mRNA_M-pyrifera_M_contig83490.19499.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83490.19499.1
Unique NamemRNA_M-pyrifera_M_contig83490.19499.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83490.19499.1 vs. uniprot
Match: A0A8F9W600_PRUPE (Cytochrome f n=1 Tax=Prunus persica TaxID=3760 RepID=A0A8F9W600_PRUPE)

HSP 1 Score: 101 bits (251), Expect = 3.390e-25
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:   25 MQTKNTFSWIKKEITRYISVSLMIYIITQAPLSNAYPIFAQQGYANPREA 174
            MQTKNTFSWIKKEITRYISVSLMIYIITQAPLSNAYPIFAQQGY NPREA
Sbjct:    1 MQTKNTFSWIKKEITRYISVSLMIYIITQAPLSNAYPIFAQQGYENPREA 50
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BLAST of mRNA_M-pyrifera_M_contig83490.19499.1 vs. uniprot
Match: A0A2U1N7L8_ARTAN (Cytochrome f n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1N7L8_ARTAN)

HSP 1 Score: 102 bits (255), Expect = 2.350e-24
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 IFGINDWTMQTKNTFSWIKKEITRYISVSLMIYIITQAPLSNAYPIFAQQGYANPREA 174
            IFGIN WTMQT+NTFSWIK++ITR IS+SLMIYIIT+  +SNAYPIFAQQGY NPREA
Sbjct:   86 IFGINGWTMQTRNTFSWIKEQITRSISISLMIYIITRTSISNAYPIFAQQGYENPREA 143
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BLAST of mRNA_M-pyrifera_M_contig83490.19499.1 vs. uniprot
Match: A0A2G3ANU4_CAPAN (Apocytochr_F_N domain-containing protein n=1 Tax=Capsicum annuum TaxID=4072 RepID=A0A2G3ANU4_CAPAN)

HSP 1 Score: 97.4 bits (241), Expect = 2.680e-22
Identity = 44/58 (75.86%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 IFGINDWTMQTKNTFSWIKKEITRYISVSLMIYIITQAPLSNAYPIFAQQGYANPREA 174
            IF INDWTMQT+N FSW+KK+ITR I VSLMIYI+T+  +S+AYPIFAQQGY NPREA
Sbjct:   66 IFAINDWTMQTRNVFSWLKKQITRSIFVSLMIYILTRTSISSAYPIFAQQGYENPREA 123
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BLAST of mRNA_M-pyrifera_M_contig83490.19499.1 vs. uniprot
Match: A0A650G8X8_9ROSA (Cytochrome f n=1 Tax=Hippophae tibetana TaxID=193519 RepID=A0A650G8X8_9ROSA)

HSP 1 Score: 92.0 bits (227), Expect = 4.490e-22
Identity = 43/50 (86.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:   25 MQTKNTFSWIKKEITRYISVSLMIYIITQAPLSNAYPIFAQQGYANPREA 174
            MQT+NTFSWIK+EITR IS+SLMIYIIT+AP+SNAYPIFAQQGY NPREA
Sbjct:    1 MQTQNTFSWIKEEITRSISISLMIYIITRAPISNAYPIFAQQGYENPREA 50
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BLAST of mRNA_M-pyrifera_M_contig83490.19499.1 vs. uniprot
Match: A0A8A3WIS5_9ROSI (Cytochrome f n=1 Tax=Coriaria nepalensis TaxID=79760 RepID=A0A8A3WIS5_9ROSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.680e-20
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:   25 MQTKNTFSWIKKEITRYISVSLMIYIITQAPLSNAYPIFAQQGYANPREA 174
            MQT+NTFSWIKKEITR ISVSLMIYIIT+A +SNAYPIFAQQGY NPREA
Sbjct:    1 MQTRNTFSWIKKEITRSISVSLMIYIITRASVSNAYPIFAQQGYENPREA 50
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BLAST of mRNA_M-pyrifera_M_contig83490.19499.1 vs. uniprot
Match: H6WAK3_9ROSA (Cytochrome f n=25 Tax=Pentapetalae TaxID=1437201 RepID=H6WAK3_9ROSA)

