mRNA_M-pyrifera_M_contig83284.19450.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83284.19450.1
Unique NamemRNA_M-pyrifera_M_contig83284.19450.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig83284.19450.1 vs. uniprot
Match: A0A7Y3CTZ6_9ACTN (VWFA domain-containing protein (Fragment) n=2 Tax=Acidimicrobiia TaxID=84992 RepID=A0A7Y3CTZ6_9ACTN)

HSP 1 Score: 258 bits (658), Expect = 2.130e-78
Identity = 143/274 (52.19%), Postives = 193/274 (70.44%), Query Frame = 1
Query:    7 SDRMFVRYEGSTDTSRIINTSIDVGSASVSYSHAGGVKLTKPVSFPAREIIEPSGFAFFRSDIGLYVALGLAFAAIGLAIFALGSLFAGGETSLEGLISRYSGDSIGDELDDDESAIVQTALVRRAVEMSESFAEERGFLLKVEEMLERAKVPLRPGEAMGLWAIITLVVGAVGMLLAGGLFGGLIFGVIGAFTQLFALRFKSRRRMRQFEQQLPDALQLLAGTLRAGYSLPQGLEAVSHEISDPMGFELRRVMTEARLGRELEDALASAADRL 828
            SDR+ V Y+G TD +   + ++ +G ASVS S+ GG    +P++       EP    F R+ +GL      A   +  A++ALG++FA GE++LEG++ RYSG+     LD++E+AIVQTALV+RAVE+SESFAE+RGFL+++EE+LE+ ++PLR GEAMGL+A+ T+    VG +  GG+                  +F++RRR+RQFEQQLPD LQLLAGTLRAGYSLPQGLEAVSHEI++PMG+EL R MTEARLGR++EDAL   ADRL
Sbjct:  268 SDRLLVSYDGETDRTLRGDLTLTIGQASVSISYPGGRFTNQPLALTPIIDPEPGALGFVRTQMGLLATAVFAGLGVLAAVWALGNIFASGESTLEGMLRRYSGEE-DQPLDEEETAIVQTALVKRAVELSESFAEDRGFLVRIEEILEQGRIPLRAGEAMGLFALGTMAGFIVGFVFTGGIXXXXXXXXXXXXXXXXXXQFRARRRVRQFEQQLPDMLQLLAGTLRAGYSLPQGLEAVSHEIAEPMGYELTRAMTEARLGRDIEDALGGVADRL 540          
BLAST of mRNA_M-pyrifera_M_contig83284.19450.1 vs. uniprot
Match: A0A7Y2DP24_9ACTN (T2SSF domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DP24_9ACTN)

HSP 1 Score: 246 bits (629), Expect = 9.620e-74
Identity = 138/275 (50.18%), Postives = 191/275 (69.45%), Query Frame = 1
Query:   10 DRMFVRYEGSTDTSRIINTSIDVGSASVSYSHAGGVKLTKPVSFPAREIIEPSGFAFFRSDIGLYVALGLAFAAIGL--AIFALGSLFAGGETSLEGLISRYSGDSIGDELDDDESAIVQTALVRRAVEMSESFAEERGFLLKVEEMLERAKVPLRPGEAMGLWAIITLVVGAVGMLLAGGLFGGLIFGVIGAFTQLFALRFKSRRRMRQFEQQLPDALQLLAGTLRAGYSLPQGLEAVSHEISDPMGFELRRVMTEARLGRELEDALASAADRL 828
            DR+ V Y+G  D +   +            S+ GG    KP++        PS   F RS  GL  A  + F A+G+  A+++LG++FAGGE++LEG++ RYSG+  G+ELD++E+A+VQTALV++AVE++ESFAE+RGFL +VE++LE+ ++PLR GEAMG++ +IT+   A+G +  G    GLI   + A      ++ K+RRR++ FE QLPD LQLLAGTLRAGYSLPQGLEAVSHEI++PMG+EL R MTEARLGRE+E+AL   A RL
