mRNA_M-pyrifera_M_contig83196.19434.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83196.19434.1
Unique NamemRNA_M-pyrifera_M_contig83196.19434.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig83196.19434.1 vs. uniprot
Match: A0A800IEK2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A800IEK2_9ACTN)

HSP 1 Score: 249 bits (637), Expect = 3.190e-78
Identity = 132/265 (49.81%), Postives = 164/265 (61.89%), Query Frame = 1
Query:   19 GPTATEEDLATDLRSVVVMNDWGLPASLVGRVAALGRPTFGWIEGVQDFDDVDTGRSRRPYRHVDHVFALGRYGEARLDGCSVTITGSSRLRDLWFADPGSWSTPHATVNSNFTYGVLTEHRRAWVASVASACRSAGMSWSLSRHTAERGTSAPHRSDRRPISELLSSSSHFVGRFSTVCYEALVRGLEVAYHNPHGEAEPTFSAPNGAFALTTNSEELGAVLSGQPRQRSEVRAAATDFLTHHLRLDPGPSPAELAADEIVSRL 813
            G   TE  L T   ++VV+NDWG  ASLV  +     PTF W+EGVQDF DVDTG+ R+ YR VDHVF LG+Y    L GCS T+ GS RL  LW  +P         VN NFTYGV  +HRR W+ SV  A R AG  +++S+H A++G  AP R  +     LLS S  FV RFST+ YEALVRG+ + YHNPHGE  PTF+   GAF+L+++ +EL   L   P  R EVR  A +FL HHL L+   SPAE AA +I + L
Sbjct:   89 GQLLTETQL-TQATALVVLNDWGTTASLVDFMKNQQVPTFAWVEGVQDFQDVDTGKQRQAYRSVDHVFCLGQYSYDALSGCSRTLIGSERLTKLWHQEPLPAQDEKLLVNLNFTYGVGEQHRRPWLKSVQKASRLAGWRYTISQHVADKGLVAPWRRSQEDAGALLSRSPRFVTRFSTLGYEALVRGVPMTYHNPHGEKVPTFADHRGAFSLSSSVDELAKALREPPPSREEVRKQAEEFLYHHLHLERAESPAERAAKQIAAVL 352          
BLAST of mRNA_M-pyrifera_M_contig83196.19434.1 vs. uniprot
Match: A0A2D6U5R6_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6U5R6_9ACTN)

HSP 1 Score: 248 bits (634), Expect = 6.110e-78
Identity = 137/262 (52.29%), Postives = 164/262 (62.60%), Query Frame = 1
Query:   13 PMGPTATEEDLATDLRSVVVMNDWGLPASLVGRVAALGRPTFGWIEGVQDFDDVDTGRSRRPYRHVDHVFALGRYGEARLDGCSVTITGSSRLRDLWFADPGSWSTPHATV--NSNFTYGVLTEHRRAWVASVASACRSAGMSWSLSRHTAERGTSAPHRSDRRPISELLSSSSHFVGRFSTVCYEALVRGLEVAYHNPHGEAEPTFSAPNGAFALTTNSEELGAVLSGQPRQRSEVRAAATDFLTHHLRLDPGPSPAELAA 792
            P  P + +E L   + +VVVMNDWG+P +LV R  A+  PTF W+EGVQD+DDVDTG  RR Y+ VDHVF LG      L     T  GS R+  LW A  G   TP  TV  NSNFTYGV T+ RR W+  V +AC +    W LSRH AERG  +   SDR  + ELL+ + H V RFSTV  +AL  G+E+AYHNPHGE EPTFS P GAF +T + EEL AVL   PR R +VRA A  FL HH+ LD   + AE AA
Sbjct:   77 PTEPVSIDELLNRTV-AVVVMNDWGVPRTLVERARAVSVPTFAWVEGVQDYDDVDTGLERRAYQRVDHVFTLGEASRQLLGADRATAIGSERISRLWQAPAG---TPSDTVLVNSNFTYGVRTDARRDWLDGVVAACETEQRPWVLSRHVAERGRVSYPVSDRS-VDELLTGAGHLVSRFSTVALDALASGVELAYHNPHGEQEPTFSEPMGAFTVTRSREELRAVLHEPPRARDDVRAGAEAFLGHHVLLDSSTTAAERAA 333          
BLAST of mRNA_M-pyrifera_M_contig83196.19434.1 vs. uniprot
