLNRLTNHISHEMEPHLQARYQENVSKVFAL 498
            RMRLQ+TFP+L L D ESDIALS FIHNSYD SEG+R Y+G IR ICSNG VFG VL+KYY++HT G    +L E++ +     P IQ RI  L  +       E +     K L      EE+    + W L N+LT +ISH ++  ++A YQ  VSK+F L
Sbjct:   98 RMRLQVTFPDLTLHDGESDIALSLFIHNSYDSSEGVRMYWGGIRGICSNGCVFGEVLAKYYAKHTSGIVVENLKEQIEDTYEQIPVIQNRIEILRNMESISNYEEKLPELFGKGLTNYV--EEQPKADSAWVLYNQLTYYISHYVQQRMRASYQMKVSKLFQL 258          
BLAST of mRNA_M-pyrifera_M_contig83492.19501.1 vs. uniprot
Match: A0A842RL18_9ARCH (DUF932 domain-containing protein n=1 Tax=Candidatus Lokiarchaeota archaeon TaxID=2053489 RepID=A0A842RL18_9ARCH)

HSP 1 Score: 133 bits (334), Expect = 2.230e-35
Identity = 84/172 (48.84%), Postives = 106/172 (61.63%), Query Frame = 1
Query:   10 RMRLQITFPELRLRDRESDIALSAFIHNSYDQSEGIRFYFGAIRAICSNGMVFGTVLSKYYSRHTKGFSFNDLAE--KLAEARSFFPEIQERINRL--EQLRVDEQLVEHVSTK-ISKRLAEQCIHEEEIGRITQ----WRLLNRLTNHISHEMEPHLQARYQENVSKVFAL 498
            RMRLQITFPEL +++  SDIA S F+HNSYD SEG+R   GAIR++C+NGMVFG VL K+Y RHT GFS  +L    KLA A    P  Q RI  L  E +RV++   E+V  K   KR  ++ + E +   + Q    W L N  T  ISH ++ HLQ  YQ+ VSK F L
Sbjct:   97 RMRLQITFPELIIKENGSDIAFSIFLHNSYDGSEGVRSIMGAIRSVCTNGMVFGDVLGKFYRRHTSGFSIGELENVVKLAIA-DVIPNAQRRIKALQSEAVRVNKAYKENVLEKNFGKRFTKKILEEGKAEGMKQTMSMWMLYNLATYVISHRIKKHLQFSYQQQVSKFFKL 267          
BLAST of mRNA_M-pyrifera_M_contig83492.19501.1 vs. uniprot
Match: A0A8J7UUR6_9BACT (DUF932 domain-containing protein n=1 Tax=Natronogracilivirgula saccharolytica TaxID=2812953 RepID=A0A8J7UUR6_9BACT)

HSP 1 Score: 131 bits (330), Expect = 5.250e-35
Identity = 68/163 (41.72%), Postives = 98/163 (60.12%), Query Frame = 1
Query:   10 RMRLQITFPELRLRDRESDIALSAFIHNSYDQSEGIRFYFGAIRAICSNGMVFGTVLSKYYSRHTKGFSFNDLAEKLAEARSFFPEIQERINRLEQLRVDEQLVEHVSTKISKRLAEQCIHEEEIGRITQWRLLNRLTNHISHEMEPHLQARYQENVSKVFAL 498
            RMRLQITFP+L + D ES I LS ++HNSYD SEG+R +FGAIR  CSNGMV G +L  +Y RHTKGF+F+ LA    +A      +Q  +  L++  +     + +   + K+   + +  ++    +QW   NRLT HISH+++   +A  Q  +S VF L
Sbjct:   84 RMRLQITFPDLAMHDGESLIPLSMYLHNSYDMSEGVRVFFGAIRLACSNGMVLGNILGSFYGRHTKGFAFDRLAVAFDDAAERIEAVQSHVRYLQESTLSRDRYQCLEHSLGKKRIAEVLDPQQSLAASQWEAYNRLTYHISHDVDKPRRAELQRKLSGVFEL 246          
BLAST of mRNA_M-pyrifera_M_contig83492.19501.1 vs. uniprot
Match: A0A1J4U705_9BACT (Uncharacterized protein n=1 Tax=Ignavibacteria bacterium CG1_02_37_35 TaxID=1805220 RepID=A0A1J4U705_9BACT)

