mRNA_M-pyrifera_M_contig83333.19462.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83333.19462.1
Unique NamemRNA_M-pyrifera_M_contig83333.19462.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83333.19462.1 vs. uniprot
Match: D8LB56_ECTSI (Glyoxalase domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB56_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 3.860e-26
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:    1 GAWSKTMIGYGPEEEGFALELTYNYGIDSYKNGDDLQHICLQRDVEATKAKA 156
            GAWSKTMIGYGPEEEGFALELTYNYGID YKNGDDLQ+ICLQ DVEATKAKA
Sbjct:   56 GAWSKTMIGYGPEEEGFALELTYNYGIDGYKNGDDLQYICLQLDVEATKAKA 107
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BLAST of mRNA_M-pyrifera_M_contig83333.19462.1 vs. uniprot
Match: A0A7S3UZB1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZB1_HETAK)

HSP 1 Score: 83.2 bits (204), Expect = 1.970e-17
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 GAWSKTMIGYGPEEEGFALELTYNYGIDSYKNGDDLQHICLQRDVEATKAKA 156
            GAWSKTMIG GPEE+ FALELTYNYGID+Y+ GDDLQ++CL  D+   +AKA
Sbjct:  299 GAWSKTMIGRGPEEQHFALELTYNYGIDAYRAGDDLQYLCLSGDLAEYEAKA 350
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BLAST of mRNA_M-pyrifera_M_contig83333.19462.1 vs. uniprot
Match: A0A7S3UXG7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXG7_HETAK)

HSP 1 Score: 83.2 bits (204), Expect = 2.380e-17
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 GAWSKTMIGYGPEEEGFALELTYNYGIDSYKNGDDLQHICLQRDVEATKAKA 156
            GAWSKTMIG GPEE+ FALELTYNYGID+Y+ GDDLQ++CL  D+   +AKA
Sbjct:  470 GAWSKTMIGRGPEEQHFALELTYNYGIDAYRAGDDLQYLCLSGDLAEYEAKA 521
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BLAST of mRNA_M-pyrifera_M_contig83333.19462.1 vs. uniprot
Match: A0A7S2V7L4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7L4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.330e-16
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 GAWSKTMIGYGPEEEGFALELTYNYGIDSYKNGDDLQHICLQ-RDVEATKAKA 156
            GAWSKTMIGYGPE+E FALELTYNYGIDSY+ G+DLQ+I L   D++A   KA
Sbjct:   50 GAWSKTMIGYGPEKENFALELTYNYGIDSYEFGNDLQYIALGVEDIKAVLNKA 102
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BLAST of mRNA_M-pyrifera_M_contig83333.19462.1 vs. uniprot
Match: A0A835YGN6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGN6_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 7.300e-16
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 GAWSKTMIGYGPEEEGFALELTYNYGIDSYKNGDDLQHICLQRDVEATKAK 153
            GAWSKTM+GYGPE + FALELTYNYGIDSY +GDDLQ+I +   +   +AK
Sbjct:   59 GAWSKTMVGYGPERDNFALELTYNYGIDSYASGDDLQYIAVASPMALERAK 109
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BLAST of mRNA_M-pyrifera_M_contig83333.19462.1 vs. uniprot
Match: A0A7S2V5K7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5K7_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.620e-15
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 GAWSKTMIGYGPEEEGFALELTYNYGIDSYKNGDDLQHICLQRDVEAT-KAKA 156
            GAWSKTMIGYGPE+E FALELTYNYGIDSY+ G+DLQ+I L     A  +AKA
Sbjct:  115 GAWSKTMIGYGPEKEHFALELTYNYGIDSYEFGNDLQYIALAAPAGAADRAKA 167
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BLAST of mRNA_M-pyrifera_M_contig83333.19462.1 vs. uniprot
Match: A0A7S2V686_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V686_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.840e-15
Identity = 36/52 (69.23%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 GAWSKTMIGYGPEEEGFALELTYNYGIDSYKNGDDLQHICLQRDVEATKAKA 156
            GAWSKTMIGYGPE E FALELTYNYGID Y+ G+DLQ+I L       +AKA
Sbjct:  115 GAWSKTMIGYGPERENFALELTYNYGIDGYEFGNDLQYIALACPYAFVRAKA 166
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BLAST of mRNA_M-pyrifera_M_contig83333.19462.1 vs. uniprot
Match: A0A7S3UYM7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UYM7_HETAK)

HSP 1 Score: 73.6 bits (179), Expect = 5.620e-14
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 GAWSKTMIGYGPEEEGFALELTYNYGIDSYKNGDDLQHICLQRDVEATKAKA 156
            G WSKTM+GYGPE+E FALELTYNYGID+Y+ G+D Q+I +       +AKA
Sbjct:  195 GQWSKTMVGYGPEKENFALELTYNYGIDAYEFGNDYQYIGVAEPAALARAKA 246
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BLAST of mRNA_M-pyrifera_M_contig83333.19462.1 vs. uniprot
Match: A0A226CZV9_FOLCA (Glyoxalase domain-containing protein 4 n=2 Tax=Folsomia candida TaxID=158441 RepID=A0A226CZV9_FOLCA)

