mRNA_M-pyrifera_M_contig83382.19474.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83382.19474.1
Unique NamemRNA_M-pyrifera_M_contig83382.19474.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83382.19474.1 vs. uniprot
Match: A0A2E7KGQ7_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KGQ7_9PLAN)

HSP 1 Score: 319 bits (818), Expect = 3.800e-110
Identity = 159/167 (95.21%), Postives = 162/167 (97.01%), Query Frame = 1 
Query:    1 MTDLDRRAENYLQKSMQALVGFVGSYIFLAYVFMFLGLLLFETDLTWPEEKRQSFILWLTFGLACGFAVFTVFYGSKKLSRFWLWFLLIFSLSSLIQVVPEKGSLHVELNQNWPQWTTASLYVRSNFHPVKLIILAIHASLALGLAWLLPFCWSRLFQSRTALRNSD 501
            MTDLDRRAENYLQKSMQALVGFVGSYIFLAY+FMFLGLLL +TDLTWPEEKRQSFILWLTFGLACGFAVFTV YGSKKLSRFWLWFLLIFSLSSLIQVVPEKGSLHVELNQNWPQWT ASLYVRSNFHPVKLI+LAIHASLALGLAWLL  CWSRLFQSRTALRNSD
Sbjct:    1 MTDLDRRAENYLQKSMQALVGFVGSYIFLAYMFMFLGLLLIDTDLTWPEEKRQSFILWLTFGLACGFAVFTVSYGSKKLSRFWLWFLLIFSLSSLIQVVPEKGSLHVELNQNWPQWTIASLYVRSNFHPVKLIVLAIHASLALGLAWLLRSCWSRLFQSRTALRNSD 167
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BLAST of mRNA_M-pyrifera_M_contig83382.19474.1 vs. uniprot
Match: A6C7N9_9PLAN (Uncharacterized protein n=1 Tax=Gimesia maris DSM 8797 TaxID=344747 RepID=A6C7N9_9PLAN)

HSP 1 Score: 196 bits (499), Expect = 1.380e-61
Identity = 97/159 (61.01%), Postives = 119/159 (74.84%), Query Frame = 1 
Query:   22 AENYLQKSMQALVGFVGSYIFLAYVFMFLGLLLFETDLTWPEEKRQSFILWLTFGLACGFAVFTVFYGSKKLSRFWLWFLLIFSLSSLIQVVPEKGSLHVELNQNWPQWTTASLYVRSNFHPVKLIILAIHASLALGLAWLLPFCWSRLFQSRTALRNS 498
            AE  L K++QA+VGFVGSYI L YVFMFLGL+L ETDLTWPE+K QSF+  LTF LACGF +FTV YG+ K+SRFWLWFL++FSL+SL+Q++P  G L VELN  WP+WT  SLYV++    VKL++L IH  L+LGLAW     W RLF   T   +S
Sbjct:    7 AETVLAKTVQAVVGFVGSYIILIYVFMFLGLMLPETDLTWPEQKMQSFMFCLTFALACGFGLFTVCYGTIKVSRFWLWFLIVFSLTSLLQLMPGDGGLRVELNLGWPRWTIVSLYVQAKLSMVKLVVLLIHVCLSLGLAWCFHSGWPRLFHQSTPHTSS 165
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BLAST of mRNA_M-pyrifera_M_contig83382.19474.1 vs. uniprot
Match: A0A355G912_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A355G912_9PLAN)

