mRNA_M-pyrifera_M_contig83230.19437.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83230.19437.1
Unique NamemRNA_M-pyrifera_M_contig83230.19437.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83230.19437.1 vs. uniprot
Match: Q55FT7_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q55FT7_DICDI)

HSP 1 Score: 140 bits (353), Expect = 8.790e-36
Identity = 79/193 (40.93%), Postives = 125/193 (64.77%), Query Frame = 1 
Query:   13 LVVATQVVQVAGDAVGQRASRKVFRGRAWRMLLALSAVSAVQVAILLGALQILLPARVTGALYTHGQRQVCYKEVDLDGQLPEYCESANCTAVSCPSQGPFSIPRSILLHPLLLLNGFSSVIYYTCEVLIYMHSMALLLLLVASFASTLVIAPIEAALGIRDSAVSP-LLFLLGLLGAALCVVEI-PSARRVE 585
            +++ATQ+V V GD+ GQR SR  ++     M++ L  ++AVQ+ I++G LQ+ LP  +TGA+Y +  +  CYKE+D++G++ + C   NCT + C SQGPFSI RSI LHP LL NG  ++IYY  EV +Y   + LL L++++ +ST +I P+    G   +   P L++L G+ G+ L V+E  P  +++E
Sbjct:   11 ILIATQLVSVIGDSFGQRCSRVNYKHSTRHMMIGLCLMTAVQMFIIMGILQLSLPTSITGAIYINNAKVDCYKELDIEGKIMD-CTPLNCTIIPCKSQGPFSIFRSISLHPFLLTNGLMNIIYYNGEVFLYKEPLGLLFLVISALSSTFLINPLNIIFGEPINQPIPFLIYLFGIGGSILSVIEFTPKKKKIE 202
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BLAST of mRNA_M-pyrifera_M_contig83230.19437.1 vs. uniprot
Match: A0A151ZJJ9_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZJJ9_9MYCE)

HSP 1 Score: 135 bits (340), Expect = 3.620e-34
Identity = 73/179 (40.78%), Postives = 115/179 (64.25%), Query Frame = 1 
Query:   28 QVVQVAGDAVGQRASRKVFRGRAWRMLLALSAVSAVQVAILLGALQILLPARVTGALYTHGQRQVCYKEVDLDGQLPEYCESANCTAVSCPSQGPFSIPRSILLHPLLLLNGFSSVIYYTCEVLIYMHSMALLLLLVASFASTLVIAPIEAALGIR-DSAVSPLLFLLGLLGAALCVVE 561
            Q V V GD+ GQR SR  ++     M++ L  ++AVQ+ +++G LQ+ LP  +TGA+Y   ++  CYKE+D++G++ E C  +NCT + C SQGPFS+ +SILLHP LL NG  ++IYY  EV +Y   + LL L++A+ +ST +I P+    G   +  +  L++  G+ G+ L V+E
Sbjct:   14 QGVSVVGDSFGQRCSRVNYKHSTRHMMIGLCLMTAVQMFVIIGILQLALPTSITGAIYIDNKKVECYKELDIEGKI-ENCTPSNCTVIPCESQGPFSMFKSILLHPFLLTNGLMNIIYYNGEVFLYKEPLGLLFLVIAALSSTFLINPLNMIFGEPINQPIPALIYFFGITGSLLSVIE 191
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BLAST of mRNA_M-pyrifera_M_contig83230.19437.1 vs. uniprot
Match: D3B9B4_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B9B4_POLPP)

HSP 1 Score: 129 bits (323), Expect = 7.380e-32
Identity = 69/186 (37.10%), Postives = 120/186 (64.52%), Query Frame = 1 
Query:    7 LWLVVATQVVQVAGDAVGQRASRKVFRGRAWRMLLALSAVSAVQVAILLGALQILLPARVTGALYTHGQRQVCYKEVDLDGQLPEYCESANCTAVSCPSQGPFSIPRSILLHPLLLLNGFSSVIYYTCEVLIYMHSMALLLLLVASFASTLVIAPIEAALGIR-DSAVSPLLFLLGLLGAALCVVE 561
            +++++A Q++ V GD+ GQR SR  F+     M++ L  ++A+Q+ ++   LQ+ LP  ++GA+Y +  +  C+ ++D++G++ E C   NCT + C SQGPFS+ RS+ LHP L  NG  ++IYY  EVL+Y   + LL L++A+ +ST +I P+    G   +  + PL+++ G+LG+ L V+E
Sbjct:    7 IYIMLAAQLLSVVGDSFGQRVSRVNFKHSPRHMMIGLCLMTAIQMFVIFSILQLSLPTSISGAIYINSTKVDCFYQLDVEGKI-EDCTVQNCTEIPCKSQGPFSMFRSMKLHPFLFANGAFNIIYYNGEVLLYKEPLGLLFLVIAALSSTFLINPLNKIFGEPINQPIPPLIYIFGILGSLLSVIE 191
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BLAST of mRNA_M-pyrifera_M_contig83230.19437.1 vs. uniprot
Match: F0ZLN4_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZLN4_DICPU)