HSP 1 Score: 114 bits (284), Expect = 2.040e-28
Identity = 55/100 (55.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:    1 SNERMRLQITFPELRLRDRESDIALSAFIHNSYDQSEGIRFYFGAIRAICSNGMVFGTVLSKYYSRHTKGFSFNDLAEKLAEARSFFPEIQERINRLEQL 300
            S+ RMRLQ+TFP+L   D +SDIALS F+HNS+D SEG+R ++GAIR ICSNGMVFG VL+K+Y+RHT G   ++L E++ +     P I+ERI  L+ +
Sbjct:   76 SDSRMRLQVTFPDLTFNDGKSDIALSLFLHNSFDGSEGVRLFWGAIRGICSNGMVFGKVLAKFYARHTSGIRLDNLKEQVEQTYEQIPVIKERIGILQNI 175          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83492.19501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A2D8CFE3_9BACT1.650e-9688.55Uncharacterized protein n=2 Tax=Balneola sp. TaxID... [more]
A0A2D9FVE5_9BACT4.840e-8478.18Uncharacterized protein n=1 Tax=Balneola sp. TaxID... [more]
A0A8J7RNH4_9BACT1.390e-6666.67DUF932 domain-containing protein n=1 Tax=Natronogr... [more]
A0A1M5HN18_9BACT3.430e-6260.74Uncharacterized protein n=1 Tax=Aliifodinibius ros... [more]
A0A4Y8I7Z2_9BACT7.320e-4650.30DUF932 domain-containing protein n=1 Tax=Candidatu... [more]
A0A2E0ULK1_9GAMM2.470e-3948.50Uncharacterized protein n=1 Tax=Ectothiorhodospira... [more]
A0A849NPA2_9BACT1.430e-3747.85DUF932 domain-containing protein n=1 Tax=Ignavibac... [more]
A0A842RL18_9ARCH2.230e-3548.84DUF932 domain-containing protein n=1 Tax=Candidatu... [more]
A0A8J7UUR6_9BACT5.250e-3541.72DUF932 domain-containing protein n=1 Tax=Natronogr... [more]
A0A1J4U705_9BACT2.040e-2855.00Uncharacterized protein n=1 Tax=Ignavibacteria bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83492contigM-pyrifera_M_contig83492:3..503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size501
Cds size489
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816742.2757623-UTR-M-pyrifera_M_contig83492:2..141622816742.2757623-UTR-M-pyrifera_M_contig83492:2..14Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83492 3..14 +
1692278151.3452332-UTR-M-pyrifera_M_contig83492:2..141692278151.3452332-UTR-M-pyrifera_M_contig83492:2..14Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83492 3..14 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816742.2909596-CDS-M-pyrifera_M_contig83492:14..5031622816742.2909596-CDS-M-pyrifera_M_contig83492:14..503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83492 15..503 +
1692278151.3560145-CDS-M-pyrifera_M_contig83492:14..5031692278151.3560145-CDS-M-pyrifera_M_contig83492:14..503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83492 15..503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83492.19501.1prot_M-pyrifera_M_contig83492.19501.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83492 15..503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83492.19501.1