HSP 1 Score: 169 bits (429), Expect = 6.330e-51
Identity = 86/162 (53.09%), Postives = 115/162 (70.99%), Query Frame = 1 
Query:    1 MTDLDRRAE-NYLQKSMQALVGFVGSYIFLAYVFMFLGLLLFETDLTWPEEKRQSFILWLTFGLACGFAVFTVFYGSKKLSRFWLWFLLIFSLSSLIQVVPEKGSLHVELNQNWPQWTTASLYVRSNFHPVKLIILAIHASLALGLAWLLPFCWSRLFQSRT 483
            M D  RRAE N L KS++A+VG  G+Y+FL YVF+FLGLL  +  L   E + Q+F+LWL F LACGF +FT F G+ K+SRFW WFL++F L+SL+Q+VP KG L  EL  +WPQWT A++YVR  F  +KL++L IH  L+LG+AW +     RLF+ +T
Sbjct:    1 MMDPGRRAEKNILVKSVRAVVGLAGAYVFLTYVFLFLGLLQLDPVLNLAESRMQTFLLWLIFALACGFGLFTAFSGTVKVSRFWHWFLVMFGLTSLLQIVPGKGGLRPELYLDWPQWTVAAVYVRPGFQFIKLVVLLIHVGLSLGVAWGIHSGCPRLFRWQT 162
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BLAST of mRNA_M-pyrifera_M_contig83382.19474.1 vs. uniprot
Match: A0A517T611_9PLAN (Uncharacterized protein n=1 Tax=Calycomorphotria hydatis TaxID=2528027 RepID=A0A517T611_9PLAN)

HSP 1 Score: 60.5 bits (145), Expect = 2.320e-8
Identity = 43/134 (32.09%), Postives = 67/134 (50.00%), Query Frame = 1 
Query:   43 SMQALVGFVGSYIFLAYVFMFLGLLLFETDLTWPE--EKRQSFILWLTFGLACGFAVFTVFYGSKKLSRFWLWFLLIFSLSSLIQVVPEKGSLHVELNQNWPQWTTASLYVRSNFHPVKLIILAIHASLALGLA 438
            +++A VGF    +   Y  +F G L+  +DL   E    R ++ L L FGL   F++       +K+SRFWLWF+L F    ++  +P KG + + L          + YV   F  + L+IL  H  L+LG+A
Sbjct:   19 TLKAAVGFFVGVVLAYYFLVFTGALIPHSDLNSSEIVRNRNAYRLVLLFGLV--FSIPAAVLSHRKVSRFWLWFVLAFGAICVLPCLPFKGGVLLPLG---------TPYVNYGFQRLDLVILIFHVLLSLGIA 141
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83382.19474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2E7KGQ7_9PLAN3.800e-11095.21Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A6C7N9_9PLAN1.380e-6161.01Uncharacterized protein n=1 Tax=Gimesia maris DSM ... [more]
A0A355G912_9PLAN6.330e-5153.09Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A517T611_9PLAN2.320e-832.09Uncharacterized protein n=1 Tax=Calycomorphotria h... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83382contigM-pyrifera_M_contig83382:109..612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size504
Cds size504
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816740.8338838-CDS-M-pyrifera_M_contig83382:108..6121622816740.8338838-CDS-M-pyrifera_M_contig83382:108..612Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83382 109..612 +
1692278150.520038-CDS-M-pyrifera_M_contig83382:108..6121692278150.520038-CDS-M-pyrifera_M_contig83382:108..612Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83382 109..612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83382.19474.1prot_M-pyrifera_M_contig83382.19474.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83382 109..612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83382.19474.1

