mRNA_M-pyrifera_M_contig83427.19479.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83427.19479.1
Unique NamemRNA_M-pyrifera_M_contig83427.19479.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig83427.19479.1 vs. uniprot
Match: A0A5Q2RKU6_9ACTN (Pyridoxal phosphate homeostasis protein n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RKU6_9ACTN)

HSP 1 Score: 147 bits (371), Expect = 4.070e-42
Identity = 80/122 (65.57%), Postives = 92/122 (75.41%), Query Frame = 1
Query:    1 VSLWQTVDRLDLATEIAKRSPGARILVQVNTTGEPQKSGCEPIDVDQLVDDSRALGLDVAGLMTVGPT-AATDPRPAFALLRAKLDQLGLSVCSMGMSGDLEAAVAEGTTMVRVGSALFGPR 363
            V LWQ+VDRL L  EIA+R+PGAR+LVQV+ T EP K GC   ++D+LV     LGLDV GLMTVGPT    DPRPAF  +RA  D+LGL   SMGMS DLEAAVA GTTMVR+G+ALFGPR
Sbjct:   93 VHLWQSVDRLPLGEEIARRAPGARVLVQVDATDEPGKGGCPLAELDRLVGSLIDLGLDVDGLMTVGPTDPEVDPRPAFDRVRAARDRLGLRTLSMGMSRDLEAAVACGTTMVRLGTALFGPR 214          
BLAST of mRNA_M-pyrifera_M_contig83427.19479.1 vs. uniprot
Match: A0A8F4J670_9ACTN (YggS family pyridoxal phosphate-dependent enzyme n=1 Tax=Aquihabitans sp. G128 TaxID=2849779 RepID=A0A8F4J670_9ACTN)

HSP 1 Score: 147 bits (370), Expect = 6.820e-42
Identity = 80/122 (65.57%), Postives = 91/122 (74.59%), Query Frame = 1
Query:    1 VSLWQTVDRLDLATEIAKRSPGARILVQVNTTGEPQKSGCEPIDVDQLVDDSRALGLDVAGLMTVGPTAATDP-RPAFALLRAKLDQLGLSVCSMGMSGDLEAAVAEGTTMVRVGSALFGPR 363
            V+LWQ+VDRLDL  EIAKR+PGA +LVQVN + EPQK GC P +  +LV     LGLDV GLMTVG T   +  R  FA LR+  D+L L V SMGMSGDLEAAVAEG TM+RVGSALFGPR
Sbjct:  101 VALWQSVDRLDLGAEIAKRAPGAAVLVQVNVSDEPQKGGCAPGEAPELVARLGDLGLDVQGLMTVGRTGPAEAARAGFAELRSLADRLDLPVRSMGMSGDLEAAVAEGATMIRVGSALFGPR 222          
BLAST of mRNA_M-pyrifera_M_contig83427.19479.1 vs. uniprot
Match: A0A7Y1ZUV4_9ACTN (YggS family pyridoxal phosphate-dependent enzyme n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y1ZUV4_9ACTN)

HSP 1 Score: 146 bits (369), Expect = 7.290e-42
Identity = 74/125 (59.20%), Postives = 93/125 (74.40%), Query Frame = 1
Query:    1 VSLWQTVDRLDLATEIAKRSPGARILVQVNTTGEPQKSGCEPIDVDQLVDDSRALGLDVAGLMTVGPTAAT--DPRPAFALLRAKLDQLGLSVCSMGMSGDLEAAVAEGTTMVRVGSALFGPRSA 369
            VSLW+T+DR  +  E+AKR+PGAR+L+QVN TGE  K GC+P +  +LV  +RA GL V GLMTVGPT  T  D  P F ++RA +D+LGL+ CSMGM+ DL+ AVA G T VRVG+ALFGPR A
Sbjct:   93 VSLWETLDRPSVIKEVAKRAPGARVLIQVNATGEAGKGGCDPAEAGELVTLARAEGLVVEGLMTVGPTDGTPADAEPGFRVVRALVDELGLATCSMGMTADLDVAVAAGATQVRVGTALFGPRPA 217          
BLAST of mRNA_M-pyrifera_M_contig83427.19479.1 vs. uniprot
Match: A0A6N7FP14_9ACTN (Pyridoxal phosphate homeostasis protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FP14_9ACTN)