Sbjct:  267 DRLIVSYQGQVDLTERGDLXXXXXXXXXXXSYRGGRLTDKPLALEPIIDPPPSPLDFLRSSTGL--AATIVFTALGMLAAVWSLGNIFAGGESTLEGMLRRYSGEDDGEELDEEETALVQTALVKKAVELTESFAEDRGFLARVEDVLEQGRIPLRAGEAMGIFGMITMAGFALGFVFTGSFIRGLIVAGVAALGTTTGVQVKARRRIKAFEAQLPDMLQLLAGTLRAGYSLPQGLEAVSHEIAEPMGYELSRAMTEARLGREIEEALEGVATRL 539          
BLAST of mRNA_M-pyrifera_M_contig83284.19450.1 vs. uniprot
Match: A0A5Q2RF77_9ACTN (VWA domain-containing protein n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RF77_9ACTN)

HSP 1 Score: 179 bits (455), Expect = 1.560e-48
Identity = 108/258 (41.86%), Postives = 160/258 (62.02%), Query Frame = 1
Query:   58 INTSIDVGSASVSYSHAGGVKLTKPVSFPAREIIEPSGFAFFRSDIGLYVALGLAFAAIGLAIFALGSLFAGGETSLEGLISRYSGDSIGDELDDD-ESAIVQTALVRRAVEMSESFAEERGFLLKVEEMLERAKVPLRPGEAMGLWAIITLVVGAVGMLLAGGLFGGLIFGVIGAFTQLFALRFKSRRRMRQFEQQLPDALQLLAGTLRAGYSLPQGLEAVSHEISDPMGFELRRVMTEARLGRELEDALASAADRL 828
            ++  +DV  AS S S   G       +       EP G  F R D GL + +GL   A+ LAI+A+ SL      SL+ ++ +Y+  +     DD+ +S++ +TA ++RAV ++E FAE +G L K+E MLERA +PLR  EA+  +A    ++  + ++L   L G ++  +IG       + F + RR + FE QLPD LQLL+GTLRAGYSL QG+EAVS E+S+PMG ELRRV+TE+RLGR LE++L ++A+R+
Sbjct:  274 VDLELDVADASTSVSFVSGGVAEGAANLRPVTASEPGGVGFLR-DNGLLIGIGLVLLAVALAIYAVVSLLTPDAGSLDAVLEQYTEPAAPSPYDDEGDSSLAKTAFIQRAVSLTEGFAERQGLLAKIEAMLERANLPLRAAEALFFYAAGVGLLLLLALVLTRNLLGAVVVVLIGILIPPAVVNFLASRRQKAFESQLPDTLQLLSGTLRAGYSLMQGVEAVSREVSEPMGQELRRVVTESRLGRPLEESLEASAERM 530          
BLAST of mRNA_M-pyrifera_M_contig83284.19450.1 vs. uniprot
Match: A0A8F4FVH2_9ACTN (VWA domain-containing protein n=1 Tax=Aquihabitans sp. G128 TaxID=2849779 RepID=A0A8F4FVH2_9ACTN)

HSP 1 Score: 176 bits (447), Expect = 2.320e-47
Identity = 116/270 (42.96%), Postives = 163/270 (60.37%), Query Frame = 1
Query:   19 FVRYEGSTDTSRIINTSIDVGSASVSYSHAGGVKLTKPVSFPAREIIEPSGFAFFRSDIGLYVALGLAFAAIGLAIFALGSLFAGGETSLEGLISRYSGDSIGDELDDDESAIVQTALVRRAVEMSESFAEERGFLLKVEEMLERAKVPLRPGEAMGLWAIITLVVGAVGMLLAGGLFGGLIFGVIGAFTQLFALRFKSRRRMRQFEQQLPDALQLLAGTLRAGYSLPQGLEAVSHEISDPMGFELRRVMTEARLGRELEDALASAADRL 828
            +V    ST T   +N S+ VGS     S   G  +    +  +    +  G  + RS  G  +AL L   A GL  F++ +L    +T L  ++  Y    +  + D  +SA+ QTAL++RAVE++E FA+ +G L KVE +LERA +PLR  EA+  +A   LVVG +G++  G + GGL+  +I A     AL F + RR + F  QLPD L LL+G+LRAGYSL QG+EAVS E+ +PMG ELRRV+TEARLGRE+EDA+ S A+R+
Sbjct:  269 YVATYASTATQGAVNVSVAVGSVEQQASFVVGSSVQGAATGQSVTADKAFGPEWLRSSGGALLALVLIGLAAGLGAFSIAALATKNDTGLSAMLRPYEEGGVSPD-DAGDSALAQTALLQRAVEITEDFAQRQGMLEKVENLLERADLPLRAAEALFFYAAGVLVVGLLGLVSFGPI-GGLVLLIIAALIPPAALSFIAGRRGKAFVGQLPDTLGLLSGSLRAGYSLMQGVEAVSQEVEEPMGKELRRVITEARLGREIEDAMDSVAERM 536          
BLAST of mRNA_M-pyrifera_M_contig83284.19450.1 vs. uniprot
Match: UPI001F171EC0 (type II secretion system F family protein n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001F171EC0)

HSP 1 Score: 171 bits (432), Expect = 9.160e-46
Identity = 111/270 (41.11%), Postives = 161/270 (59.63%), Query Frame = 1
Query:   25 RYEGSTDTSRIINTSIDVGSASVSYSH-AGGVKLTKPVSFPAREIIEPSG-FAFFRSDIGLYVALGLAFAAIGLAIFALGSLFAGGETSLEGLISRYSGDSIGDELDDDESAIVQTALVRRAVEMSESFAEERGFLLKVEEMLERAKVPLRPGEAMGLWAIITLVVGAVGMLLAGGLFGGLIFGVIGAFTQLFALRFKSRRRMRQFEQQLPDALQLLAGTLRAGYSLPQGLEAVSHEISDPMGFELRRVMTEARLGRELEDALASAADRL 828
            RY        +   +++VG  S +    +G + + KP   PA  + E SG  AF +  +GL V + LA  A+G        +    +  L  ++  Y+ + +G++ D +  ++V+T LV+RAVE++E  A ERG L   E  LERA +PLR GEA+  +  + +VV  +G+   G L GGLI G + A   + A+R  +  R ++F  QLPD LQLL+GTL+AGYSL QG+EAVS E+ DPMG ELRRV+TEARLGR LE+AL   A+R+
Sbjct:  178 RYRSEVPVGGVAELTLEVGGKSTAVDTVSGALTVGKPALQPA--VTESSGGIAFLQGGVGLAVGIVLALVAVGGXXXXXXXVVVK-DDGLSAVLRPYA-EPMGED-DAESDSLVRTPLVQRAVEITEQVAAERGLLATTENALERANLPLRAGEALFFYVALVVVVTVLGLAWFGSLVGGLILGALAAIIPVAAVRIMAGLRKKKFMSQLPDTLQLLSGTLKAGYSLMQGVEAVSQEVEDPMGTELRRVVTEARLGRPLEEALEGTAERM 442          
BLAST of mRNA_M-pyrifera_M_contig83284.19450.1 vs. uniprot
Match: A0A6I3C580_9ACTN (VWA domain-containing protein n=3 Tax=root TaxID=1 RepID=A0A6I3C580_9ACTN)

HSP 1 Score: 171 bits (432), Expect = 3.290e-45
Identity = 101/226 (44.69%), Postives = 144/226 (63.72%), Query Frame = 1
Query:  160 EPSGFAFFRSDIGLYVALGLAFAAIGLAIFALGSLFAGGETSLEGLISRYSGDSIGDELDDDE---SAIVQTALVRRAVEMSESFAEERGFLLKVEEMLERAKVPLRPGEAMGLWAIITLVVGAVGMLLAGGLFGGLIFGVIGAFTQLFALRFKSRRRMRQFEQQLPDALQLLAGTLRAGYSLPQGLEAVSHEISDPMGFELRRVMTEARLGRELEDALASAADRL 828
            + SG AFF+   G+ +A+ L   A  L  FALGSLF   E  L+ L+  Y+      E+D D    + + ++AL +RAV++  + AE +G L K E++LE+A +PLR  EA+  +  + L    VG+L    L GGL+ GVIGA      L F ++RR ++F  QLPD L LLAGTLRAGYS  QG+EA S E+ +PMG ELRR++TEA+LGR LE+A+ ++A+R+
Sbjct:  322 DTSGLAFFQGGQGIAIAMILGAGAAALGAFALGSLFVKQEDRLQSLLQPYA------EVDPDAIKGNTLAKSALFQRAVKIMSNIAERQGVLDKAEKLLEQANLPLRAAEALMFYVGVVLASTVVGLLFQRSLLGGLVLGVIGALAPPAVLNFLAKRRRKRFMMQLPDTLTLLAGTLRAGYSFMQGVEATSREVEEPMGAELRRIITEAQLGRPLEEAMDASAERM 541          
BLAST of mRNA_M-pyrifera_M_contig83284.19450.1 vs. uniprot
Match: UPI001C62524A (type II secretion system F family protein n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C62524A)

HSP 1 Score: 170 bits (430), Expect = 5.660e-45
Identity = 105/219 (47.95%), Postives = 148/219 (67.58%), Query Frame = 1
Query:  175 AFFRSDIGLYVALGLAFAAIGLAIFALGSLFAGGETSLEGLISRYSGDSIGDELDDDESAIVQTALVRRAVEMSESFAEERGFLLKVEEMLERAKVPLRPGEAMGLWAIITLVVGAVGMLLAGGLFGGLIFGVIGAFTQLFA-LRFKSRRRMRQFEQQLPDALQLLAGTLRAGYSLPQGLEAVSHEISDPMGFELRRVMTEARLGRELEDALASAADRL 828
            +F R   GL V  G+   A+ LA+ A+ ++ +  + SL+ ++ +Y+     D +DDD  ++ QTA V+RAVE++E  A ++G L+KVE+ LERA +PLR  EA+  +    LVV  +G++L G +  GL+FG +  F    A L F   RR +QF  QLPD LQLL+G+LRAGYSL QG++AVS E+  PMG ELRRVMTEARLGRELEDAL ++A+R+
Sbjct:  317 SFVRGTAGLIVVAGVGGLAVVLAVVAIATIASKEDHSLDRMLQQYTEPGHADLVDDD--SLAQTAFVQRAVELTEEIAAKQGLLVKVEKKLERADLPLRAAEAIFFYVAGALVVTVLGLVLMGLM--GLLFGALLGFGLPMAILNFLGGRRQKQFNTQLPDMLQLLSGSLRAGYSLVQGVDAVSAEVDGPMGRELRRVMTEARLGRELEDALEASAERV 531          
BLAST of mRNA_M-pyrifera_M_contig83284.19450.1 vs. uniprot
Match: A0A538JHA5_9ACTN (VWA domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538JHA5_9ACTN)

HSP 1 Score: 168 bits (425), Expect = 2.620e-44
Identity = 112/261 (42.91%), Postives = 154/261 (59.00%), Query Frame = 1
Query:   58 INTSIDVGSASVSYSHAGGVKLTKPVSFPAR-EIIEPSGFAFFRSDIGLYVALGLAFAAIGLAIFALGSLFAGGETSLEGLISRYSGDSIGDELDDD---ESAIVQTALVRRAVEMSESFAEERGFLLKVEEMLERAKVPLRPGEAMGLWAIITLVVGAVGMLLAGGLFGGLIFGVIGAFTQLFALRFKSRRRMRQFEQQLPDALQLLAGTLRAGYSLPQGLEAVSHEISDPMGFELRRVMTEARLGRELEDALASAADRL 828
            I+  +D G  SV     G   +T+   F AR +++E    A F+  I  ++   L  AA GL  +AL  +     ++LE  +  Y+ +  G  +++D   +  + +TA V+RAVEM+  FAEERG L  VE  LE+A +PLR  EA+  W    +V+  +G+     +FG L+   I A T    L   S RR R+F  QLPD LQLL+G+LRAGYSL QG+EAVS E+SDPMG ELRRV+ EARLGR LED+LA  A R+
