mRNA_M-pyrifera_M_contig83355.19464.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83355.19464.1
Unique NamemRNA_M-pyrifera_M_contig83355.19464.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83355.19464.1 vs. uniprot
Match: A0A7Y2ID63_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2ID63_9ACTN)

HSP 1 Score: 315 bits (806), Expect = 5.890e-104
Identity = 145/201 (72.14%), Postives = 171/201 (85.07%), Query Frame = 1 
Query:    1 IAIAEFDPASDSWLYGPEFKGTDRQAEIVAGLGLLETTTLWTGTEIVVWRSTNGGIAFNPITESWRTIPHPQSPSGLIHSSIAVQLDDGMAVLAQVENNDGVTVDVAVLQEDGWRWLETDIPVSDFESITLAGAGDWIAMFSADEDPVLVHLPSGEWQRETEGPLGGIQAPNTAWTGTQLIVWGGVTDDADAADGATWTPP 603
            +AIA +DP SDSW YGP F+GTD QAEIVAGL  LE+TT+WTGTEIVVW ST+GGIAFNP+TESWRT+PHPQSPSGLIH S+AV++DDGMAVLA+VEN+DGV VDVAVL+++ W+W ET I +  FES+T+AGAG+WI  F+AD+ PV++HLPSG WQR T GPL GI APNTAWTG QLIVWGGV  DADA +GA WT P
Sbjct:  226 LAIARYDPESDSWQYGPVFEGTDDQAEIVAGLARLESTTVWTGTEIVVWHSTDGGIAFNPVTESWRTMPHPQSPSGLIHGSVAVEIDDGMAVLAEVENSDGVAVDVAVLRDEDWQWHETGIDIPGFESVTVAGAGEWIVAFTADQAPVVIHLPSGAWQR-TGGPLSGIDAPNTAWTGDQLIVWGGVKADADAPNGARWTAP 425
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BLAST of mRNA_M-pyrifera_M_contig83355.19464.1 vs. uniprot
Match: A0A349AZK8_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349AZK8_9ACTN)

HSP 1 Score: 107 bits (267), Expect = 1.960e-23
Identity = 69/210 (32.86%), Postives = 101/210 (48.10%), Query Frame = 1 
Query:    1 IAIAEFDPASDSWLYGPEFKGTDRQAEIVAGLGLLETTTLWTGTEIVVWRSTNGGIAFNPITESWRTIPHPQSPSGLIHSSIAVQLDDGMAVLAQ-VENNDGVTVDVAVLQEDGW-RWLETD---IPVSDFESITLAGAGDWIAMFSADEDPVLVHLPSGEWQRETEGPLGGIQAPNTAWTGTQLIVWGGVT---DDADAADGATWTPPD 606
            + IA +D  ++ W  G +  G D     +  L  L    LWTG  +VVW       A++     W  +P      G + ++ AV    G+ VL + + N D V   V  L+ DG  RW  +D   +PV D +  T+  AG+WI +   +  PV +H  SG      + P+ GI+ P T WTGT+L+VWGGV    +D  A  G  WT P+
Sbjct:  219 LGIAFYDAGTERWDDGGDL-GPDAADPALEALTNLAQPVLWTGNAVVVWAQPRA-FAYDTTEGRWAPLPPLPELDGDVVATRAVADGSGLVVLVESIRNGDHV---VTALRWDGADRWSSSDDVELPVEDLDRTTVGIAGEWIMLLPPEGPPVSLHPASGTSHVHADAPIQGIEGPGTVWTGTELVVWGGVFAEGNDLPAGAGMIWTAPE 423
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BLAST of mRNA_M-pyrifera_M_contig83355.19464.1 vs. uniprot
Match: A0A1H3UGH2_9ACTN (Galactose oxidase, central domain n=1 Tax=Asanoa ishikariensis TaxID=137265 RepID=A0A1H3UGH2_9ACTN)

HSP 1 Score: 53.9 bits (128), Expect = 4.490e-5
Identity = 23/53 (43.40%), Postives = 31/53 (58.49%), Query Frame = 1 
Query:  448 VHLPSGEWQRETEGPLGGIQAPNTAWTGTQLIVWGGVTDDADAADGATWTPPD 606
            + L +G W R    P+ G     TAWTGT+++VWGG   D+  ADGA + P D
Sbjct:   88 IALAAGRWSRLPSAPIPGRSDAATAWTGTEMLVWGGRVADSARADGAAYRPSD 140
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83355.19464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7Y2ID63_9ACTN5.890e-10472.14Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
A0A349AZK8_9ACTN1.960e-2332.86Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A1H3UGH2_9ACTN4.490e-543.40Galactose oxidase, central domain n=1 Tax=Asanoa i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83355contigM-pyrifera_M_contig83355:283..891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size609
Cds size609
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816740.410676-CDS-M-pyrifera_M_contig83355:282..8911622816740.410676-CDS-M-pyrifera_M_contig83355:282..891Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83355 283..891 -
1692278150.3556166-CDS-M-pyrifera_M_contig83355:282..8911692278150.3556166-CDS-M-pyrifera_M_contig83355:282..891Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83355 283..891 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83355.19464.1prot_M-pyrifera_M_contig83355.19464.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83355 283..891 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83355.19464.1