HSP 1 Score: 144 bits (364), Expect = 5.800e-41
Identity = 75/122 (61.48%), Postives = 93/122 (76.23%), Query Frame = 1
Query:    1 VSLWQTVDRLDLATEIAKRSPGARILVQVNTTGEPQKSGCEPIDVDQLVDDSRALGLDVAGLMTVGPTAATDP-RPAFALLRAKLDQLGLSVCSMGMSGDLEAAVAEGTTMVRVGSALFGPR 363
            V  +Q+VDR +L  E+ +R+PGAR+L+QVNTTGE QK+GC P  V  L++ +RA GL V GLMTVGPT A  P RPAFA LR  +D+ GL VCSMGM+ DL+ AV EG+TM+RVG ALFGPR
Sbjct:  101 VHRFQSVDRPELVDELVRRAPGARVLLQVNTTGEAQKAGCSPEAVGPLLEGARAGGLVVEGLMTVGPTQAGAPARPAFAALRGLVDRFGLEVCSMGMTDDLDVAVGEGSTMIRVGRALFGPR 222          
BLAST of mRNA_M-pyrifera_M_contig83427.19479.1 vs. uniprot
Match: A0A7Y1X6Z7_9ACTN (YggS family pyridoxal phosphate-dependent enzyme n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y1X6Z7_9ACTN)

HSP 1 Score: 143 bits (361), Expect = 8.170e-41
Identity = 74/122 (60.66%), Postives = 88/122 (72.13%), Query Frame = 1
Query:    1 VSLWQTVDRLDLATEIAKRSPGARILVQVNTTGEPQKSGCEPIDVDQLVDDSRALGLDVAGLMTVGPT-AATDPRPAFALLRAKLDQLGLSVCSMGMSGDLEAAVAEGTTMVRVGSALFGPR 363
            V LW ++DR+ L  +IA R PGA +L+QVN TGE  KSG  P +V  LVD    LGLDV GLMT+G T  + DPRP FA  RA +D  GL +CSMGMSGD E A+AEG+TMVRVGSA+FGPR
Sbjct:   83 VHLWHSIDRVALLEQIASRQPGAAVLIQVNFTGEDTKSGAAPDEVAALVDAGLGLGLDVGGLMTMGFTDTSLDPRPVFARCRAAVDAHGLEICSMGMSGDFELAIAEGSTMVRVGSAIFGPR 204          
BLAST of mRNA_M-pyrifera_M_contig83427.19479.1 vs. uniprot
Match: A0A4P5QXT3_9ACTN (YggS family pyridoxal phosphate enzyme n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A4P5QXT3_9ACTN)

HSP 1 Score: 143 bits (360), Expect = 1.920e-40
Identity = 83/129 (64.34%), Postives = 96/129 (74.42%), Query Frame = 1
Query:    1 VSLWQTVDRLDLATEIAKRSPGARILVQVNTTGEPQKSGCEPIDVDQLVDDSRALGLDVAGLMTVGPTAATDP---RPAFALLRAKLDQLGLSVCSMGMSGDLEAAVAEGTTMVRVGSALFGPR-SAAR 375
            VS+WQ+VDR  L  EIAKRS GA I VQVN T EP K GC P +  +LV+ ++  GL V GLMTVGPT   DP   R AFAL+RA  DQLGL+ CSMGMSGDLE A+AEG+TM+RVG+ALFG R SAAR
Sbjct:   91 VSVWQSVDRASLIDEIAKRSAGAHIYVQVNATQEPDKGGCSPQEAPRLVERAQRAGLVVDGLMTVGPTDE-DPQGTRRAFALVRALADQLGLAGCSMGMSGDLEIALAEGSTMLRVGTALFGERPSAAR 218          
BLAST of mRNA_M-pyrifera_M_contig83427.19479.1 vs. uniprot
Match: A0A4R7HYN3_9ACTN (Pyridoxal phosphate homeostasis protein n=1 Tax=Ilumatobacter fluminis TaxID=467091 RepID=A0A4R7HYN3_9ACTN)