Match: A0A800IBV2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A800IBV2_9ACTN)

HSP 1 Score: 246 bits (627), Expect = 5.450e-77
Identity = 129/267 (48.31%), Postives = 167/267 (62.55%), Query Frame = 1
Query:   13 PMGPTATEEDLATDLRSVVVMNDWGLPASLVGRVAALGRPTFGWIEGVQDFDDVDTGRSRRPYRHVDHVFALGRYGEARLDGCSVTITGSSRLRDLWFADPGSWSTPHATVNSNFTYGVLTEHRRAWVASVASACRSAGMSWSLSRHTAERGTSAPHRSDRRPISELLSSSSHFVGRFSTVCYEALVRGLEVAYHNPHGEAEPTFSAPNGAFALTTNSEELGAVLSGQPRQRSEVRAAATDFLTHHLRLDPGPSPAELAADEIVSRL 813
            P GP  +++ LA   R++VV+NDWG  ASLV ++     PTF W+EGVQDF D+DTG+ R+ YR VDHVF LG+Y    L G S T+ GS RLR LWF +P S  +    VN NFTYGV  +HR  W+ SV  + ++A   + +S+H A++   AP R      S LL+ +  FV RFST+ YEALVRG+ + YHNPHGE  PTF+ P GAFA+T + EEL   L      R++VR  A +FL HHL L    SPAE  AD I + L
Sbjct:   66 PSGPVLSQQQLAR-ARALVVLNDWGTTASLVKKMKTQSVPTFAWVEGVQDFADLDTGKQRKAYRSVDHVFCLGQYDYQALAGTSRTVVGSERLRALWFENPTSVQSDRLLVNLNFTYGVGEQHRGPWLKSVQKSMQAADWKYVISQHVADKSLVAPWRKSSDSSSVLLAGTPLFVTRFSTLGYEALVRGIPMIYHNPHGEQVPTFADPRGAFAITESVEELIRALKADLPTRTKVRQQAEEFLNHHLHLVNDGSPAEHVADRICAVL 331          
BLAST of mRNA_M-pyrifera_M_contig83196.19434.1 vs. uniprot
Match: A0A7W6H2K2_9RHOB (Glycosyltransferase involved in cell wall biosynthesis n=1 Tax=Sulfitobacter undariae TaxID=1563671 RepID=A0A7W6H2K2_9RHOB)

HSP 1 Score: 133 bits (335), Expect = 1.260e-31
Identity = 93/265 (35.09%), Postives = 133/265 (50.19%), Query Frame = 1
Query:   61 SVVVMNDWGLPASL--VGRVAALGRPTFGWIEGVQDFDDVDTGRSRRPYRHVDHVFALG----RYGEARLDGCSVTITGSSRLRDLWFADPGSWSTPHATVNSNFTYGVLTEHRRAWVASVASACRSAGMSWSLSRHTAERGTSAPHRSDRRPISELLSSSSHFVGRFSTVCYEALVRGLEVAYHNPHGEAEPTFSAPNGAFALTTNSEELGAVLS--------GQPRQRS-EVRAAATDFLTHHLRLDPGPSPAELAADEIVSR 810
            S VVMNDW +  +L  V R  ALGR TFG +EG+QDF D+DTGR R  Y++V ++ A G    RY  A++    V + G  R+  L   D    + P A +N NFTYGVL   R +++ +  SA R+AG    +SRH  + G  + +      +   + +SS F+ RFST   E++  G    Y+NP  EA   F  P  AF +  N  EL   L           P   S +VR ++ +FL  H  +    +  E  A+ I S+
Sbjct:  410 SSVVMNDWDVKCALPIVLRDNALGRSTFGIVEGIQDFWDMDTGRHRNAYQNVKYLIAAGEHDLRYFAAKVHD-EVMVGGVPRIAPLLTRDVKHPARPTALINVNFTYGVLEAERDSFIKAAVSASRAAGFDPVISRHPQDEGDLSGYNVTDMDMHSAIDNSSVFISRFSTAIIESVAMGKPAIYYNPDIEAVDKFLHPLDAFEVCKNESELVTCLKKVHTWIQESNPLDLSAKVRKSSAEFLKLHCGIGVDDANPEKIAEFIASK 673          
BLAST of mRNA_M-pyrifera_M_contig83196.19434.1 vs. uniprot
Match: A0P220_ROSAI (Exopolysaccharide biosynthesis n=3 Tax=Roseibium aggregatum TaxID=187304 RepID=A0P220_ROSAI)

HSP 1 Score: 132 bits (331), Expect = 4.550e-31
Identity = 80/243 (32.92%), Postives = 111/243 (45.68%), Query Frame = 1