>prot_M-pyrifera_M_contig83492.19501.1 ID=prot_M-pyrifera_M_contig83492.19501.1|Name=mRNA_M-pyrifera_M_contig83492.19501.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
MRLQITFPELRLRDRESDIALSAFIHNSYDQSEGIRFYFGAIRAICSNGM
VFGTVLSKYYSRHTKGFSFNDLAEKLAEARSFFPEIQERINRLEQLRVDE
QLVEHVSTKISKRLAEQCIHEEEIGRITQWRLLNRLTNHISHEMEPHLQA
RYQENVSKVFAL*
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mRNA from alignment at M-pyrifera_M_contig83492:3..503+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83492.19501.1 ID=mRNA_M-pyrifera_M_contig83492.19501.1|Name=mRNA_M-pyrifera_M_contig83492.19501.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig83492:3..503+ (Macrocystis pyrifera P11B4 male)
AGTAACGAAAGAATGCGATTACAGATTACTTTTCCTGAGCTTCGACTCCG TGATCGGGAATCTGACATTGCTTTGTCGGCATTCATTCATAATTCCTACG ATCAAAGCGAAGGTATCCGATTCTACTTCGGGGCTATCCGAGCGATCTGT TCCAACGGTATGGTGTTCGGAACCGTGCTATCCAAGTACTACTCCCGTCA TACCAAAGGATTCTCCTTTAATGACCTTGCCGAAAAGCTTGCCGAGGCCA GATCGTTCTTCCCTGAAATCCAGGAGCGGATCAACCGTCTGGAACAGCTT CGAGTAGACGAACAATTGGTAGAACACGTAAGCACTAAAATCTCCAAGCG ATTGGCAGAGCAGTGTATCCACGAAGAAGAAATTGGGCGTATCACCCAAT GGAGACTTCTTAACCGATTGACCAACCACATCAGCCACGAGATGGAGCCA CATCTTCAAGCTCGCTACCAAGAAAACGTAAGTAAGGTGTTTGCGCTATG A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83492:3..503+

>mRNA_M-pyrifera_M_contig83492.19501.1 ID=mRNA_M-pyrifera_M_contig83492.19501.1|Name=mRNA_M-pyrifera_M_contig83492.19501.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig83492:3..503+ (Macrocystis pyrifera P11B4 male)
ATGCGATTACAGATTACTTTTCCTGAGCTTCGACTCCGTGATCGGGAATC
TGACATTGCTTTGTCGGCATTCATTCATAATTCCTACGATCAAAGCGAAG
GTATCCGATTCTACTTCGGGGCTATCCGAGCGATCTGTTCCAACGGTATG
GTGTTCGGAACCGTGCTATCCAAGTACTACTCCCGTCATACCAAAGGATT
CTCCTTTAATGACCTTGCCGAAAAGCTTGCCGAGGCCAGATCGTTCTTCC
CTGAAATCCAGGAGCGGATCAACCGTCTGGAACAGCTTCGAGTAGACGAA
CAATTGGTAGAACACGTAAGCACTAAAATCTCCAAGCGATTGGCAGAGCA
GTGTATCCACGAAGAAGAAATTGGGCGTATCACCCAATGGAGACTTCTTA
ACCGATTGACCAACCACATCAGCCACGAGATGGAGCCACATCTTCAAGCT
CGCTACCAAGAAAACGTAAGTAAGGTGTTTGCGCTATGAATGCGATTACA
GATTACTTTTCCTGAGCTTCGACTCCGTGATCGGGAATCTGACATTGCTT
TGTCGGCATTCATTCATAATTCCTACGATCAAAGCGAAGGTATCCGATTC
TACTTCGGGGCTATCCGAGCGATCTGTTCCAACGGTATGGTGTTCGGAAC
CGTGCTATCCAAGTACTACTCCCGTCATACCAAAGGATTCTCCTTTAATG
ACCTTGCCGAAAAGCTTGCCGAGGCCAGATCGTTCTTCCCTGAAATCCAG
GAGCGGATCAACCGTCTGGAACAGCTTCGAGTAGACGAACAATTGGTAGA
ACACGTAAGCACTAAAATCTCCAAGCGATTGGCAGAGCAGTGTATCCACG
AAGAAGAAATTGGGCGTATCACCCAATGGAGACTTCTTAACCGATTGACC
AACCACATCAGCCACGAGATGGAGCCACATCTTCAAGCTCGCTACCAAGA
AAACGTAAGTAAGGTGTTTGCGCTATGA
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