HSP 1 Score: 142 bits (359), Expect = 2.640e-40
Identity = 77/123 (62.60%), Postives = 91/123 (73.98%), Query Frame = 1
Query:    1 VSLWQTVDRLDLATEIAKRSPGARILVQVNTTGEPQKSGCEPIDVDQLVDDSRALGLDVAGLMTVGPTAA--TDPRPAFALLRAKLDQLGLSVCSMGMSGDLEAAVAEGTTMVRVGSALFGPR 363
            V +++TVDR  LA EIAKR+PGARIL+QV+TTGEP K G    D+D LVD  R L LD+ GLMTVGPT        P F  +RA +D+LGLSVCSMGM+ DLE AVAEG+T VRVG+ALFG R
Sbjct:   91 VDVYETVDRAKLAREIAKRAPGARILIQVDTTGEPGKGGVPLADLDPLVDHVRDLDLDLIGLMTVGPTEGGPAAAAPGFRQVRAAVDRLGLSVCSMGMTADLEVAVAEGSTQVRVGTALFGQR 213          
BLAST of mRNA_M-pyrifera_M_contig83427.19479.1 vs. uniprot
Match: A0A6C7EE71_ILUCY (Ala_racemase_N domain-containing protein n=2 Tax=Ilumatobacter coccineus TaxID=467094 RepID=A0A6C7EE71_ILUCY)

HSP 1 Score: 142 bits (359), Expect = 3.120e-40
Identity = 77/124 (62.10%), Postives = 89/124 (71.77%), Query Frame = 1
Query:    1 VSLWQTVDRLDLATEIAKRSPGARILVQVNTTGEPQKSGCEPIDVDQLVDDSRALGLDVAGLMTVGPTAATDP--RPAFALLRAKLDQLGLSVCSMGMSGDLEAAVAEGTTMVRVGSALFGPRS 366
            V LW +VDR  L  EIAKR+PGARILVQVN+TGE  K GC   D   LV+ +R  GLDVAGLMTVGPT       RP F  +R  +D+LGL VCSMGMSGD+E AVA G+T VRVG+ALFG R+
Sbjct:  105 VDLWASVDRPSLVAEIAKRAPGARILVQVNSTGEDGKGGCALGDTAALVERAREAGLDVAGLMTVGPTGEPPEAARPGFEAVRRLVDELGLEVCSMGMSGDIEVAVAAGSTNVRVGTALFGSRA 228          
BLAST of mRNA_M-pyrifera_M_contig83427.19479.1 vs. uniprot
Match: A0A7Y2II85_9ACTN (Pyridoxal phosphate homeostasis protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2II85_9ACTN)

HSP 1 Score: 140 bits (353), Expect = 2.440e-39
Identity = 71/122 (58.20%), Postives = 86/122 (70.49%), Query Frame = 1
Query:    1 VSLWQTVDRLDLATEIAKRSPGARILVQVNTTGEPQKSGCEPIDVDQLVDDSRALGLDVAGLMTVGPT-AATDPRPAFALLRAKLDQLGLSVCSMGMSGDLEAAVAEGTTMVRVGSALFGPR 363
            V+LW T+DR  L  E+AKRSPGA +L+QVN TGE  KSGC+  D+  LV+ +   GL V GLMT+GPT  A DP P FA  R   D  GL  CSMGMSGD E A+ +G+TMVRVG+A+FGPR
Sbjct:  105 VTLWHTIDREPLIEELAKRSPGAELLLQVNLTGEASKSGCDAADLGMLVEHAHRNGLGVRGLMTMGPTDTAIDPAPVFARCRELADHHGLEHCSMGMSGDFETAIVQGSTMVRVGTAIFGPR 226          
BLAST of mRNA_M-pyrifera_M_contig83427.19479.1 vs. uniprot
Match: A0A4P5R7F0_9ACTN (Pyridoxal phosphate homeostasis protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A4P5R7F0_9ACTN)