Query:   64 VVVMNDWGLPA-SLVGRVAALGRPTFGWIEGVQDFDDVDTGRSRRPYRHVDHVFALGRYGEARLDGCS--VTITGSSRLRDLWFADPGSW-STPHATVNSNFTYGVLTEHRRAWVASVASACRSAGMSWSLSRHTAERGTSAPHRSDRRPISELLSSSSHFVGRFSTVCYEALVRGLEVAYHNPHGEAEPTFSAPNGAFALTTNSEELGAVLSGQPRQRSEVRAAATDFLTHHLRLDPGPSPA 780
            +V +NDW     ++ G   A G  T   +EG+QD+ D D  R R  YR  D V   G + +         + + G  R+ ++  A P    S P   +NSNF+YGVL EHR AW+     AC  AG+ W +SRH A+ GT    +           +S+  V RF++   E L  G +V Y NPH E    F  P GA+ +   ++EL  +L   P      R A   FL  H     G  PA
Sbjct:  434 IVALNDWDPSVRAIFGAAQAAGIKTAAIVEGIQDYWDADINRDRGAYRMADAVLLPGSFDKRYFSDSKQEIHVCGLPRIAEMRSAPPLPLPSIPRVLINSNFSYGVLVEHRDAWLTQAVEACEQAGLDWVISRHPADLGTLHQDKVTPETFDAATRNSTVVVQRFASGILEGLAHGRQVIYFNPHAEQVDKFKDPMGAYPIAETTQELARLLENAPGLAELHRHAWPGFLDTHCANREGVEPA 676          
BLAST of mRNA_M-pyrifera_M_contig83196.19434.1 vs. uniprot
Match: UPI0018DEF177 (hypothetical protein n=1 Tax=Psychrobacter aquimaris TaxID=292733 RepID=UPI0018DEF177)

HSP 1 Score: 121 bits (303), Expect = 2.320e-27
Identity = 79/246 (32.11%), Postives = 128/246 (52.03%), Query Frame = 1
Query:   40 DLATDLRSVVVMNDWGLPAS--LVGRVAALGRPTFGWIEGVQDFDDVDTGRSRRPYRHVDHVFALG----RYGEARLDGCSVTITGSSRLRDLWFADPGSWSTPHATVNSNFTYGVLTEHRRAWVASVASACRSAGMSWSLSRHTAERGTSAPHRSDRRPISELLSSSSHFVGRFSTVCYEALVRGLEVAYHNPHGEAEPTFSAPNGAFALTTNSEELGAVLSGQPRQRSEVRA---AATDFLTHH 750
            +L  +  +++V NDW    S  LV R  ALG+ T G IEG+ D++D+DTGR+R  YR V +V   G    R+  + L+  +  + G  RL  +     G  S     +N+NFTYGVL E+R +W+    +AC + G+ + +S H A++G  +          + L  S+  + RFS+   E+LV G+ V Y+N   E+   F  PNGA+    + +     L+ + R+ +E +    A ++FL  H
Sbjct:  497 ELEINSLALIVFNDWDSKVSNPLVKRFNALGKKTIGLIEGINDYNDIDTGRNRYAYRTVSYVLIPGDFDRRHYFSDLEDRAYVV-GIPRLSKIIPDKIGVKSNSRVLINANFTYGVLEEYRYSWIEDCVNACVNNGLDYIISLHNADQGDYSKFNVSESSFYDELKQSTLLISRFSSCIIESLVVGVPVIYYNNGFESVYKFQEPNGAYFYAKSYD----CLNREVRKIAETKVDSNAVSNFLNDH 737          
BLAST of mRNA_M-pyrifera_M_contig83196.19434.1 vs. uniprot
Match: A0A7W4GQU9_9RHOB (Glycosyltransferase family 2 protein n=2 Tax=unclassified Paracoccus (in: Bacteria) TaxID=2688777 RepID=A0A7W4GQU9_9RHOB)

HSP 1 Score: 118 bits (296), Expect = 2.060e-26
Identity = 88/258 (34.11%), Postives = 122/258 (47.29%), Query Frame = 1
Query:   58 RSVVVMNDWG-LPASLVGRVAALGRPTFGWIEGVQDFDDVDTGRSRRPYRHVDHVFALGRYGEARLD---GCSVTITGSSRLRDL--WFAD-PGSWSTPHA-----TVNSNFTYGVLTEHRRAWVASVASACRSAGMSWSLSRHTAERGTSAPHRSDRRPISELLSSSSHFVGRFSTVCYEALVRGLEVAYHNPHGEAEPTFSA-PNGAFALTTNSEELGAVLSGQPRQRSEVRAAATDFLTHHLR---LDPGPSPAE 783
