mRNA_M-pyrifera_M_contig83308.19455.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83308.19455.1
Unique NamemRNA_M-pyrifera_M_contig83308.19455.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83308.19455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83308contigM-pyrifera_M_contig83308:230..763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size534
Cds size507
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816739.9336338-CDS-M-pyrifera_M_contig83308:229..7361622816739.9336338-CDS-M-pyrifera_M_contig83308:229..736Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83308 230..736 -
1692278150.079807-CDS-M-pyrifera_M_contig83308:229..7361692278150.079807-CDS-M-pyrifera_M_contig83308:229..736Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83308 230..736 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816739.9447072-UTR-M-pyrifera_M_contig83308:736..7631622816739.9447072-UTR-M-pyrifera_M_contig83308:736..763Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83308 737..763 -
1692278150.099632-UTR-M-pyrifera_M_contig83308:736..7631692278150.099632-UTR-M-pyrifera_M_contig83308:736..763Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83308 737..763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83308.19455.1prot_M-pyrifera_M_contig83308.19455.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83308 230..736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83308.19455.1

>prot_M-pyrifera_M_contig83308.19455.1 ID=prot_M-pyrifera_M_contig83308.19455.1|Name=mRNA_M-pyrifera_M_contig83308.19455.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=169bp
MFVLSASSLYNFAFYMLNQATLDFCPDCSKPNCRLHTASVSGTITNGWGD
APGAEAGEIDFLETPFWEPRLYNSTGYTRYYTTIGNSKGFCNPKYNTKYP
PEAMGGDATTSYFTIPPNTPVLIAVVIDAAGVTLYRNPTWPGLTATTASP
ILQSLRPSTPPSPVDPCDD
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mRNA from alignment at M-pyrifera_M_contig83308:230..763-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83308.19455.1 ID=mRNA_M-pyrifera_M_contig83308.19455.1|Name=mRNA_M-pyrifera_M_contig83308.19455.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig83308:230..763- (Macrocystis pyrifera P11B4 male)
GTGGAGGGTTTGAAGCCTCCTGGGTTCATGTTTGTGCTGAGTGCATCATC
TTTGTACAACTTTGCATTCTACATGCTCAATCAGGCAACTCTGGACTTTT
GTCCGGATTGTTCAAAACCAAATTGTCGACTCCACACAGCTTCTGTGAGT
GGGACAATAACGAATGGTTGGGGTGATGCACCTGGTGCGGAAGCTGGTGA
GATCGATTTCTTGGAAACCCCGTTTTGGGAGCCGAGATTGTACAATTCTA
CGGGATATACAAGGTACTACACGACGATAGGAAACTCAAAAGGATTTTGC
AACCCAAAATACAACACCAAATACCCCCCAGAAGCAATGGGTGGAGATGC
AACAACGTCATACTTCACCATACCCCCCAATACTCCAGTCCTTATCGCAG
TTGTGATCGATGCTGCCGGTGTCACGCTGTATCGAAACCCAACTTGGCCA
GGACTCACAGCAACCACAGCGTCTCCAATCCTCCAATCACTCCGTCCTTC
CACACCCCCTTCACCTGTTGATCCATGCGATGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83308:230..763-

>mRNA_M-pyrifera_M_contig83308.19455.1 ID=mRNA_M-pyrifera_M_contig83308.19455.1|Name=mRNA_M-pyrifera_M_contig83308.19455.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1014bp|location=Sequence derived from alignment at M-pyrifera_M_contig83308:230..763- (Macrocystis pyrifera P11B4 male)
ATGTTTGTGCTGAGTGCATCATCTTTGTACAACTTTGCATTCTACATGCT
CAATCAGGCAACTCTGGACTTTTGTCCGGATTGTTCAAAACCAAATTGTC
GACTCCACACAGCTTCTGTGAGTGGGACAATAACGAATGGTTGGGGTGAT
GCACCTGGTGCGGAAGCTGGTGAGATCGATTTCTTGGAAACCCCGTTTTG
GGAGCCGAGATTGTACAATTCTACGGGATATACAAGGTACTACACGACGA
TAGGAAACTCAAAAGGATTTTGCAACCCAAAATACAACACCAAATACCCC
CCAGAAGCAATGGGTGGAGATGCAACAACGTCATACTTCACCATACCCCC
CAATACTCCAGTCCTTATCGCAGTTGTGATCGATGCTGCCGGTGTCACGC
TGTATCGAAACCCAACTTGGCCAGGACTCACAGCAACCACAGCGTCTCCA
ATCCTCCAATCACTCCGTCCTTCCACACCCCCTTCACCTGTTGATCCATG
CGATGACATGTTTGTGCTGAGTGCATCATCTTTGTACAACTTTGCATTCT
ACATGCTCAATCAGGCAACTCTGGACTTTTGTCCGGATTGTTCAAAACCA
AATTGTCGACTCCACACAGCTTCTGTGAGTGGGACAATAACGAATGGTTG
GGGTGATGCACCTGGTGCGGAAGCTGGTGAGATCGATTTCTTGGAAACCC
CGTTTTGGGAGCCGAGATTGTACAATTCTACGGGATATACAAGGTACTAC
ACGACGATAGGAAACTCAAAAGGATTTTGCAACCCAAAATACAACACCAA
ATACCCCCCAGAAGCAATGGGTGGAGATGCAACAACGTCATACTTCACCA
TACCCCCCAATACTCCAGTCCTTATCGCAGTTGTGATCGATGCTGCCGGT
GTCACGCTGTATCGAAACCCAACTTGGCCAGGACTCACAGCAACCACAGC
GTCTCCAATCCTCCAATCACTCCGTCCTTCCACACCCCCTTCACCTGTTG
ATCCATGCGATGAC
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