HSP 1 Score: 129 bits (324), Expect = 8.780e-32
Identity = 70/185 (37.84%), Postives = 115/185 (62.16%), Query Frame = 1 
Query:   13 LVVATQVVQVAGDAVGQRASRKVFRGRAWRMLLALSAVSAVQVAILLGALQILLPARVTGALYTHGQRQVCYKEVDLDGQLPEYCESANCTAVSCPSQGPFSIPRSILLHPLLLLNGFSSVIYYTCEVLIYMHSMALLLLLVASFASTLVIAPIEAALGIR-DSAVSPLLFLLGLLGAALCVVEI 564
            +++ATQ + + GDA GQR SR  ++ +   M++ L  ++AVQ+   +G  Q+ LP  +T A+Y    +  CY E+D+ G++ + C  ANCT + C SQGPFSI RSI LHP LL NG  ++IYY  EV +Y     L+ L++++ +ST +I P+    G   +  +  L+++LG+ G+ + V+E+
Sbjct:   10 ILIATQFISMLGDAFGQRCSRVNYKRKTRHMMIGLCLMTAVQMFFFMGIFQLSLPTSITSAIYIDNVKVDCYYELDVQGKIMD-CTPANCTVIPCKSQGPFSIFRSIKLHPFLLTNGLMNIIYYNGEVFLYKEPFGLIFLVISALSSTFLIDPLNIIFGEPINQPIPALIYILGITGSVISVIEL 193
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BLAST of mRNA_M-pyrifera_M_contig83230.19437.1 vs. uniprot
Match: A0A7S1CQD2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQD2_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 5.570e-12
Identity = 42/109 (38.53%), Postives = 63/109 (57.80%), Query Frame = 1 
Query:   13 LVVATQVVQVAGDAVGQRASRKVFRGRAWRMLLALSAVSAVQVAILLGALQILLPARVTGALYTHGQRQVCYKEVDLDGQLPEYCESANCTAVSC---PSQGPFSIPRS 330
            L++ +Q +   G+ +GQR+ R V  G   R L ++S +SA+Q+ I+LGALQ+ LPA VTGA+Y   +R  C +E D  G  P      +C A      PS  P+ +PR+
Sbjct:   11 LILVSQAIASLGNVLGQRSVRVVHAGSRSRFLASISLLSALQIVIVLGALQLALPADVTGAVYKGMERTACTREWDEQGCCPSPGVGCSCVAACATILPSSTPWPLPRN 119
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83230.19437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Q55FT7_DICDI8.790e-3640.93Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
A0A151ZJJ9_9MYCE3.620e-3440.78Uncharacterized protein n=1 Tax=Tieghemostelium la... [more]
D3B9B4_POLPP7.380e-3237.10Uncharacterized protein n=1 Tax=Polysphondylium pa... [more]
F0ZLN4_DICPU8.780e-3237.84Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
A0A7S1CQD2_9STRA5.570e-1238.53Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83230contigM-pyrifera_M_contig83230:189..773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.7
Seed ortholog evalue3e-30
Seed eggNOG ortholog44689.DDB0216569
Hectar predicted targeting categorysignal peptide
EggNOG OGs295VI@1,2RCU4@2759,3XBEZ@554915
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons1
Model size585
Cds size585
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816739.1080825-CDS-M-pyrifera_M_contig83230:188..7731622816739.1080825-CDS-M-pyrifera_M_contig83230:188..773Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83230 189..773 +
1692278149.668781-CDS-M-pyrifera_M_contig83230:188..7731692278149.668781-CDS-M-pyrifera_M_contig83230:188..773Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83230 189..773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83230.19437.1prot_M-pyrifera_M_contig83230.19437.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83230 189..773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83230.19437.1