>prot_M-pyrifera_M_contig83355.19464.1 ID=prot_M-pyrifera_M_contig83355.19464.1|Name=mRNA_M-pyrifera_M_contig83355.19464.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=203bp
IAIAEFDPASDSWLYGPEFKGTDRQAEIVAGLGLLETTTLWTGTEIVVWR
STNGGIAFNPITESWRTIPHPQSPSGLIHSSIAVQLDDGMAVLAQVENND
GVTVDVAVLQEDGWRWLETDIPVSDFESITLAGAGDWIAMFSADEDPVLV
HLPSGEWQRETEGPLGGIQAPNTAWTGTQLIVWGGVTDDADAADGATWTP
PD*
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mRNA from alignment at M-pyrifera_M_contig83355:283..891-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83355.19464.1 ID=mRNA_M-pyrifera_M_contig83355.19464.1|Name=mRNA_M-pyrifera_M_contig83355.19464.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=609bp|location=Sequence derived from alignment at M-pyrifera_M_contig83355:283..891- (Macrocystis pyrifera P11B4 male)
ATTGCCATCGCCGAGTTCGACCCCGCGTCAGACAGCTGGCTCTACGGGCC
GGAGTTCAAGGGAACGGACCGGCAGGCCGAGATCGTTGCTGGACTGGGAC
TACTCGAAACCACCACGCTGTGGACAGGGACCGAAATCGTTGTCTGGCGC
AGCACCAACGGGGGAATTGCTTTCAATCCCATCACCGAATCGTGGCGCAC
AATCCCGCACCCTCAATCACCGTCGGGCCTCATCCACAGCAGCATCGCCG
TGCAACTCGACGACGGTATGGCTGTTCTCGCCCAGGTCGAGAACAACGAC
GGTGTCACCGTGGACGTGGCGGTGCTGCAAGAGGATGGTTGGCGATGGCT
CGAGACCGACATCCCCGTGTCCGACTTCGAGTCGATCACCCTCGCCGGAG
CCGGGGACTGGATCGCCATGTTCTCCGCAGACGAGGATCCAGTGTTGGTT
CACCTGCCCTCAGGGGAATGGCAACGAGAAACTGAAGGGCCGCTCGGAGG
GATCCAAGCGCCGAACACTGCGTGGACCGGAACCCAACTCATCGTCTGGG
GCGGCGTCACCGACGATGCCGACGCCGCTGACGGCGCAACATGGACTCCG
CCCGACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83355:283..891-

>mRNA_M-pyrifera_M_contig83355.19464.1 ID=mRNA_M-pyrifera_M_contig83355.19464.1|Name=mRNA_M-pyrifera_M_contig83355.19464.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1218bp|location=Sequence derived from alignment at M-pyrifera_M_contig83355:283..891- (Macrocystis pyrifera P11B4 male)
ATTGCCATCGCCGAGTTCGACCCCGCGTCAGACAGCTGGCTCTACGGGCC
GGAGTTCAAGGGAACGGACCGGCAGGCCGAGATCGTTGCTGGACTGGGAC
TACTCGAAACCACCACGCTGTGGACAGGGACCGAAATCGTTGTCTGGCGC
AGCACCAACGGGGGAATTGCTTTCAATCCCATCACCGAATCGTGGCGCAC
AATCCCGCACCCTCAATCACCGTCGGGCCTCATCCACAGCAGCATCGCCG
TGCAACTCGACGACGGTATGGCTGTTCTCGCCCAGGTCGAGAACAACGAC
GGTGTCACCGTGGACGTGGCGGTGCTGCAAGAGGATGGTTGGCGATGGCT
CGAGACCGACATCCCCGTGTCCGACTTCGAGTCGATCACCCTCGCCGGAG
CCGGGGACTGGATCGCCATGTTCTCCGCAGACGAGGATCCAGTGTTGGTT
CACCTGCCCTCAGGGGAATGGCAACGAGAAACTGAAGGGCCGCTCGGAGG
GATCCAAGCGCCGAACACTGCGTGGACCGGAACCCAACTCATCGTCTGGG
GCGGCGTCACCGACGATGCCGACGCCGCTGACGGCGCAACATGGACTCCG
CCCGACTGAATTGCCATCGCCGAGTTCGACCCCGCGTCAGACAGCTGGCT
CTACGGGCCGGAGTTCAAGGGAACGGACCGGCAGGCCGAGATCGTTGCTG
GACTGGGACTACTCGAAACCACCACGCTGTGGACAGGGACCGAAATCGTT
GTCTGGCGCAGCACCAACGGGGGAATTGCTTTCAATCCCATCACCGAATC
GTGGCGCACAATCCCGCACCCTCAATCACCGTCGGGCCTCATCCACAGCA
GCATCGCCGTGCAACTCGACGACGGTATGGCTGTTCTCGCCCAGGTCGAG
AACAACGACGGTGTCACCGTGGACGTGGCGGTGCTGCAAGAGGATGGTTG
GCGATGGCTCGAGACCGACATCCCCGTGTCCGACTTCGAGTCGATCACCC
TCGCCGGAGCCGGGGACTGGATCGCCATGTTCTCCGCAGACGAGGATCCA
GTGTTGGTTCACCTGCCCTCAGGGGAATGGCAACGAGAAACTGAAGGGCC
GCTCGGAGGGATCCAAGCGCCGAACACTGCGTGGACCGGAACCCAACTCA
TCGTCTGGGGCGGCGTCACCGACGATGCCGACGCCGCTGACGGCGCAACA
TGGACTCCGCCCGACTGA
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