mRNA_M-pyrifera_M_contig83392.19478.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83392.19478.1
Unique NamemRNA_M-pyrifera_M_contig83392.19478.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83392.19478.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.830e-17
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 PECAGNVLSIGDGVCTAENNNQACGYDGGDCCLCTCSGRACVYSEFDCLDPSA 159
            P+C G+ L++GDG C+  NNN  CGYDGGDCC+C+C G  C+ + F+CLDPSA
Sbjct:   64 PDCTGDYLTVGDGSCSKANNNDLCGYDGGDCCVCSCQGVNCMRTSFECLDPSA 116
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BLAST of mRNA_M-pyrifera_M_contig83392.19478.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.830e-17
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 PECAGNVLSIGDGVCTAENNNQACGYDGGDCCLCTCSGRACVYSEFDCLDPSA 159
            P+C G+ L++GDG C+  NNN  CGYDGGDCC+C+C G  C+ + F+CLDPSA
Sbjct:  123 PDCTGDYLTVGDGSCSEANNNDLCGYDGGDCCVCSCQGVNCMTTSFECLDPSA 175
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BLAST of mRNA_M-pyrifera_M_contig83392.19478.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.050e-15
Identity = 35/53 (66.04%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 PECAGNVLSIGDGVCTAENNNQACGYDGGDCCLCTCSGRACVYSEFDCLDPSA 159
            PEC G+   IGDG C  ENNN ACGYDGGDCC+C+CSG  C     DCLDPSA
Sbjct:  225 PECTGSWSMIGDGQCQEENNNPACGYDGGDCCICSCSGTLCGGLA-DCLDPSA 276
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BLAST of mRNA_M-pyrifera_M_contig83392.19478.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 2.680e-15
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 PECAGNVLSIGDGVCTAENNNQACGYDGGDCCLCTCSGRACVYSEFDCLDPSA 159
            P+C    L +GDG C +E N  +CG+DGGDCC+C+C+G AC  S+FDC DP+A
Sbjct:  212 PDCDAGWLGLGDGFCDSELNTASCGWDGGDCCVCSCNGTACSISDFDCFDPNA 264
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BLAST of mRNA_M-pyrifera_M_contig83392.19478.1 vs. uniprot
Match: A0A6H5J6K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K0_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.010e-12
Identity = 30/56 (53.57%), Postives = 35/56 (62.50%), Query Frame = 1 
Query:    1 PECAGNVLSIGDGVCTAENNNQACGYDGGDCCLCTCSGR---ACVYSEFDCLDPSA 159
            PEC G +  IGDG C   NNN+ CG+DGGDCC CTC G    +C     DC DP+A
Sbjct:  221 PECEGYIYMIGDGSCDYYNNNEECGWDGGDCCSCTCEGSYYYSCSSYSMDCQDPNA 276
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BLAST of mRNA_M-pyrifera_M_contig83392.19478.1 vs. uniprot
Match: D7FI82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI82_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.950e-12
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   10 AGNVLSIGDGVCTAENNNQACGYDGGDCCLCTC-----SGRACVYSE--FDCLDPSA 159
            A ++ S+GDG+C  ENNN+ CGYDGGDCC CTC     +G   V  E  F C+DP+A
Sbjct:   10 AWDIASVGDGICDEENNNELCGYDGGDCCECTCVPSVSAGEYSVSCEYGFACIDPNA 66
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BLAST of mRNA_M-pyrifera_M_contig83392.19478.1 vs. uniprot
Match: A0A2E7W1A0_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7W1A0_9PROT)