HSP 1 Score: 90.9 bits (224), Expect = 1.730e-20
Identity = 47/52 (90.38%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:   25 MQTKNTFSW--IKKEITRYISVSLMIYIITQAPLSNAYPIFAQQGYANPREA 174
            MQTKNTFSW  IK EITR ISVSLMIYIITQAPLSNAYPIFAQQGY NPREA
Sbjct:    1 MQTKNTFSWTWIKNEITRSISVSLMIYIITQAPLSNAYPIFAQQGYENPREA 52
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BLAST of mRNA_M-pyrifera_M_contig83490.19499.1 vs. uniprot
Match: UPI001E44D56A (hypothetical protein n=1 Tax=Actinoplanes ianthinogenes TaxID=122358 RepID=UPI001E44D56A)

HSP 1 Score: 85.1 bits (209), Expect = 2.300e-20
Identity = 40/50 (80.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:   25 MQTKNTFSWIKKEITRYISVSLMIYIITQAPLSNAYPIFAQQGYANPREA 174
            MQT+NTFSWIK++ITR ISVSLMIYIIT+  +S+AYPIFAQQGY NPREA
Sbjct:    1 MQTRNTFSWIKEQITRSISVSLMIYIITRTSISSAYPIFAQQGYENPREA 50
[Close]
BLAST of mRNA_M-pyrifera_M_contig83490.19499.1 vs. uniprot
Match: A0A1L1WQM5_9ROSI (Cytochrome f n=54 Tax=cellular organisms TaxID=131567 RepID=A0A1L1WQM5_9ROSI)

HSP 1 Score: 90.1 bits (222), Expect = 3.280e-20
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:   25 MQTKNTFSWIKKEITRYISVSLMIYIITQAPLSNAYPIFAQQGYANPREA 174
            MQT+NTFSWIKKEITR ISVSLMIYIIT A +SNAYPIFAQQGY NPREA
Sbjct:    1 MQTRNTFSWIKKEITRSISVSLMIYIITGASISNAYPIFAQQGYENPREA 50
[Close]
BLAST of mRNA_M-pyrifera_M_contig83490.19499.1 vs. uniprot
Match: CYF_PEA (Cytochrome f n=190 Tax=Gunneridae TaxID=91827 RepID=CYF_PEA)

HSP 1 Score: 90.1 bits (222), Expect = 3.280e-20
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:   25 MQTKNTFSWIKKEITRYISVSLMIYIITQAPLSNAYPIFAQQGYANPREA 174
            MQT+N FSWIKKEITR ISV LMIYIIT+AP+SNAYPIFAQQGY NPREA
Sbjct:    1 MQTRNAFSWIKKEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREA 50
[Close]
BLAST of mRNA_M-pyrifera_M_contig83490.19499.1 vs. uniprot
Match: A0A5B8GX15_9ROSA (Cytochrome f n=1 Tax=Hippophae rhamnoides subsp. yunnanensis TaxID=193518 RepID=A0A5B8GX15_9ROSA)