HSP 1 Score: 139 bits (349), Expect = 1.030e-38
Identity = 74/129 (57.36%), Postives = 95/129 (73.64%), Query Frame = 1
Query:    1 VSLWQTVDRLDLATEIAKR--SPGA----RILVQVNTTGEPQKSGCEPIDVDQLVDDSRALGLDVAGLMTVGPTA--ATDPRPAFALLRAKLDQLGLSVCSMGMSGDLEAAVAEGTTMVRVGSALFGPR 363
            V +WQ+VDR++L  EIAKR   PGA    +I++QVN T EP K GC+P +V  LV+ + A GL+V GLMTVGPT+  A   + +F L+R  +D LGL  CSMGM+GDLE A+AEG+TM+RVGSALFGPR
Sbjct:  100 VDVWQSVDRVELINEIAKRCVKPGAGDRPQIMLQVNATDEPDKGGCKPHEVSDLVETANAKGLEVLGLMTVGPTSNEAQSTQRSFRLVRKLVDDLGLKQCSMGMTGDLEIAIAEGSTMIRVGSALFGPR 228          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83427.19479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5Q2RKU6_9ACTN4.070e-4265.57Pyridoxal phosphate homeostasis protein n=1 Tax=Ac... [more]
A0A8F4J670_9ACTN6.820e-4265.57YggS family pyridoxal phosphate-dependent enzyme n... [more]
A0A7Y1ZUV4_9ACTN7.290e-4259.20YggS family pyridoxal phosphate-dependent enzyme n... [more]
A0A6N7FP14_9ACTN5.800e-4161.48Pyridoxal phosphate homeostasis protein n=1 Tax=Ac... [more]
A0A7Y1X6Z7_9ACTN8.170e-4160.66YggS family pyridoxal phosphate-dependent enzyme n... [more]
A0A4P5QXT3_9ACTN1.920e-4064.34YggS family pyridoxal phosphate enzyme n=1 Tax=Act... [more]
A0A4R7HYN3_9ACTN2.640e-4062.60Pyridoxal phosphate homeostasis protein n=1 Tax=Il... [more]
A0A6C7EE71_ILUCY3.120e-4062.10Ala_racemase_N domain-containing protein n=2 Tax=I... [more]
A0A7Y2II85_9ACTN2.440e-3958.20Pyridoxal phosphate homeostasis protein n=1 Tax=Ac... [more]
A0A4P5R7F0_9ACTN1.030e-3857.36Pyridoxal phosphate homeostasis protein n=2 Tax=Ac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83427contigM-pyrifera_M_contig83427:9..386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score144.8
Seed ortholog evalue2.7e-32
Seed eggNOG ortholog1313172.YM304_19520
Preferred nameyggS
KEGG koko:K06997
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008144,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363
EggNOG free text desc.Alanine racemase, N-terminal domain
EggNOG OGs2HGAF@201174,4CN9H@84992,COG0325@1,COG0325@2
COG Functional cat.S
Best tax levelAcidimicrobiia
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size378
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816741.10537-CDS-M-pyrifera_M_contig83427:8..3861622816741.10537-CDS-M-pyrifera_M_contig83427:8..386Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83427 9..386 +
1692278150.66308-CDS-M-pyrifera_M_contig83427:8..3861692278150.66308-CDS-M-pyrifera_M_contig83427:8..386Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83427 9..386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83427.19479.1prot_M-pyrifera_M_contig83427.19479.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83427 9..386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83427.19479.1

