prot_M-pyrifera_M_contig83486.19494.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig83486.19494.1
Unique Nameprot_M-pyrifera_M_contig83486.19494.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length92
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig83486.19494.1 vs. uniprot
Match: A0A6H5KJH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH4_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 9.440e-31
Identity = 67/93 (72.04%), Postives = 77/93 (82.80%), Query Frame = 0 
Query:    1 LPVEISGCKNLTIVEADNNDLSSLPPALAHMALQRLSLRRNSLSSAAKIGAFLTPP-VAPAGSLPLARSIRELDLSSNGLEEMPPSIFACRGL 92
            LP EIS  +NLT +EADNN LS+LP ALA MA+ RLSLRRNSLSS+A + AFL PP +AP GSLPL+ SIRELDLSSN L E+PP+IFACRGL
Sbjct:  349 LPGEISRFENLTTIEADNNGLSALPDALARMAIYRLSLRRNSLSSSAAVEAFLAPPAIAPPGSLPLSISIRELDLSSNDLGEVPPAIFACRGL 441
[Close]
BLAST of mRNA_M-pyrifera_M_contig83486.19494.1 vs. uniprot
Match: D8LFI7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI7_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.050e-12
Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 0 
Query:   14 VEADNNDLSSLPPALAHMALQRLSLRRNSLSSAAKIGAFLTPP-VAPAGSLPLARSIRELDLSSNGLEEMPPSIFACRGL 92
            ++ +   ++SLPP L        ++ R  LS   K+ AFL PP +AP GSLPL+ SIRELDLSSN L E+PP+IFACRGL
Sbjct:  449 LDVEGRGMTSLPPGLFQDDRTLSAVTRAKLSGN-KLQAFLAPPAIAPPGSLPLSISIRELDLSSNDLGEVPPAIFACRGL 527
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83486.19494.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJH4_9PHAE9.440e-3172.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFI7_ECTSI1.050e-1252.50Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..92
e-value: 6.7E-13
score: 49.8
IPR001611Leucine-rich repeatPFAMPF00560LRR_1coord: 69..87
e-value: 1.8
score: 9.4
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 1..91
NoneNo IPR availablePANTHERPTHR16083:SF23FI16115P1coord: 1..91
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 1..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83486contigM-pyrifera_M_contig83486:149..424 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83486.19494.1mRNA_M-pyrifera_M_contig83486.19494.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig83486 149..424 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig83486.19494.1 ID=prot_M-pyrifera_M_contig83486.19494.1|Name=mRNA_M-pyrifera_M_contig83486.19494.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
LPVEISGCKNLTIVEADNNDLSSLPPALAHMALQRLSLRRNSLSSAAKIG
AFLTPPVAPAGSLPLARSIRELDLSSNGLEEMPPSIFACRGL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt