mRNA_M-pyrifera_M_contig83382.19475.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83382.19475.1
Unique NamemRNA_M-pyrifera_M_contig83382.19475.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83382.19475.1 vs. uniprot
Match: A0A2E7KHD5_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KHD5_9PLAN)

HSP 1 Score: 140 bits (352), Expect = 4.020e-41
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 
Query:    4 MRVVAKLLVVVLIIAFVRSNRNSKNDKPAPPIEPSAVIENNGAEHRLYRGVKLLDVFETLPTSAIDTLDADTR 222
            MRVVAKLLVVVLIIAFVRSNRNSKNDKPAPPIEPSAVIENNGAEHRLYRGVKLLDVFETLPTSAIDTLDADTR
Sbjct:    1 MRVVAKLLVVVLIIAFVRSNRNSKNDKPAPPIEPSAVIENNGAEHRLYRGVKLLDVFETLPTSAIDTLDADTR 73
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83382.19475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2E7KHD5_9PLAN4.020e-41100.00Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83382contigM-pyrifera_M_contig83382:669..893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size225
Cds size222
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816740.8709965-UTR-M-pyrifera_M_contig83382:668..6711622816740.8709965-UTR-M-pyrifera_M_contig83382:668..671Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83382 669..671 +
1692278150.5304852-UTR-M-pyrifera_M_contig83382:668..6711692278150.5304852-UTR-M-pyrifera_M_contig83382:668..671Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83382 669..671 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816740.883993-CDS-M-pyrifera_M_contig83382:671..8931622816740.883993-CDS-M-pyrifera_M_contig83382:671..893Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83382 672..893 +
1692278150.540349-CDS-M-pyrifera_M_contig83382:671..8931692278150.540349-CDS-M-pyrifera_M_contig83382:671..893Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83382 672..893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83382.19475.1prot_M-pyrifera_M_contig83382.19475.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83382 672..893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83382.19475.1

>prot_M-pyrifera_M_contig83382.19475.1 ID=prot_M-pyrifera_M_contig83382.19475.1|Name=mRNA_M-pyrifera_M_contig83382.19475.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
MRVVAKLLVVVLIIAFVRSNRNSKNDKPAPPIEPSAVIENNGAEHRLYRG
VKLLDVFETLPTSAIDTLDADTRT
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mRNA from alignment at M-pyrifera_M_contig83382:669..893+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83382.19475.1 ID=mRNA_M-pyrifera_M_contig83382.19475.1|Name=mRNA_M-pyrifera_M_contig83382.19475.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=225bp|location=Sequence derived from alignment at M-pyrifera_M_contig83382:669..893+ (Macrocystis pyrifera P11B4 male)
ATCATGCGAGTTGTGGCGAAGTTGCTGGTTGTGGTTCTGATTATTGCATT
CGTGCGATCCAACCGGAATTCAAAAAACGACAAACCGGCGCCACCAATTG
AACCTTCCGCGGTGATCGAAAATAACGGTGCGGAACACAGGCTCTATCGA
GGCGTCAAATTACTGGATGTCTTTGAGACGCTCCCGACCAGTGCCATCGA
TACGCTCGATGCGGATACCCGCACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83382:669..893+

>mRNA_M-pyrifera_M_contig83382.19475.1 ID=mRNA_M-pyrifera_M_contig83382.19475.1|Name=mRNA_M-pyrifera_M_contig83382.19475.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig83382:669..893+ (Macrocystis pyrifera P11B4 male)
ATGCGAGTTGTGGCGAAGTTGCTGGTTGTGGTTCTGATTATTGCATTCGT
GCGATCCAACCGGAATTCAAAAAACGACAAACCGGCGCCACCAATTGAAC
CTTCCGCGGTGATCGAAAATAACGGTGCGGAACACAGGCTCTATCGAGGC
GTCAAATTACTGGATGTCTTTGAGACGCTCCCGACCAGTGCCATCGATAC
GCTCGATGCGGATACCCGCACCATGCGAGTTGTGGCGAAGTTGCTGGTTG
TGGTTCTGATTATTGCATTCGTGCGATCCAACCGGAATTCAAAAAACGAC
AAACCGGCGCCACCAATTGAACCTTCCGCGGTGATCGAAAATAACGGTGC
GGAACACAGGCTCTATCGAGGCGTCAAATTACTGGATGTCTTTGAGACGC
TCCCGACCAGTGCCATCGATACGCTCGATGCGGATACCCGCACC
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