>prot_M-pyrifera_M_contig83427.19479.1 ID=prot_M-pyrifera_M_contig83427.19479.1|Name=mRNA_M-pyrifera_M_contig83427.19479.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
VSLWQTVDRLDLATEIAKRSPGARILVQVNTTGEPQKSGCEPIDVDQLVD
DSRALGLDVAGLMTVGPTAATDPRPAFALLRAKLDQLGLSVCSMGMSGDL
EAAVAEGTTMVRVGSALFGPRSAAR*
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mRNA from alignment at M-pyrifera_M_contig83427:9..386+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83427.19479.1 ID=mRNA_M-pyrifera_M_contig83427.19479.1|Name=mRNA_M-pyrifera_M_contig83427.19479.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig83427:9..386+ (Macrocystis pyrifera P11B4 male)
GTGTCGCTGTGGCAGACCGTCGATCGGTTGGATCTCGCGACGGAGATCGC CAAACGCTCTCCGGGCGCACGAATCCTCGTGCAGGTGAACACCACCGGCG AGCCGCAGAAATCTGGCTGTGAACCGATCGACGTCGACCAGTTGGTCGAT GACTCTCGGGCACTCGGCCTCGATGTCGCCGGACTGATGACGGTGGGCCC GACGGCCGCCACCGACCCTCGACCGGCGTTTGCCCTGCTCAGGGCCAAAC TCGACCAGCTCGGCCTGTCGGTGTGCTCGATGGGGATGTCCGGCGATCTC GAAGCAGCGGTCGCCGAAGGGACCACGATGGTCCGGGTCGGTTCGGCCTT GTTCGGGCCTCGAAGCGCTGCCCGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83427:9..386+

>mRNA_M-pyrifera_M_contig83427.19479.1 ID=mRNA_M-pyrifera_M_contig83427.19479.1|Name=mRNA_M-pyrifera_M_contig83427.19479.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig83427:9..386+ (Macrocystis pyrifera P11B4 male)
GTGTCGCTGTGGCAGACCGTCGATCGGTTGGATCTCGCGACGGAGATCGC
CAAACGCTCTCCGGGCGCACGAATCCTCGTGCAGGTGAACACCACCGGCG
AGCCGCAGAAATCTGGCTGTGAACCGATCGACGTCGACCAGTTGGTCGAT
GACTCTCGGGCACTCGGCCTCGATGTCGCCGGACTGATGACGGTGGGCCC
GACGGCCGCCACCGACCCTCGACCGGCGTTTGCCCTGCTCAGGGCCAAAC
TCGACCAGCTCGGCCTGTCGGTGTGCTCGATGGGGATGTCCGGCGATCTC
GAAGCAGCGGTCGCCGAAGGGACCACGATGGTCCGGGTCGGTTCGGCCTT
GTTCGGGCCTCGAAGCGCTGCCCGGTGAGTGTCGCTGTGGCAGACCGTCG
ATCGGTTGGATCTCGCGACGGAGATCGCCAAACGCTCTCCGGGCGCACGA
ATCCTCGTGCAGGTGAACACCACCGGCGAGCCGCAGAAATCTGGCTGTGA
ACCGATCGACGTCGACCAGTTGGTCGATGACTCTCGGGCACTCGGCCTCG
ATGTCGCCGGACTGATGACGGTGGGCCCGACGGCCGCCACCGACCCTCGA
CCGGCGTTTGCCCTGCTCAGGGCCAAACTCGACCAGCTCGGCCTGTCGGT
GTGCTCGATGGGGATGTCCGGCGATCTCGAAGCAGCGGTCGCCGAAGGGA
CCACGATGGTCCGGGTCGGTTCGGCCTTGTTCGGGCCTCGAAGCGCTGCC
CGGTGA
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