mRNA_M-pyrifera_M_contig83486.19494.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83486.19494.1
Unique NamemRNA_M-pyrifera_M_contig83486.19494.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83486.19494.1 vs. uniprot
Match: A0A6H5KJH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH4_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 9.440e-31
Identity = 67/93 (72.04%), Postives = 77/93 (82.80%), Query Frame = 1 
Query:    1 LPVEISGCKNLTIVEADNNDLSSLPPALAHMALQRLSLRRNSLSSAAKIGAFLTPP-VAPAGSLPLARSIRELDLSSNGLEEMPPSIFACRGL 276
            LP EIS  +NLT +EADNN LS+LP ALA MA+ RLSLRRNSLSS+A + AFL PP +AP GSLPL+ SIRELDLSSN L E+PP+IFACRGL
Sbjct:  349 LPGEISRFENLTTIEADNNGLSALPDALARMAIYRLSLRRNSLSSSAAVEAFLAPPAIAPPGSLPLSISIRELDLSSNDLGEVPPAIFACRGL 441
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BLAST of mRNA_M-pyrifera_M_contig83486.19494.1 vs. uniprot
Match: D8LFI7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI7_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.050e-12
Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 1 
Query:   40 VEADNNDLSSLPPALAHMALQRLSLRRNSLSSAAKIGAFLTPP-VAPAGSLPLARSIRELDLSSNGLEEMPPSIFACRGL 276
            ++ +   ++SLPP L        ++ R  LS   K+ AFL PP +AP GSLPL+ SIRELDLSSN L E+PP+IFACRGL
Sbjct:  449 LDVEGRGMTSLPPGLFQDDRTLSAVTRAKLSGN-KLQAFLAPPAIAPPGSLPLSISIRELDLSSNDLGEVPPAIFACRGL 527
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83486.19494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJH4_9PHAE9.440e-3172.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFI7_ECTSI1.050e-1252.50Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83486contigM-pyrifera_M_contig83486:149..424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue7.3e-11
Seed eggNOG ortholog2880.D8LFI7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Leucine-rich repeats, outliers
EggNOG OGsCOG4886@1,KOG0472@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816741.894681-CDS-M-pyrifera_M_contig83486:148..4241622816741.894681-CDS-M-pyrifera_M_contig83486:148..424Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83486 149..424 -
1692278151.1486647-CDS-M-pyrifera_M_contig83486:148..4241692278151.1486647-CDS-M-pyrifera_M_contig83486:148..424Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83486 149..424 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83486.19494.1prot_M-pyrifera_M_contig83486.19494.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83486 149..424 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83486.19494.1

>prot_M-pyrifera_M_contig83486.19494.1 ID=prot_M-pyrifera_M_contig83486.19494.1|Name=mRNA_M-pyrifera_M_contig83486.19494.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
LPVEISGCKNLTIVEADNNDLSSLPPALAHMALQRLSLRRNSLSSAAKIG
AFLTPPVAPAGSLPLARSIRELDLSSNGLEEMPPSIFACRGL
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mRNA from alignment at M-pyrifera_M_contig83486:149..424-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83486.19494.1 ID=mRNA_M-pyrifera_M_contig83486.19494.1|Name=mRNA_M-pyrifera_M_contig83486.19494.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig83486:149..424- (Macrocystis pyrifera P11B4 male)
CTCCCCGTCGAGATTTCCGGGTGCAAGAACCTGACGATCGTCGAGGCGGA
CAACAACGACCTGTCCTCGCTGCCGCCGGCATTGGCCCACATGGCCCTCC
AACGCCTTTCCCTCAGGCGGAACTCCCTGTCGTCGGCTGCCAAGATTGGG
GCGTTTTTGACCCCCCCTGTAGCACCCGCTGGCAGCCTGCCGCTTGCTCG
ATCCATCCGCGAGCTGGACCTGTCGTCAAACGGGTTGGAGGAGATGCCCC
CGTCGATTTTCGCTTGTCGTGGCCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83486:149..424-

>mRNA_M-pyrifera_M_contig83486.19494.1 ID=mRNA_M-pyrifera_M_contig83486.19494.1|Name=mRNA_M-pyrifera_M_contig83486.19494.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig83486:149..424- (Macrocystis pyrifera P11B4 male)
CTCCCCGTCGAGATTTCCGGGTGCAAGAACCTGACGATCGTCGAGGCGGA
CAACAACGACCTGTCCTCGCTGCCGCCGGCATTGGCCCACATGGCCCTCC
AACGCCTTTCCCTCAGGCGGAACTCCCTGTCGTCGGCTGCCAAGATTGGG
GCGTTTTTGACCCCCCCTGTAGCACCCGCTGGCAGCCTGCCGCTTGCTCG
ATCCATCCGCGAGCTGGACCTGTCGTCAAACGGGTTGGAGGAGATGCCCC
CGTCGATTTTCGCTTGTCGTGGCCTTCTCCCCGTCGAGATTTCCGGGTGC
AAGAACCTGACGATCGTCGAGGCGGACAACAACGACCTGTCCTCGCTGCC
GCCGGCATTGGCCCACATGGCCCTCCAACGCCTTTCCCTCAGGCGGAACT
CCCTGTCGTCGGCTGCCAAGATTGGGGCGTTTTTGACCCCCCCTGTAGCA
CCCGCTGGCAGCCTGCCGCTTGCTCGATCCATCCGCGAGCTGGACCTGTC
GTCAAACGGGTTGGAGGAGATGCCCCCGTCGATTTTCGCTTGTCGTGGCC
TT
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