Sbjct:  266 IDLEVDAGGLSVKAPSVGIGTVTE--GFSARPDVVESKTPALFKGAIAKWMVALLVLAAAGLLAYALILIVVRDMSTLENALQPYAAE--GPSMEEDGPSDVRMAETAFVKRAVEMTGRFAEERGLLQWVERQLEQADLPLRAAEAIFFWLSAIVVLTLLGLFSTRSIFGALVLLFIAAVTPAVVLSGLSSRRQRKFTSQLPDTLQLLSGSLRAGYSLLQGVEAVSQEVSDPMGQELRRVLAEARLGRPLEDSLADTAQRM 522          
BLAST of mRNA_M-pyrifera_M_contig83284.19450.1 vs. uniprot
Match: A0A7V9B6J2_9ACTN (Type II secretion system F family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9B6J2_9ACTN)

HSP 1 Score: 168 bits (425), Expect = 2.890e-44
Identity = 107/267 (40.07%), Postives = 159/267 (59.55%), Query Frame = 1
Query:   37 STDTSR-IINTSIDVGSASVSYSHAGGVKLTKPVSFPAREIIEPSGFAFFRSDIGLYVALGLAFAAIGLAIFALGS--LFAGGETSLEGLISRYSGDSIGDELDDDESAIVQTALVRRAVEMSESFAEERGFLLKVEEMLERAKVPLRPGEAMGLWAIITLVVGAVGMLLAGGLFGGLIFGVIGAFTQLFALRFKSRRRMRQFEQQLPDALQLLAGTLRAGYSLPQGLEAVSHEISDPMGFELRRVMTEARLGRELEDALASAADRL 828
            S+D +R I + S+  G  S + S+  G  L  P     R  ++  G  F ++D+  Y+A+  A A +  A+FA G   LF   +  L   +  YS + +    D+    + Q+AL++RAV M+ESFA +RG L++VE+ LE+A +PLR GEAM  +    L+V  + + L   L    + G+         L F + R+ ++F+  LPD LQLL+ TLRAGYS+ QG+EAVS E+S+PMG ELRRV+TEARLGR LE++L + ADR+
Sbjct:  267 SSDATRGIQDISVSAGEVSTAGSYVAGGSLEGPQRLAPRPTVDAGGIRFLQNDVAKYLAI--AAATLAAAMFAYGVILLFVRQDGDLTAALRPYSEEFVASGEDEGIQPMAQSALLQRAVAMTESFARQRGVLVRVEKALEKAGLPLRAGEAMFFYLATALLVIVLLLALTQNLMATAVLGLFAVLIPPAILNFFAERKKKKFQALLPDTLQLLSSTLRAGYSMMQGVEAVSQEVSEPMGAELRRVVTEARLGRPLEESLEAIADRM 531          
BLAST of mRNA_M-pyrifera_M_contig83284.19450.1 vs. uniprot
Match: UPI001E5D65C4 (type II secretion system F family protein n=1 Tax=Rhabdothermincola sp. EGI L10124 TaxID=2903142 RepID=UPI001E5D65C4)

HSP 1 Score: 167 bits (423), Expect = 7.680e-44
Identity = 111/273 (40.66%), Postives = 165/273 (60.44%), Query Frame = 1
Query:   28 YEGSTDTSRIINTSIDVGSASVSYSHAGGVKLTKPVSFPAREIIEPSG-FAFFRSDIGLYVALGLAFAAIGLAIFALGSLFAGGETSLEGLISRYSG----DSIGDELDDD-ESAIVQTALVRRAVEMSESFAEERGFLLKVEEMLERAKVPLRPGEAMGLWAIITLVVGAVGMLLAGGLFGGLIFGVIGAFTQLFALRFKSRRRMRQFEQQLPDALQLLAGTLRAGYSLPQGLEAVSHEISDPMGFELRRVMTEARLGRELEDALASAADRL 828
            Y+   D   +++ +++VG  S + S   G  +   V+    EIIE SG  +  + ++GL   + +   A GL  FA+ SLF   E  L  ++  Y       ++GD  DDD ++++ +TA+V+RAV+++E  A +RG L+KVE  LERA +PLR GE +  +A   +++  +  ++ G L  GLI G+  A      + F + RR +QF   LPD L LL+GTLRAGYSL QG+EAVS E+++PMG ELRRV+TEARLGR LE+AL   A R+