            R VV  NDW  +   ++      G PT   +EG+QD+ DVDTGR+R  YR    V   G +         G S+ + G  R++ L    AD P +     A      +NSNF++ VLTE R AW+    +A R AG+   +SRH  ++GT  P    +    E L S    + RF++   E+L  G+ V Y NPHGE    FS+ P GA+ +    E L   L+     R    A A  FL HH     +D G + AE
Sbjct:  450 RLVVAFNDWDFVTRPILVAAEQAGIPTAAIVEGIQDYGDVDTGRTRHAYRTARTVLLPGDFDRRYFPAGGGQSLAVAGIPRIQLLRGQAADRPPAERARQAGSRRVLINSNFSHNVLTERRDAWLTQAVAAVRHAGLEPVISRHPEDKGTLFPELVTQASFYETLESCCASIQRFASGILESLAGGVPVIYFNPHGERVDKFSSDPMGAYPVAVTGEALAGHLTTLGDWREAALARADAFLDHHAGHRDIDSGAAIAE 707          
BLAST of mRNA_M-pyrifera_M_contig83196.19434.1 vs. uniprot
Match: A0A698FMX4_CAMJU (Glycosyltransferase (Fragment) n=2 Tax=Campylobacter TaxID=194 RepID=A0A698FMX4_CAMJU)

HSP 1 Score: 118 bits (295), Expect = 2.920e-26
Identity = 73/238 (30.67%), Postives = 114/238 (47.90%), Query Frame = 1
Query:   58 RSVVVMNDWGLPA-SLVGRVAALGRPTFGWIEGVQDFDDVDTGRSRRPYRHVDHVFALGRYGEARLDGCS--VTITGSSRLRDLWFADPGSWSTPH----ATVNSNFTYGVLTEHRRAWVASVASACRSAGMSWSLSRHTAERGTSAPHRSDRRPISELLSSSSHFVGRFSTVCYEALVRGLEVAYHNPHGEAEPTFSAPNGAFALTTNSEELGAVLSGQPRQRSEVRAAATDFLTHH 750
            +S+VV NDW +   S++      G  T G +EG+ D+ D DTGR R  Y+ V+++F  G + +   +     + I G  R+ ++++              A +NSNF+YGVL EHR  W+    SAC SAG    ++RH A+ GT   + +  +   E L      + RF++   EAL R     Y NPH E    F  P  A+ +  +  EL +VL    +   +      DF+ +H
Sbjct:  630 KSIVVFNDWEIVTKSIIMAAKKSGIKTIGIVEGINDYLDADTGRVRNAYQAVEYLFLPGEHDKKYFNSLEQKLFIGGIPRIYEMFYQKEKQLGVKKGKRIALINSNFSYGVLVEHRDKWLRKAVSACLSAGYKPVITRHPADLGTLYKNFTTSKTFYEELEECDVLISRFASGILEALARNKLPIYFNPHEEKVDKFKEPMNAYPIANSEIELRSVLRNLNQYYCKHSKYFKDFVEYH 867          
BLAST of mRNA_M-pyrifera_M_contig83196.19434.1 vs. uniprot
Match: A0A4R3XJY9_9HYPH (Glycosyl transferase family 2 n=3 Tax=Neorhizobium TaxID=1525371 RepID=A0A4R3XJY9_9HYPH)

HSP 1 Score: 117 bits (293), Expect = 3.560e-26
Identity = 84/239 (35.15%), Postives = 112/239 (46.86%), Query Frame = 1
Query:   64 VVVMNDWGL---PASLVGRVAALGRPTFGWIEGVQDFDDVDTGRSRRPYRHVDHVFALGRYGE---ARLDGCSVTITGSSRL---RDLWFADPGSWSTPHATVNSNFTYGVLTEHRRAWVASVASACRSAGMSWSLSRHTAERGTSAPHRSDRRPISELLSSSSHFVGRFSTVCYEALVRGLEVAYHNPHGEAEPTFSA-PNGAFALTTNSEELGAVLSGQPRQRSEVRAAATDFLTHH 750
            VV  NDW     P  L  R A LG  T G +EG+QD+DDVDT   R+ YR V++V   G +         G  V I+G  R+   R+     P         +NSNF+YGVLT+HR  W+AS   A R AG    +SRH A+ G   P         + L +    V RF++   EA+     V Y N H E    F+  P GA+ ++ + +EL A L      +  VRA    FL  H
Sbjct:  268 VVTFNDWDYISRPLVLAARAAGLG--TLGIVEGIQDYDDVDTRAERKAYRLVENVILPGAFDYRYFVNASGQRVFISGIPRIQAMRNQPETAPSLAMERRVLINSNFSYGVLTQHRDQWLASAVQAVRRAGYEPVISRHPADMGRLFPELVSTEDFYQTLQTCCASVQRFASGILEAIAYNKPVFYFNIHNEKVDKFTFDPMGAYPVSRSEDELVADLGELHEWQGRVRANGPAFLDLH 504          
BLAST of mRNA_M-pyrifera_M_contig83196.19434.1 vs. uniprot
Match: UPI0020272D4F (glycosyltransferase family 2 protein n=1 Tax=Campylobacter coli TaxID=195 RepID=UPI0020272D4F)

HSP 1 Score: 112 bits (279), Expect = 3.600e-24
Identity = 76/246 (30.89%), Postives = 112/246 (45.53%), Query Frame = 1
Query:   58 RSVVVMNDWGLPA-SLVGRVAALGRPTFGWIEGVQDFDDVDTGRSRRPYRHVDHVFALGRYGEARLDGCS--VTITGSSRLRDLWFADPGSWSTPH----ATVNSNFTYGVLTEHRRAWVASVASACRSAGMSWSLSRHTAERGTSAPHRSDRRPISELLSSSSHFVGRFSTVCYEALVRGLEVAYHNPHGEAEPTFSAPNGAFALTTNSEELGAVLSGQPRQRSEVRAAATDFLTHH---LRLDP 765
            +++VV NDW +   S+V      G  T G +EG+ D+ D+DTGR R  Y+ V+++F  G +           + I G  R+ +++               A +NSNF+YGVL EHR  W+     +C  AG    +SRH A+ G S       +   + L      V RF++   EAL RG    Y NPHGE    F  P  A+ +  +  EL  +L        E       F+ HH   L+L+P
Sbjct:  434 KAIVVFNDWEVVTKSIVLAAKKSGIKTIGIVEGINDYLDLDTGRIRNAYQTVEYLFLPGEHDRKYFSDPEQKLFIGGVPRIYEMFHQSKMQLDFKKKKKIALINSNFSYGVLVEHRDEWLKKAVESCLLAGYEPVISRHPADLGKSYQDLVTTKTFYQALEECDVLVSRFASGILEALARGKLPVYFNPHGEKVDKFKNPMNAYPIANSEFELQDILGNLNFYYDEHFEYFEGFIGHHCGNLKLNP 679          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83196.19434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A800IEK2_9ACTN3.190e-7849.81Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A2D6U5R6_9ACTN6.110e-7852.29Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A800IBV2_9ACTN5.450e-7748.31Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A7W6H2K2_9RHOB1.260e-3135.09Glycosyltransferase involved in cell wall biosynth... [more]
A0P220_ROSAI4.550e-3132.92Exopolysaccharide biosynthesis n=3 Tax=Roseibium a... [more]
UPI0018DEF1772.320e-2732.11hypothetical protein n=1 Tax=Psychrobacter aquimar... [more]
A0A7W4GQU9_9RHOB2.060e-2634.11Glycosyltransferase family 2 protein n=2 Tax=uncla... [more]
A0A698FMX4_CAMJU2.920e-2630.67Glycosyltransferase (Fragment) n=2 Tax=Campylobact... [more]
A0A4R3XJY9_9HYPH3.560e-2635.15Glycosyl transferase family 2 n=3 Tax=Neorhizobium... [more]
UPI0020272D4F3.600e-2430.89glycosyltransferase family 2 protein n=1 Tax=Campy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83196contigM-pyrifera_M_contig83196:24..842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score135.6
Seed ortholog evalue3.5e-29
Seed eggNOG ortholog1085623.GNIT_2380
Hectar predicted targeting categoryother localisation
