mRNA_M-pyrifera_M_contig83173.19427.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83173.19427.1
Unique NamemRNA_M-pyrifera_M_contig83173.19427.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83173.19427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83173contigM-pyrifera_M_contig83173:332..733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size402
Cds size399
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816738.6133082-CDS-M-pyrifera_M_contig83173:331..7301622816738.6133082-CDS-M-pyrifera_M_contig83173:331..730Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83173 332..730 -
1692278149.386402-CDS-M-pyrifera_M_contig83173:331..7301692278149.386402-CDS-M-pyrifera_M_contig83173:331..730Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83173 332..730 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816738.6235805-UTR-M-pyrifera_M_contig83173:730..7331622816738.6235805-UTR-M-pyrifera_M_contig83173:730..733Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83173 731..733 -
1692278149.39756-UTR-M-pyrifera_M_contig83173:730..7331692278149.39756-UTR-M-pyrifera_M_contig83173:730..733Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83173 731..733 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83173.19427.1prot_M-pyrifera_M_contig83173.19427.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83173 332..730 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83173.19427.1

>prot_M-pyrifera_M_contig83173.19427.1 ID=prot_M-pyrifera_M_contig83173.19427.1|Name=mRNA_M-pyrifera_M_contig83173.19427.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
MTVDGEGNMVIEGEDGTMTMETGEELPDDFPDIPLPGEMNIETTSRVDNG
DGTGLHIVSAVMDTDAKSTFEAYGRALEDAGFTIDLNNVSNSDGEFYGMV
LATRDETLQVTTVLVTEDGGTRVQLSAATLDG*
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mRNA from alignment at M-pyrifera_M_contig83173:332..733-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83173.19427.1 ID=mRNA_M-pyrifera_M_contig83173.19427.1|Name=mRNA_M-pyrifera_M_contig83173.19427.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig83173:332..733- (Macrocystis pyrifera P11B4 male)
TCGATGACCGTCGACGGCGAAGGCAACATGGTCATCGAGGGCGAAGACGG
CACCATGACCATGGAGACCGGCGAGGAGCTCCCCGACGACTTCCCCGACA
TCCCACTGCCCGGCGAGATGAATATCGAAACGACCTCGAGAGTCGACAAC
GGCGACGGCACGGGGCTCCACATCGTCTCGGCGGTCATGGACACCGACGC
CAAGAGCACGTTCGAGGCCTACGGCCGCGCACTCGAGGATGCCGGATTCA
CCATCGACCTGAACAACGTGAGCAACAGCGACGGCGAGTTCTACGGCATG
GTCTTGGCCACTCGAGACGAGACCCTTCAGGTCACGACGGTCCTCGTCAC
CGAGGACGGCGGCACCCGTGTTCAGCTGTCGGCCGCCACCCTCGACGGCT
GA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83173:332..733-

>mRNA_M-pyrifera_M_contig83173.19427.1 ID=mRNA_M-pyrifera_M_contig83173.19427.1|Name=mRNA_M-pyrifera_M_contig83173.19427.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig83173:332..733- (Macrocystis pyrifera P11B4 male)
ATGACCGTCGACGGCGAAGGCAACATGGTCATCGAGGGCGAAGACGGCAC
CATGACCATGGAGACCGGCGAGGAGCTCCCCGACGACTTCCCCGACATCC
CACTGCCCGGCGAGATGAATATCGAAACGACCTCGAGAGTCGACAACGGC
GACGGCACGGGGCTCCACATCGTCTCGGCGGTCATGGACACCGACGCCAA
GAGCACGTTCGAGGCCTACGGCCGCGCACTCGAGGATGCCGGATTCACCA
TCGACCTGAACAACGTGAGCAACAGCGACGGCGAGTTCTACGGCATGGTC
TTGGCCACTCGAGACGAGACCCTTCAGGTCACGACGGTCCTCGTCACCGA
GGACGGCGGCACCCGTGTTCAGCTGTCGGCCGCCACCCTCGACGGCTGAA
TGACCGTCGACGGCGAAGGCAACATGGTCATCGAGGGCGAAGACGGCACC
ATGACCATGGAGACCGGCGAGGAGCTCCCCGACGACTTCCCCGACATCCC
ACTGCCCGGCGAGATGAATATCGAAACGACCTCGAGAGTCGACAACGGCG
ACGGCACGGGGCTCCACATCGTCTCGGCGGTCATGGACACCGACGCCAAG
AGCACGTTCGAGGCCTACGGCCGCGCACTCGAGGATGCCGGATTCACCAT
CGACCTGAACAACGTGAGCAACAGCGACGGCGAGTTCTACGGCATGGTCT
TGGCCACTCGAGACGAGACCCTTCAGGTCACGACGGTCCTCGTCACCGAG
GACGGCGGCACCCGTGTTCAGCTGTCGGCCGCCACCCTCGACGGCTGA
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