>prot_M-pyrifera_M_contig83382.19474.1 ID=prot_M-pyrifera_M_contig83382.19474.1|Name=mRNA_M-pyrifera_M_contig83382.19474.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=168bp
MTDLDRRAENYLQKSMQALVGFVGSYIFLAYVFMFLGLLLFETDLTWPEE
KRQSFILWLTFGLACGFAVFTVFYGSKKLSRFWLWFLLIFSLSSLIQVVP
EKGSLHVELNQNWPQWTTASLYVRSNFHPVKLIILAIHASLALGLAWLLP
FCWSRLFQSRTALRNSD*
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mRNA from alignment at M-pyrifera_M_contig83382:109..612+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83382.19474.1 ID=mRNA_M-pyrifera_M_contig83382.19474.1|Name=mRNA_M-pyrifera_M_contig83382.19474.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig83382:109..612+ (Macrocystis pyrifera P11B4 male)
ATGACGGATCTGGACCGACGAGCAGAAAATTATCTGCAGAAAAGTATGCA
GGCGTTGGTTGGCTTTGTTGGCTCTTATATTTTTCTCGCCTACGTGTTTA
TGTTTCTGGGGCTGTTACTGTTTGAAACTGATTTGACCTGGCCTGAAGAG
AAGCGGCAGTCATTCATACTCTGGCTCACTTTCGGTCTCGCTTGCGGGTT
TGCCGTTTTCACGGTCTTCTATGGAAGCAAAAAACTCTCCCGCTTCTGGC
TCTGGTTTTTGTTGATATTCAGTCTGAGTTCCCTGATCCAGGTTGTACCG
GAAAAGGGAAGTTTACATGTTGAGTTGAATCAGAACTGGCCTCAATGGAC
GACCGCTTCTCTATATGTTCGATCGAACTTTCATCCTGTCAAACTGATCA
TCTTGGCAATTCATGCTTCCCTGGCGCTGGGATTAGCCTGGCTCCTTCCT
TTTTGCTGGTCGCGACTGTTTCAGTCACGAACGGCGCTGCGAAATTCTGA
TTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83382:109..612+

>mRNA_M-pyrifera_M_contig83382.19474.1 ID=mRNA_M-pyrifera_M_contig83382.19474.1|Name=mRNA_M-pyrifera_M_contig83382.19474.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1008bp|location=Sequence derived from alignment at M-pyrifera_M_contig83382:109..612+ (Macrocystis pyrifera P11B4 male)
ATGACGGATCTGGACCGACGAGCAGAAAATTATCTGCAGAAAAGTATGCA
GGCGTTGGTTGGCTTTGTTGGCTCTTATATTTTTCTCGCCTACGTGTTTA
TGTTTCTGGGGCTGTTACTGTTTGAAACTGATTTGACCTGGCCTGAAGAG
AAGCGGCAGTCATTCATACTCTGGCTCACTTTCGGTCTCGCTTGCGGGTT
TGCCGTTTTCACGGTCTTCTATGGAAGCAAAAAACTCTCCCGCTTCTGGC
TCTGGTTTTTGTTGATATTCAGTCTGAGTTCCCTGATCCAGGTTGTACCG
GAAAAGGGAAGTTTACATGTTGAGTTGAATCAGAACTGGCCTCAATGGAC
GACCGCTTCTCTATATGTTCGATCGAACTTTCATCCTGTCAAACTGATCA
TCTTGGCAATTCATGCTTCCCTGGCGCTGGGATTAGCCTGGCTCCTTCCT
TTTTGCTGGTCGCGACTGTTTCAGTCACGAACGGCGCTGCGAAATTCTGA
TTGAATGACGGATCTGGACCGACGAGCAGAAAATTATCTGCAGAAAAGTA
TGCAGGCGTTGGTTGGCTTTGTTGGCTCTTATATTTTTCTCGCCTACGTG
TTTATGTTTCTGGGGCTGTTACTGTTTGAAACTGATTTGACCTGGCCTGA
AGAGAAGCGGCAGTCATTCATACTCTGGCTCACTTTCGGTCTCGCTTGCG
GGTTTGCCGTTTTCACGGTCTTCTATGGAAGCAAAAAACTCTCCCGCTTC
TGGCTCTGGTTTTTGTTGATATTCAGTCTGAGTTCCCTGATCCAGGTTGT
ACCGGAAAAGGGAAGTTTACATGTTGAGTTGAATCAGAACTGGCCTCAAT
GGACGACCGCTTCTCTATATGTTCGATCGAACTTTCATCCTGTCAAACTG
ATCATCTTGGCAATTCATGCTTCCCTGGCGCTGGGATTAGCCTGGCTCCT
TCCTTTTTGCTGGTCGCGACTGTTTCAGTCACGAACGGCGCTGCGAAATT
CTGATTGA
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