mRNA_M-pyrifera_M_contig109336.1946.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109336.1946.1
Unique NamemRNA_M-pyrifera_M_contig109336.1946.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109336.1946.1 vs. uniprot
Match: A0A7S4NIF3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NIF3_9EUKA)

HSP 1 Score: 63.5 bits (153), Expect = 7.870e-10
Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 1
Query:  100 IDVHGNSLDGSIPESMGELLGYNLSYLDLSSNELTGSIPSFLDGAEAVFRYIDLSDNPFACPIP 291
            ID   N + G IP+ +G L  ++L+ LDLS+N L G++P F       F Y++LS+NPF CPIP
Sbjct:    4 IDFSFNEISGIIPDVIGNLADFSLNSLDLSNNTLGGTVPEFFVTDANDFTYVNLSNNPFICPIP 67          
BLAST of mRNA_M-pyrifera_M_contig109336.1946.1 vs. uniprot
Match: A0A836C7K7_9CHLO (Guanylate cyclase domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C7K7_9CHLO)

HSP 1 Score: 58.9 bits (141), Expect = 5.730e-8
Identity = 37/94 (39.36%), Postives = 51/94 (54.26%), Query Frame = 1
Query:   16 ELQTLELQENSLVGSIPQTTFLLRAIIEIDVH--GNSLDGSIPE-SMGELLGYNLSYLDLSSNELTGSIPSFLDGAEAVFRYIDLSDNPFACPI 288
            +LQ L+L  N L G++P   FL    +  DVH   N L+G  PE   G  L  +LSY++LSSN L GS+P +L        ++D S N  A P+
Sbjct:  238 KLQVLDLDSNLLTGALPPEAFLAGGGVLRDVHLGNNGLEGPFPELPAGSQLSASLSYVELSSNALNGSLPRYL--GLIPLTHLDASGNRLAGPV 329          
BLAST of mRNA_M-pyrifera_M_contig109336.1946.1 vs. uniprot
Match: UPI0010169010 (receptor-like protein 56 isoform X1 n=2 Tax=Vigna unguiculata TaxID=3917 RepID=UPI0010169010)

HSP 1 Score: 56.6 bits (135), Expect = 3.650e-7
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 1
Query:   25 TLELQENSLVGSIPQTTFLLRAIIEIDVHGNSLDGSIPESMGELLGYNLSYLDLSSNELTGSIPSFLDGAEAVFRYIDLSDN 270
            +L++  N LVG+IP+       + E+ +  N   G IP  + + L  NLSYLDLS N LTG +PSFL+ +    ++I LS+N
Sbjct:  903 SLDISNNHLVGNIPRILTNFSKLSELRMSNNHFQGFIPLELPQQLR-NLSYLDLSQNNLTGLVPSFLNSS---VKFIHLSNN 980          
BLAST of mRNA_M-pyrifera_M_contig109336.1946.1 vs. uniprot
Match: A0A5N6NYR6_9ASTR (LRRNT_2 domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NYR6_9ASTR)

HSP 1 Score: 55.1 bits (131), Expect = 1.240e-6
Identity = 30/97 (30.93%), Postives = 49/97 (50.52%), Query Frame = 1
Query:    1 ISNLFELQTLELQENSLVGSIPQTTFLLRAIIEIDVHGNSLDGSIPESMGELLGYNLSYLDLSSNELTGSIPSFLDGAEAVFRYIDLSDNPFACPIP 291
            +SNL  ++ ++L    L  S P+    L+ +  ID+  + +  +IPE    +    L+YL+LSSN +TG +   L   +     +DL  N F  PIP
Sbjct:  419 MSNLSYVEEIDLCSCKLGPSFPKWIQRLKNLSHIDISNSGISDTIPEDFWNMWPSQLTYLNLSSNNITGKVTDLLSNFDVESSTLDLGSNKFYGPIP 515          
BLAST of mRNA_M-pyrifera_M_contig109336.1946.1 vs. uniprot
Match: D8S5S5_SELML (LRRNT_2 domain-containing protein (Fragment) n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S5S5_SELML)

HSP 1 Score: 54.7 bits (130), Expect = 1.690e-6
Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = 1
Query:    1 ISNLFELQTLELQENSLVGSIPQTTFLLRAIIEIDVHGNSLDGSIPESMGELLGYNLSYLDLSSNELTGSIPSFL 225
            ++ L EL T+ L    L G IP     LR +   +VHGNS+DGSIP + G+LL   L  LDL SN  +G++P+ L
Sbjct:  425 LATLPELSTISLSRCKLQGPIPSCLSHLRTL---NVHGNSMDGSIPSTFGKLL--RLEVLDLGSNFFSGALPASL 494          
BLAST of mRNA_M-pyrifera_M_contig109336.1946.1 vs. uniprot
Match: A0A835A232_9POAL (LRRNT_2 domain-containing protein n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835A232_9POAL)