Sbjct:  294 YDAGVDPGTVVDLTLEVGGQSATASVVTGSSVQGEVALNP-EIIESSGGVSALQGNLGLIALVLVGLLAAGLFAFAIFSLFVR-EDRLAQVLQPYDDAMTTSALGDGADDDADTSLARTAIVQRAVQITEQVATDRGLLVKVENALERANLPLRAGEGLFFYAAGVVLLTILAFVVGGSLILGLIVGLFAAIVPPAVVNFLAARRRKQFMALLPDTLSLLSGTLRAGYSLMQGVEAVSQEVAEPMGTELRRVVTEARLGRPLEEALDYTAVRM 564          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83284.19450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y3CTZ6_9ACTN2.130e-7852.19VWFA domain-containing protein (Fragment) n=2 Tax=... [more]
A0A7Y2DP24_9ACTN9.620e-7450.18T2SSF domain-containing protein n=1 Tax=Acidimicro... [more]
A0A5Q2RF77_9ACTN1.560e-4841.86VWA domain-containing protein n=1 Tax=Actinomarini... [more]
A0A8F4FVH2_9ACTN2.320e-4742.96VWA domain-containing protein n=1 Tax=Aquihabitans... [more]
UPI001F171EC09.160e-4641.11type II secretion system F family protein n=1 Tax=... [more]
A0A6I3C580_9ACTN3.290e-4544.69VWA domain-containing protein n=3 Tax=root TaxID=1... [more]
UPI001C62524A5.660e-4547.95type II secretion system F family protein n=1 Tax=... [more]
A0A538JHA5_9ACTN2.620e-4442.91VWA domain-containing protein n=1 Tax=Actinomyceti... [more]
A0A7V9B6J2_9ACTN2.890e-4440.07Type II secretion system F family protein n=1 Tax=... [more]
UPI001E5D65C47.680e-4440.66type II secretion system F family protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83284contigM-pyrifera_M_contig83284:68..895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score102.8
Seed ortholog evalue2.5e-19
Seed eggNOG ortholog1380370.JIBA01000003_gene2733
KEGG koko:K12510
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Type II secretion system (T2SS), protein F
EggNOG OGs2H577@201174,4FFVW@85021,COG2304@1,COG2304@2,COG4965@1,COG4965@2
COG Functional cat.U
Best tax levelIntrasporangiaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02044
Exons1
Model size828
Cds size813
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816739.7283037-UTR-M-pyrifera_M_contig83284:67..821622816739.7283037-UTR-M-pyrifera_M_contig83284:67..82Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83284 68..82 +