EggNOG free text desc.methyltransferase activity
EggNOG OGsCOG0500@1,COG0500@2
COG Functional cat.Q
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size819
Cds size804
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816738.926311-UTR-M-pyrifera_M_contig83196:23..381622816738.926311-UTR-M-pyrifera_M_contig83196:23..38Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83196 24..38 +
1692278149.5545614-UTR-M-pyrifera_M_contig83196:23..381692278149.5545614-UTR-M-pyrifera_M_contig83196:23..38Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83196 24..38 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816738.9379473-CDS-M-pyrifera_M_contig83196:38..8421622816738.9379473-CDS-M-pyrifera_M_contig83196:38..842Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83196 39..842 +
1692278149.5672834-CDS-M-pyrifera_M_contig83196:38..8421692278149.5672834-CDS-M-pyrifera_M_contig83196:38..842Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83196 39..842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83196.19434.1prot_M-pyrifera_M_contig83196.19434.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83196 39..842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83196.19434.1

>prot_M-pyrifera_M_contig83196.19434.1 ID=prot_M-pyrifera_M_contig83196.19434.1|Name=mRNA_M-pyrifera_M_contig83196.19434.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=268bp
MGPTATEEDLATDLRSVVVMNDWGLPASLVGRVAALGRPTFGWIEGVQDF
DDVDTGRSRRPYRHVDHVFALGRYGEARLDGCSVTITGSSRLRDLWFADP
GSWSTPHATVNSNFTYGVLTEHRRAWVASVASACRSAGMSWSLSRHTAER
GTSAPHRSDRRPISELLSSSSHFVGRFSTVCYEALVRGLEVAYHNPHGEA
EPTFSAPNGAFALTTNSEELGAVLSGQPRQRSEVRAAATDFLTHHLRLDP
GPSPAELAADEIVSRLR*
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mRNA from alignment at M-pyrifera_M_contig83196:24..842+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83196.19434.1 ID=mRNA_M-pyrifera_M_contig83196.19434.1|Name=mRNA_M-pyrifera_M_contig83196.19434.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=819bp|location=Sequence derived from alignment at M-pyrifera_M_contig83196:24..842+ (Macrocystis pyrifera P11B4 male)
GCTTCTGACGCCCCCATGGGACCCACCGCAACCGAGGAGGACCTCGCCAC CGACCTCCGCTCGGTGGTGGTGATGAACGACTGGGGGCTCCCCGCTTCAC TCGTCGGTCGCGTGGCCGCGTTGGGTCGTCCCACGTTCGGATGGATCGAG GGCGTGCAGGACTTCGATGATGTCGACACTGGTCGGTCACGGCGTCCGTA TCGCCATGTCGACCATGTCTTCGCCCTCGGCCGCTACGGCGAGGCCCGAC TGGACGGATGCTCGGTGACGATCACCGGAAGCAGCCGGCTGCGCGATCTC TGGTTCGCCGACCCGGGTTCGTGGAGCACTCCACATGCCACCGTCAACTC GAACTTCACCTATGGCGTCCTGACCGAGCATCGCCGCGCCTGGGTTGCGT