HSP 1 Score: 71.2 bits (173), Expect = 2.580e-13
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 GAWSKTMIGYGPEEEGFALELTYNYGIDSYKNGDDLQHIC-LQRDVEATKAKA 156
            G WSKTM+GYGPE++ F LELTYNYG+DSY   + +++IC L+RDV A +A A
Sbjct:   56 GKWSKTMVGYGPEDKNFVLELTYNYGVDSYIVTECIEYICVLRRDVTAARAVA 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig83333.19462.1 vs. uniprot
Match: A0A7S2UYR5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYR5_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.750e-13
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 GAWSKTMIGYGPEEEGFALELTYNYGIDSYKNGDDLQHI-----CLQRDVE 138
            GAWSKTMIG+G EE  FALELTYNYGIDSY+ GDD ++I     CL+ D E
Sbjct:  119 GAWSKTMIGFGKEETNFALELTYNYGIDSYEAGDDYRYIAVNSKCLKADPE 169
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83333.19462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB56_ECTSI3.860e-2694.23Glyoxalase domain containing protein n=2 Tax=Ectoc... [more]
A0A7S3UZB1_HETAK1.970e-1771.15Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3UXG7_HETAK2.380e-1771.15Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2V7L4_9STRA1.330e-1671.70Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835YGN6_9STRA7.300e-1666.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V5K7_9STRA1.620e-1571.70Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2V686_9STRA1.840e-1569.23Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3UYM7_HETAK5.620e-1461.54Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A226CZV9_FOLCA2.580e-1360.38Glyoxalase domain-containing protein 4 n=2 Tax=Fol... [more]
A0A7S2UYR5_9STRA3.750e-1366.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83333contigM-pyrifera_M_contig83333:174..329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue2e-17
Seed eggNOG ortholog2880.D8LB56
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.methylglyoxal metabolic process
EggNOG OGsCOG0346@1,COG0526@1,KOG0907@2759,KOG2943@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Exons1
Model size156
Cds size138
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816740.319807-CDS-M-pyrifera_M_contig83333:173..3111622816740.319807-CDS-M-pyrifera_M_contig83333:173..311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83333 174..311 -
1692278150.3096793-CDS-M-pyrifera_M_contig83333:173..3111692278150.3096793-CDS-M-pyrifera_M_contig83333:173..311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83333 174..311 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816740.330774-UTR-M-pyrifera_M_contig83333:311..3291622816740.330774-UTR-M-pyrifera_M_contig83333:311..329Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83333 312..329 -
1692278150.3211339-UTR-M-pyrifera_M_contig83333:311..3291692278150.3211339-UTR-M-pyrifera_M_contig83333:311..329Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83333 312..329 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83333.19462.1prot_M-pyrifera_M_contig83333.19462.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83333 174..311 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83333.19462.1

>prot_M-pyrifera_M_contig83333.19462.1 ID=prot_M-pyrifera_M_contig83333.19462.1|Name=mRNA_M-pyrifera_M_contig83333.19462.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=46bp
MIGYGPEEEGFALELTYNYGIDSYKNGDDLQHICLQRDVEATKAKA
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mRNA from alignment at M-pyrifera_M_contig83333:174..329-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83333.19462.1 ID=mRNA_M-pyrifera_M_contig83333.19462.1|Name=mRNA_M-pyrifera_M_contig83333.19462.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=156bp|location=Sequence derived from alignment at M-pyrifera_M_contig83333:174..329- (Macrocystis pyrifera P11B4 male)
GGCGCGTGGTCTAAGACGATGATCGGGTACGGGCCGGAGGAGGAAGGCTT
CGCGCTTGAGCTGACGTACAACTACGGCATCGACAGCTACAAGAACGGGG
ACGACCTGCAGCACATCTGCCTCCAGCGCGACGTGGAGGCGACCAAGGCG
AAGGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83333:174..329-

>mRNA_M-pyrifera_M_contig83333.19462.1 ID=mRNA_M-pyrifera_M_contig83333.19462.1|Name=mRNA_M-pyrifera_M_contig83333.19462.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig83333:174..329- (Macrocystis pyrifera P11B4 male)
ATGATCGGGTACGGGCCGGAGGAGGAAGGCTTCGCGCTTGAGCTGACGTA
CAACTACGGCATCGACAGCTACAAGAACGGGGACGACCTGCAGCACATCT
GCCTCCAGCGCGACGTGGAGGCGACCAAGGCGAAGGCAATGATCGGGTAC
GGGCCGGAGGAGGAAGGCTTCGCGCTTGAGCTGACGTACAACTACGGCAT
CGACAGCTACAAGAACGGGGACGACCTGCAGCACATCTGCCTCCAGCGCG
ACGTGGAGGCGACCAAGGCGAAGGCA
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