HSP 1 Score: 89.7 bits (221), Expect = 4.580e-20
Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:   25 MQTKNTFSWIKKEITRYISVSLMIYIITQAPLSNAYPIFAQQGYANPREA 174
            MQ +NTFSWIK+EITR IS+SLMIYIIT+AP+SNAYPIFAQQGY NPREA
Sbjct:    1 MQIQNTFSWIKEEITRSISISLMIYIITRAPISNAYPIFAQQGYENPREA 50
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83490.19499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F9W600_PRUPE3.390e-2598.00Cytochrome f n=1 Tax=Prunus persica TaxID=3760 Rep... [more]
A0A2U1N7L8_ARTAN2.350e-2481.03Cytochrome f n=1 Tax=Artemisia annua TaxID=35608 R... [more]
A0A2G3ANU4_CAPAN2.680e-2275.86Apocytochr_F_N domain-containing protein n=1 Tax=C... [more]
A0A650G8X8_9ROSA4.490e-2286.00Cytochrome f n=1 Tax=Hippophae tibetana TaxID=1935... [more]
A0A8A3WIS5_9ROSI1.680e-2088.00Cytochrome f n=1 Tax=Coriaria nepalensis TaxID=797... [more]
H6WAK3_9ROSA1.730e-2090.38Cytochrome f n=25 Tax=Pentapetalae TaxID=1437201 R... [more]
UPI001E44D56A2.300e-2080.00hypothetical protein n=1 Tax=Actinoplanes ianthino... [more]
A0A1L1WQM5_9ROSI3.280e-2088.00Cytochrome f n=54 Tax=cellular organisms TaxID=131... [more]
CYF_PEA3.280e-2086.00Cytochrome f n=190 Tax=Gunneridae TaxID=91827 RepI... [more]
A0A5B8GX15_9ROSA4.580e-2084.00Cytochrome f n=1 Tax=Hippophae rhamnoides subsp. y... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83490contigM-pyrifera_M_contig83490:719..892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score90.1
Seed ortholog evalue3.1e-16
Seed eggNOG ortholog13333.ERN02870
Preferred namepetA
KEGG koko:K02634
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00162
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009507,GO:0009512,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009767,GO:0009987,GO:0015979,GO:0016020,GO:0019684,GO:0022900,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0055114,GO:0070069
EggNOG free text desc.Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions
EggNOG OGs2CMAK@1,2QPT8@2759,37MKA@33090,3GD5I@35493
COG Functional cat.C
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Exons1
Model size174
Cds size150
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816742.1818478-UTR-M-pyrifera_M_contig83490:718..7421622816742.1818478-UTR-M-pyrifera_M_contig83490:718..742Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83490 719..742 +
1692278151.3069925-UTR-M-pyrifera_M_contig83490:718..7421692278151.3069925-UTR-M-pyrifera_M_contig83490:718..742Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83490 719..742 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816742.1950655-CDS-M-pyrifera_M_contig83490:742..8921622816742.1950655-CDS-M-pyrifera_M_contig83490:742..892Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83490 743..892 +
1692278151.3210206-CDS-M-pyrifera_M_contig83490:742..8921692278151.3210206-CDS-M-pyrifera_M_contig83490:742..892Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83490 743..892 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83490.19499.1prot_M-pyrifera_M_contig83490.19499.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83490 743..892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83490.19499.1

>prot_M-pyrifera_M_contig83490.19499.1 ID=prot_M-pyrifera_M_contig83490.19499.1|Name=mRNA_M-pyrifera_M_contig83490.19499.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=50bp
MQTKNTFSWIKKEITRYISVSLMIYIITQAPLSNAYPIFAQQGYANPREA
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mRNA from alignment at M-pyrifera_M_contig83490:719..892+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83490.19499.1 ID=mRNA_M-pyrifera_M_contig83490.19499.1|Name=mRNA_M-pyrifera_M_contig83490.19499.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=174bp|location=Sequence derived from alignment at M-pyrifera_M_contig83490:719..892+ (Macrocystis pyrifera P11B4 male)
ATTTTCGGGATCAATGATTGGACCATGCAAACTAAAAATACCTTTTCTTG
GATAAAGAAAGAGATTACTCGATACATTTCCGTATCGCTCATGATATATA
TAATAACCCAGGCACCCCTTTCAAATGCATATCCCATTTTTGCACAGCAG
GGTTATGCAAATCCACGAGAAGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83490:719..892+

>mRNA_M-pyrifera_M_contig83490.19499.1 ID=mRNA_M-pyrifera_M_contig83490.19499.1|Name=mRNA_M-pyrifera_M_contig83490.19499.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig83490:719..892+ (Macrocystis pyrifera P11B4 male)
ATGCAAACTAAAAATACCTTTTCTTGGATAAAGAAAGAGATTACTCGATA
CATTTCCGTATCGCTCATGATATATATAATAACCCAGGCACCCCTTTCAA
ATGCATATCCCATTTTTGCACAGCAGGGTTATGCAAATCCACGAGAAGCG
ATGCAAACTAAAAATACCTTTTCTTGGATAAAGAAAGAGATTACTCGATA
CATTTCCGTATCGCTCATGATATATATAATAACCCAGGCACCCCTTTCAA
ATGCATATCCCATTTTTGCACAGCAGGGTTATGCAAATCCACGAGAAGCG
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