HSP 1 Score: 54.3 bits (129), Expect = 2.280e-6
Identity = 36/95 (37.89%), Postives = 51/95 (53.68%), Query Frame = 1
Query:   16 ELQTLELQENSLVGSIPQ---TTFLLRAIIEIDVHGNSLDGSIPESMGELLGYNLSYLDLSSNELTGSIPSFLDGAEAVFRYIDLSDNPFACPIP 291
            E+  L+L  N+L+  IP     TF L    +ID+  N L G++P    +L G +   L+LSSN LTG+IP F          +D+S N FA P+P
Sbjct:  463 EITELDLSSNALIDKIPDWFWQTFSLAT--DIDISNNQLSGTLP---ADLSGMSCLMLNLSSNNLTGTIPQF----PRNITTLDISRNSFAGPLP 548          
BLAST of mRNA_M-pyrifera_M_contig109336.1946.1 vs. uniprot
Match: A0A2U1Q6C4_ARTAN (Receptor like protein 1 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1Q6C4_ARTAN)

HSP 1 Score: 53.1 bits (126), Expect = 6.030e-6
Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    1 ISNLFELQTLELQENSLVGSIPQTTFLLRAIIEIDVHGNSLDGSIPESMGELLGYNLSYLDLSSNELTGSIPS 219
            + N   L+ L L+ NS  GSI    +    ++E+++  N + G+IP+ +G+LL   +SYL+LS N L+GSIPS
Sbjct:  592 VENNTMLEVLYLRNNSFGGSIRMPLYRNFQLLELEISSNHIMGAIPQDIGKLLA-GISYLNLSHNALSGSIPS 663          
BLAST of mRNA_M-pyrifera_M_contig109336.1946.1 vs. uniprot
Match: A0A6P6VRH3_COFAR (probable LRR receptor-like serine/threonine-protein kinase At1g53420 n=1 Tax=Coffea arabica TaxID=13443 RepID=A0A6P6VRH3_COFAR)

HSP 1 Score: 52.8 bits (125), Expect = 8.170e-6
Identity = 29/92 (31.52%), Postives = 49/92 (53.26%), Query Frame = 1
Query:    1 ISNLFELQTLELQENSLVGSIPQTTFLLRAIIEIDVHGNSLDGSIPESMGELLGYNLSYLDLSSNELTGSIPSFLDGAEAVFRYIDLSDNPF 276
            I N+  L  L L+  SL G IP   +    ++ +D+  N+L G IP  + +   + L ++ L SN L+G++P +L        Y+D+S+N F
Sbjct:  337 IYNMVSLSFLTLRNCSLTGPIPDYIWWFTNLLYLDLSFNNLMGIIPPDLSQ---FQLQFIFLRSNNLSGTVPGWLTSLSYSGSYVDVSENSF 425          
BLAST of mRNA_M-pyrifera_M_contig109336.1946.1 vs. uniprot
Match: A0A6A3A8D8_HIBSY (Putative Pentatricopeptide n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3A8D8_HIBSY)

HSP 1 Score: 52.4 bits (124), Expect = 1.000e-5
Identity = 33/100 (33.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:    1 ISNLFELQTLELQENSLVGSIPQTTFLLRAIIEI---DVHGNSLDGSIPESMGELLGYNLSYLDLSSNELTGSIPSFLDGAEAVFRYIDLSDNPFACPIP 291
            + N+ +L+TL +   +L      T F   + I +    +  NSL GSIP+SM  + G  L ++DLS+N+L G++P FL G     + ++L DN     +P
Sbjct:  180 LGNMQKLKTLTISHANLTAQREDTNFPHASRISLKNLSLASNSLSGSIPDSMSAVTG--LVHVDLSNNQLNGTVPKFLSG----LKVLNLEDNGLRGVLP 273          
BLAST of mRNA_M-pyrifera_M_contig109336.1946.1 vs. uniprot
Match: A0A7J7PP56_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PP56_9CHLO)