1692278149.984844-UTR-M-pyrifera_M_contig83284:67..821692278149.984844-UTR-M-pyrifera_M_contig83284:67..82Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83284 68..82 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816739.7391608-CDS-M-pyrifera_M_contig83284:82..8951622816739.7391608-CDS-M-pyrifera_M_contig83284:82..895Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83284 83..895 +
1692278149.9950428-CDS-M-pyrifera_M_contig83284:82..8951692278149.9950428-CDS-M-pyrifera_M_contig83284:82..895Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83284 83..895 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83284.19450.1prot_M-pyrifera_M_contig83284.19450.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83284 83..895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83284.19450.1

>prot_M-pyrifera_M_contig83284.19450.1 ID=prot_M-pyrifera_M_contig83284.19450.1|Name=mRNA_M-pyrifera_M_contig83284.19450.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=271bp
MFVRYEGSTDTSRIINTSIDVGSASVSYSHAGGVKLTKPVSFPAREIIEP
SGFAFFRSDIGLYVALGLAFAAIGLAIFALGSLFAGGETSLEGLISRYSG
DSIGDELDDDESAIVQTALVRRAVEMSESFAEERGFLLKVEEMLERAKVP
LRPGEAMGLWAIITLVVGAVGMLLAGGLFGGLIFGVIGAFTQLFALRFKS
RRRMRQFEQQLPDALQLLAGTLRAGYSLPQGLEAVSHEISDPMGFELRRV
MTEARLGRELEDALASAADRL
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mRNA from alignment at M-pyrifera_M_contig83284:68..895+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83284.19450.1 ID=mRNA_M-pyrifera_M_contig83284.19450.1|Name=mRNA_M-pyrifera_M_contig83284.19450.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig83284:68..895+ (Macrocystis pyrifera P11B4 male)
GCCGCCAGCGACCGAATGTTCGTCCGCTACGAGGGGTCCACCGACACCTC ACGGATCATCAACACCAGCATCGACGTCGGGTCTGCCTCGGTCTCGTACT CACACGCCGGTGGTGTGAAGCTCACCAAGCCGGTGAGCTTCCCCGCTCGA GAGATTATCGAGCCTTCAGGCTTCGCCTTCTTCCGCAGCGACATCGGACT CTATGTGGCTCTCGGGCTGGCATTCGCAGCGATCGGCCTGGCGATCTTCG CCCTCGGCTCGTTGTTCGCCGGCGGAGAGACCTCACTCGAAGGCCTGATC TCTCGCTACTCGGGCGACTCCATCGGTGACGAACTCGATGACGACGAGAG TGCCATCGTCCAGACGGCGCTCGTTCGTCGAGCGGTCGAGATGTCGGAAA GCTTCGCCGAGGAGCGGGGCTTCTTGCTCAAGGTCGAAGAAATGCTCGAG CGAGCCAAGGTGCCGCTCCGTCCGGGTGAAGCGATGGGCCTGTGGGCCAT CATCACCCTGGTGGTCGGTGCCGTCGGCATGCTTCTCGCCGGCGGACTCT TCGGAGGTCTGATCTTCGGTGTGATCGGTGCCTTCACCCAGTTGTTCGCT CTTCGCTTCAAGTCACGTCGCCGCATGCGCCAGTTCGAGCAGCAGCTGCC GGATGCACTCCAGCTTCTGGCCGGCACGCTCCGAGCCGGTTATTCCCTGC CCCAGGGCCTCGAGGCCGTGTCACACGAGATCTCCGATCCCATGGGCTTC GAGCTCCGCAGGGTGATGACCGAGGCCCGCCTCGGTCGTGAACTCGAAGA TGCACTGGCTTCGGCAGCCGACCGGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83284:68..895+