CGGTGGCCTCAGCGTGCCGGTCGGCAGGGATGTCATGGTCGCTCTCACGC CACACCGCAGAGCGGGGAACGAGTGCGCCCCATCGTTCTGATCGCCGCCC CATCTCGGAGCTGCTCTCGAGCTCGTCGCACTTCGTCGGGCGGTTCAGCA CGGTGTGCTACGAGGCGCTGGTCCGCGGCCTGGAGGTGGCGTACCACAAC CCCCACGGCGAGGCGGAGCCGACCTTCTCCGCTCCGAACGGGGCCTTCGC GCTCACCACGAACTCCGAAGAGCTGGGTGCTGTGCTGTCCGGTCAACCCC GGCAACGCAGCGAGGTTCGCGCCGCGGCGACCGACTTCTTGACCCACCAC CTGCGGCTCGATCCAGGTCCGTCCCCCGCTGAGCTCGCGGCCGACGAGAT CGTCTCTCGCCTGCGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83196:24..842+

>mRNA_M-pyrifera_M_contig83196.19434.1 ID=mRNA_M-pyrifera_M_contig83196.19434.1|Name=mRNA_M-pyrifera_M_contig83196.19434.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1608bp|location=Sequence derived from alignment at M-pyrifera_M_contig83196:24..842+ (Macrocystis pyrifera P11B4 male)
ATGGGACCCACCGCAACCGAGGAGGACCTCGCCACCGACCTCCGCTCGGT
GGTGGTGATGAACGACTGGGGGCTCCCCGCTTCACTCGTCGGTCGCGTGG
CCGCGTTGGGTCGTCCCACGTTCGGATGGATCGAGGGCGTGCAGGACTTC
GATGATGTCGACACTGGTCGGTCACGGCGTCCGTATCGCCATGTCGACCA
TGTCTTCGCCCTCGGCCGCTACGGCGAGGCCCGACTGGACGGATGCTCGG
TGACGATCACCGGAAGCAGCCGGCTGCGCGATCTCTGGTTCGCCGACCCG
GGTTCGTGGAGCACTCCACATGCCACCGTCAACTCGAACTTCACCTATGG
CGTCCTGACCGAGCATCGCCGCGCCTGGGTTGCGTCGGTGGCCTCAGCGT
GCCGGTCGGCAGGGATGTCATGGTCGCTCTCACGCCACACCGCAGAGCGG
GGAACGAGTGCGCCCCATCGTTCTGATCGCCGCCCCATCTCGGAGCTGCT
CTCGAGCTCGTCGCACTTCGTCGGGCGGTTCAGCACGGTGTGCTACGAGG
CGCTGGTCCGCGGCCTGGAGGTGGCGTACCACAACCCCCACGGCGAGGCG
GAGCCGACCTTCTCCGCTCCGAACGGGGCCTTCGCGCTCACCACGAACTC
CGAAGAGCTGGGTGCTGTGCTGTCCGGTCAACCCCGGCAACGCAGCGAGG
TTCGCGCCGCGGCGACCGACTTCTTGACCCACCACCTGCGGCTCGATCCA
GGTCCGTCCCCCGCTGAGCTCGCGGCCGACGAGATCGTCTCTCGCCTGCG
CTGAATGGGACCCACCGCAACCGAGGAGGACCTCGCCACCGACCTCCGCT
CGGTGGTGGTGATGAACGACTGGGGGCTCCCCGCTTCACTCGTCGGTCGC
GTGGCCGCGTTGGGTCGTCCCACGTTCGGATGGATCGAGGGCGTGCAGGA
CTTCGATGATGTCGACACTGGTCGGTCACGGCGTCCGTATCGCCATGTCG
ACCATGTCTTCGCCCTCGGCCGCTACGGCGAGGCCCGACTGGACGGATGC
TCGGTGACGATCACCGGAAGCAGCCGGCTGCGCGATCTCTGGTTCGCCGA
CCCGGGTTCGTGGAGCACTCCACATGCCACCGTCAACTCGAACTTCACCT
ATGGCGTCCTGACCGAGCATCGCCGCGCCTGGGTTGCGTCGGTGGCCTCA
GCGTGCCGGTCGGCAGGGATGTCATGGTCGCTCTCACGCCACACCGCAGA
GCGGGGAACGAGTGCGCCCCATCGTTCTGATCGCCGCCCCATCTCGGAGC
TGCTCTCGAGCTCGTCGCACTTCGTCGGGCGGTTCAGCACGGTGTGCTAC
GAGGCGCTGGTCCGCGGCCTGGAGGTGGCGTACCACAACCCCCACGGCGA
GGCGGAGCCGACCTTCTCCGCTCCGAACGGGGCCTTCGCGCTCACCACGA
ACTCCGAAGAGCTGGGTGCTGTGCTGTCCGGTCAACCCCGGCAACGCAGC
GAGGTTCGCGCCGCGGCGACCGACTTCTTGACCCACCACCTGCGGCTCGA
TCCAGGTCCGTCCCCCGCTGAGCTCGCGGCCGACGAGATCGTCTCTCGCC
TGCGCTGA
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