HSP 1 Score: 67.8 bits (164), Expect = 6.590e-12
Identity = 28/50 (56.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:    1 PECAGNVLSIGDGVCTAENNNQACGYDGGDCCLCTCSGRACVYSEFDCLD 150
            P+CAGN   IGDG C A NNN+ CGYDGGDCC  +C      YS  +C D
Sbjct: 2104 PDCAGNPAGIGDGFCEAANNNELCGYDGGDCCADSCDATLDTYSCIECED 2153
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BLAST of mRNA_M-pyrifera_M_contig83392.19478.1 vs. uniprot
Match: D7G300_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G300_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 2.030e-11
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   13 GNVLSIGDGVCTAENNNQACGYDGGDCCLCTCSGR---ACVYSEFDCLDP 153
            G +  IG+G C AENN+ +CG+DGGDCC CTC+     +C  +EFDCL P
Sbjct:   31 GTIDDIGNGRCDAENNSPSCGFDGGDCCSCTCTDTVLYSCADNEFDCLYP 80
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BLAST of mRNA_M-pyrifera_M_contig83392.19478.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.290e-11
Identity = 28/53 (52.83%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:    7 CAGNVLSIGDGVCTAENNNQACGYDGGDCCLCTCSGR--ACVYSEFDCLDPSA 159
            C GN++ + DG C   NNN+ CGYDGGDCC CTC      C    F C+DPSA
Sbjct:  177 CGGNIVHLADGDCDQINNNEECGYDGGDCCFCTCLDDFYECGIRGFACIDPSA 229
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BLAST of mRNA_M-pyrifera_M_contig83392.19478.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.290e-11
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   16 NVLSIGDGVCTAENNNQACGYDGGDCCLCTC----SGRACVYSEFDCLDPSA 159
            + +SIGDG C  +NNN+AC YDGGDCC CTC    + R   +S F C+DP+A
Sbjct:  215 DTVSIGDGYCNMDNNNEACAYDGGDCCECTCEDTPNNRCGRWSSFACIDPAA 266
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83392.19478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2X5_ECTSI1.830e-1758.49Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5K7Z1_9PHAE1.830e-1758.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTI5_ECTSI1.050e-1566.04Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7G5Y7_ECTSI2.680e-1554.72Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5J6K0_9PHAE1.010e-1253.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI82_ECTSI1.950e-1252.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2E7W1A0_9PROT6.590e-1256.00Uncharacterized protein (Fragment) n=1 Tax=Rhodosp... [more]
D7G300_ECTSI2.030e-1154.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTT4_9PHAE2.290e-1152.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM92_9PHAE2.290e-1153.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83392contigM-pyrifera_M_contig83392:46..204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue9e-14
Seed eggNOG ortholog2880.D7G2X5
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816741.07098-CDS-M-pyrifera_M_contig83392:45..2041622816741.07098-CDS-M-pyrifera_M_contig83392:45..204Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83392 46..204 +
1692278150.6504486-CDS-M-pyrifera_M_contig83392:45..2041692278150.6504486-CDS-M-pyrifera_M_contig83392:45..204Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83392 46..204 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83392.19478.1prot_M-pyrifera_M_contig83392.19478.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83392 46..204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83392.19478.1

>prot_M-pyrifera_M_contig83392.19478.1 ID=prot_M-pyrifera_M_contig83392.19478.1|Name=mRNA_M-pyrifera_M_contig83392.19478.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=53bp
PECAGNVLSIGDGVCTAENNNQACGYDGGDCCLCTCSGRACVYSEFDCLD
PSA
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mRNA from alignment at M-pyrifera_M_contig83392:46..204+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83392.19478.1 ID=mRNA_M-pyrifera_M_contig83392.19478.1|Name=mRNA_M-pyrifera_M_contig83392.19478.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=159bp|location=Sequence derived from alignment at M-pyrifera_M_contig83392:46..204+ (Macrocystis pyrifera P11B4 male)
CCTGAATGTGCAGGCAATGTGTTATCGATAGGTGACGGAGTGTGTACCGC
TGAGAACAACAATCAGGCTTGCGGCTACGACGGAGGGGATTGCTGCTTGT
GTACCTGCAGTGGCCGTGCCTGTGTTTATAGCGAGTTCGACTGCCTGGAC
CCGAGCGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83392:46..204+

>mRNA_M-pyrifera_M_contig83392.19478.1 ID=mRNA_M-pyrifera_M_contig83392.19478.1|Name=mRNA_M-pyrifera_M_contig83392.19478.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig83392:46..204+ (Macrocystis pyrifera P11B4 male)
CCTGAATGTGCAGGCAATGTGTTATCGATAGGTGACGGAGTGTGTACCGC
TGAGAACAACAATCAGGCTTGCGGCTACGACGGAGGGGATTGCTGCTTGT
GTACCTGCAGTGGCCGTGCCTGTGTTTATAGCGAGTTCGACTGCCTGGAC
CCGAGCGCTCCTGAATGTGCAGGCAATGTGTTATCGATAGGTGACGGAGT
GTGTACCGCTGAGAACAACAATCAGGCTTGCGGCTACGACGGAGGGGATT
GCTGCTTGTGTACCTGCAGTGGCCGTGCCTGTGTTTATAGCGAGTTCGAC
TGCCTGGACCCGAGCGCT
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