>mRNA_M-pyrifera_M_contig83284.19450.1 ID=mRNA_M-pyrifera_M_contig83284.19450.1|Name=mRNA_M-pyrifera_M_contig83284.19450.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1626bp|location=Sequence derived from alignment at M-pyrifera_M_contig83284:68..895+ (Macrocystis pyrifera P11B4 male)
ATGTTCGTCCGCTACGAGGGGTCCACCGACACCTCACGGATCATCAACAC
CAGCATCGACGTCGGGTCTGCCTCGGTCTCGTACTCACACGCCGGTGGTG
TGAAGCTCACCAAGCCGGTGAGCTTCCCCGCTCGAGAGATTATCGAGCCT
TCAGGCTTCGCCTTCTTCCGCAGCGACATCGGACTCTATGTGGCTCTCGG
GCTGGCATTCGCAGCGATCGGCCTGGCGATCTTCGCCCTCGGCTCGTTGT
TCGCCGGCGGAGAGACCTCACTCGAAGGCCTGATCTCTCGCTACTCGGGC
GACTCCATCGGTGACGAACTCGATGACGACGAGAGTGCCATCGTCCAGAC
GGCGCTCGTTCGTCGAGCGGTCGAGATGTCGGAAAGCTTCGCCGAGGAGC
GGGGCTTCTTGCTCAAGGTCGAAGAAATGCTCGAGCGAGCCAAGGTGCCG
CTCCGTCCGGGTGAAGCGATGGGCCTGTGGGCCATCATCACCCTGGTGGT
CGGTGCCGTCGGCATGCTTCTCGCCGGCGGACTCTTCGGAGGTCTGATCT
TCGGTGTGATCGGTGCCTTCACCCAGTTGTTCGCTCTTCGCTTCAAGTCA
CGTCGCCGCATGCGCCAGTTCGAGCAGCAGCTGCCGGATGCACTCCAGCT
TCTGGCCGGCACGCTCCGAGCCGGTTATTCCCTGCCCCAGGGCCTCGAGG
CCGTGTCACACGAGATCTCCGATCCCATGGGCTTCGAGCTCCGCAGGGTG
ATGACCGAGGCCCGCCTCGGTCGTGAACTCGAAGATGCACTGGCTTCGGC
AGCCGACCGGCTCATGTTCGTCCGCTACGAGGGGTCCACCGACACCTCAC
GGATCATCAACACCAGCATCGACGTCGGGTCTGCCTCGGTCTCGTACTCA
CACGCCGGTGGTGTGAAGCTCACCAAGCCGGTGAGCTTCCCCGCTCGAGA
GATTATCGAGCCTTCAGGCTTCGCCTTCTTCCGCAGCGACATCGGACTCT
ATGTGGCTCTCGGGCTGGCATTCGCAGCGATCGGCCTGGCGATCTTCGCC
CTCGGCTCGTTGTTCGCCGGCGGAGAGACCTCACTCGAAGGCCTGATCTC
TCGCTACTCGGGCGACTCCATCGGTGACGAACTCGATGACGACGAGAGTG
CCATCGTCCAGACGGCGCTCGTTCGTCGAGCGGTCGAGATGTCGGAAAGC
TTCGCCGAGGAGCGGGGCTTCTTGCTCAAGGTCGAAGAAATGCTCGAGCG
AGCCAAGGTGCCGCTCCGTCCGGGTGAAGCGATGGGCCTGTGGGCCATCA
TCACCCTGGTGGTCGGTGCCGTCGGCATGCTTCTCGCCGGCGGACTCTTC
GGAGGTCTGATCTTCGGTGTGATCGGTGCCTTCACCCAGTTGTTCGCTCT
TCGCTTCAAGTCACGTCGCCGCATGCGCCAGTTCGAGCAGCAGCTGCCGG
ATGCACTCCAGCTTCTGGCCGGCACGCTCCGAGCCGGTTATTCCCTGCCC
CAGGGCCTCGAGGCCGTGTCACACGAGATCTCCGATCCCATGGGCTTCGA
GCTCCGCAGGGTGATGACCGAGGCCCGCCTCGGTCGTGAACTCGAAGATG
CACTGGCTTCGGCAGCCGACCGGCTC
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