>prot_M-pyrifera_M_contig83230.19437.1 ID=prot_M-pyrifera_M_contig83230.19437.1|Name=mRNA_M-pyrifera_M_contig83230.19437.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=195bp
MALWLVVATQVVQVAGDAVGQRASRKVFRGRAWRMLLALSAVSAVQVAIL
LGALQILLPARVTGALYTHGQRQVCYKEVDLDGQLPEYCESANCTAVSCP
SQGPFSIPRSILLHPLLLLNGFSSVIYYTCEVLIYMHSMALLLLLVASFA
STLVIAPIEAALGIRDSAVSPLLFLLGLLGAALCVVEIPSARRVE
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mRNA from alignment at M-pyrifera_M_contig83230:189..773+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83230.19437.1 ID=mRNA_M-pyrifera_M_contig83230.19437.1|Name=mRNA_M-pyrifera_M_contig83230.19437.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=585bp|location=Sequence derived from alignment at M-pyrifera_M_contig83230:189..773+ (Macrocystis pyrifera P11B4 male)
ATGGCGCTTTGGCTTGTAGTGGCCACACAGGTGGTACAGGTGGCGGGGGA
TGCGGTTGGACAACGAGCAAGTCGAAAGGTGTTCCGTGGGCGGGCGTGGC
GCATGCTACTAGCTCTGTCTGCAGTGTCAGCGGTGCAAGTCGCGATTCTT
CTGGGTGCGCTGCAGATCCTGCTGCCTGCGCGAGTCACAGGGGCACTGTA
CACACACGGACAGCGACAGGTGTGCTATAAGGAGGTAGATTTGGACGGTC
AGCTGCCCGAGTACTGTGAATCGGCCAACTGCACGGCTGTATCCTGCCCT
TCGCAGGGCCCGTTCTCGATTCCGCGCTCCATTTTGCTTCATCCACTCCT
GCTCCTTAACGGCTTCTCCTCTGTCATCTACTACACTTGTGAAGTCCTTA
TCTATATGCACTCCATGGCTCTCCTTCTTCTGCTCGTCGCCTCCTTCGCC
TCCACGCTCGTCATCGCGCCCATCGAAGCGGCGCTTGGCATCCGGGACTC
TGCCGTCTCCCCCCTCCTCTTCCTCCTCGGCCTGCTCGGCGCAGCCCTTT
GTGTAGTAGAGATCCCCTCCGCCCGGCGCGTCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83230:189..773+

>mRNA_M-pyrifera_M_contig83230.19437.1 ID=mRNA_M-pyrifera_M_contig83230.19437.1|Name=mRNA_M-pyrifera_M_contig83230.19437.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1170bp|location=Sequence derived from alignment at M-pyrifera_M_contig83230:189..773+ (Macrocystis pyrifera P11B4 male)
ATGGCGCTTTGGCTTGTAGTGGCCACACAGGTGGTACAGGTGGCGGGGGA
TGCGGTTGGACAACGAGCAAGTCGAAAGGTGTTCCGTGGGCGGGCGTGGC
GCATGCTACTAGCTCTGTCTGCAGTGTCAGCGGTGCAAGTCGCGATTCTT
CTGGGTGCGCTGCAGATCCTGCTGCCTGCGCGAGTCACAGGGGCACTGTA
CACACACGGACAGCGACAGGTGTGCTATAAGGAGGTAGATTTGGACGGTC
AGCTGCCCGAGTACTGTGAATCGGCCAACTGCACGGCTGTATCCTGCCCT
TCGCAGGGCCCGTTCTCGATTCCGCGCTCCATTTTGCTTCATCCACTCCT
GCTCCTTAACGGCTTCTCCTCTGTCATCTACTACACTTGTGAAGTCCTTA
TCTATATGCACTCCATGGCTCTCCTTCTTCTGCTCGTCGCCTCCTTCGCC
TCCACGCTCGTCATCGCGCCCATCGAAGCGGCGCTTGGCATCCGGGACTC
TGCCGTCTCCCCCCTCCTCTTCCTCCTCGGCCTGCTCGGCGCAGCCCTTT
GTGTAGTAGAGATCCCCTCCGCCCGGCGCGTCGAGATGGCGCTTTGGCTT
GTAGTGGCCACACAGGTGGTACAGGTGGCGGGGGATGCGGTTGGACAACG
AGCAAGTCGAAAGGTGTTCCGTGGGCGGGCGTGGCGCATGCTACTAGCTC
TGTCTGCAGTGTCAGCGGTGCAAGTCGCGATTCTTCTGGGTGCGCTGCAG
ATCCTGCTGCCTGCGCGAGTCACAGGGGCACTGTACACACACGGACAGCG
ACAGGTGTGCTATAAGGAGGTAGATTTGGACGGTCAGCTGCCCGAGTACT
GTGAATCGGCCAACTGCACGGCTGTATCCTGCCCTTCGCAGGGCCCGTTC
TCGATTCCGCGCTCCATTTTGCTTCATCCACTCCTGCTCCTTAACGGCTT
CTCCTCTGTCATCTACTACACTTGTGAAGTCCTTATCTATATGCACTCCA
TGGCTCTCCTTCTTCTGCTCGTCGCCTCCTTCGCCTCCACGCTCGTCATC
GCGCCCATCGAAGCGGCGCTTGGCATCCGGGACTCTGCCGTCTCCCCCCT
CCTCTTCCTCCTCGGCCTGCTCGGCGCAGCCCTTTGTGTAGTAGAGATCC
CCTCCGCCCGGCGCGTCGAG
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