HSP 1 Score: 52.4 bits (124), Expect = 1.110e-5
Identity = 28/69 (40.58%), Postives = 41/69 (59.42%), Query Frame = 1
Query:  100 IDVHGNSLDGSIPESMGELLGYNLSYLDLSSNELTGSIPSFLDG-----AEAVFRYIDLSDNPFACPIP 291
            +D+ GN   G +P S+G L G  LSYLDLSSN LTGS+  + D      +++   +++LS N  A  +P
Sbjct:  555 LDLSGNGFSGPVPASLGGLQG--LSYLDLSSNALTGSLAPYADALAANASQSALLHLNLSSNRLAGEVP 621          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109336.1946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4NIF3_9EUKA7.870e-1045.31Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
A0A836C7K7_9CHLO5.730e-839.36Guanylate cyclase domain-containing protein n=1 Ta... [more]
UPI00101690103.650e-740.24receptor-like protein 56 isoform X1 n=2 Tax=Vigna ... [more]
A0A5N6NYR6_9ASTR1.240e-630.93LRRNT_2 domain-containing protein n=2 Tax=Mikania ... [more]
D8S5S5_SELML1.690e-644.00LRRNT_2 domain-containing protein (Fragment) n=1 T... [more]
A0A835A232_9POAL2.280e-637.89LRRNT_2 domain-containing protein n=1 Tax=Digitari... [more]
A0A2U1Q6C4_ARTAN6.030e-639.73Receptor like protein 1 n=1 Tax=Artemisia annua Ta... [more]
A0A6P6VRH3_COFAR8.170e-631.52probable LRR receptor-like serine/threonine-protei... [more]
A0A6A3A8D8_HIBSY1.000e-533.00Putative Pentatricopeptide n=1 Tax=Hibiscus syriac... [more]
A0A7J7PP56_9CHLO1.110e-540.58Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109336contigM-pyrifera_M_contig109336:304..600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size297
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.2795653-CDS-M-pyrifera_M_contig109336:303..6001622815603.2795653-CDS-M-pyrifera_M_contig109336:303..600Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109336 304..600 -
1692277483.127179-CDS-M-pyrifera_M_contig109336:303..6001692277483.127179-CDS-M-pyrifera_M_contig109336:303..600Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109336 304..600 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109336.1946.1prot_M-pyrifera_M_contig109336.1946.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109336 304..600 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109336.1946.1

>prot_M-pyrifera_M_contig109336.1946.1 ID=prot_M-pyrifera_M_contig109336.1946.1|Name=mRNA_M-pyrifera_M_contig109336.1946.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
ISNLFELQTLELQENSLVGSIPQTTFLLRAIIEIDVHGNSLDGSIPESMG
ELLGYNLSYLDLSSNELTGSIPSFLDGAEAVFRYIDLSDNPFACPIPW*
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mRNA from alignment at M-pyrifera_M_contig109336:304..600-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109336.1946.1 ID=mRNA_M-pyrifera_M_contig109336.1946.1|Name=mRNA_M-pyrifera_M_contig109336.1946.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig109336:304..600- (Macrocystis pyrifera P11B4 male)
ATCTCCAACCTGTTCGAGCTGCAGACGCTGGAGCTACAAGAGAACTCTCT GGTGGGATCGATTCCTCAGACGACGTTCCTTCTTCGCGCAATCATTGAGA TCGATGTTCATGGCAACTCTTTGGATGGCTCTATTCCTGAGAGCATGGGC GAGCTGCTGGGGTACAACCTGAGCTATTTGGACCTCTCGAGCAACGAGCT GACGGGCTCCATTCCCTCTTTCTTGGACGGAGCAGAGGCAGTCTTCCGCT ACATTGACCTCAGTGACAACCCCTTTGCTTGCCCGATTCCTTGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109336:304..600-

>mRNA_M-pyrifera_M_contig109336.1946.1 ID=mRNA_M-pyrifera_M_contig109336.1946.1|Name=mRNA_M-pyrifera_M_contig109336.1946.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig109336:304..600- (Macrocystis pyrifera P11B4 male)
ATCTCCAACCTGTTCGAGCTGCAGACGCTGGAGCTACAAGAGAACTCTCT
GGTGGGATCGATTCCTCAGACGACGTTCCTTCTTCGCGCAATCATTGAGA
TCGATGTTCATGGCAACTCTTTGGATGGCTCTATTCCTGAGAGCATGGGC
GAGCTGCTGGGGTACAACCTGAGCTATTTGGACCTCTCGAGCAACGAGCT
GACGGGCTCCATTCCCTCTTTCTTGGACGGAGCAGAGGCAGTCTTCCGCT
ACATTGACCTCAGTGACAACCCCTTTGCTTGCCCGATTCCTTGGTGAATC
TCCAACCTGTTCGAGCTGCAGACGCTGGAGCTACAAGAGAACTCTCTGGT
GGGATCGATTCCTCAGACGACGTTCCTTCTTCGCGCAATCATTGAGATCG
ATGTTCATGGCAACTCTTTGGATGGCTCTATTCCTGAGAGCATGGGCGAG
CTGCTGGGGTACAACCTGAGCTATTTGGACCTCTCGAGCAACGAGCTGAC
GGGCTCCATTCCCTCTTTCTTGGACGGAGCAGAGGCAGTCTTCCGCTACA
TTGACCTCAGTGACAACCCCTTTGCTTGCCCGATTCCTTGGTGA
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