mRNA_M-pyrifera_M_contig8307.19402.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8307.19402.1
Unique NamemRNA_M-pyrifera_M_contig8307.19402.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8307.19402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8307contigM-pyrifera_M_contig8307:2290..2960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size671
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8307.19402.1prot_M-pyrifera_M_contig8307.19402.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8307 2543..2929 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816737.5555177-UTR-M-pyrifera_M_contig8307:2289..25421622816737.5555177-UTR-M-pyrifera_M_contig8307:2289..2542Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8307 2290..2542 +
1692278148.8817995-UTR-M-pyrifera_M_contig8307:2289..25421692278148.8817995-UTR-M-pyrifera_M_contig8307:2289..2542Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8307 2290..2542 +
1622816737.5789769-UTR-M-pyrifera_M_contig8307:2929..29601622816737.5789769-UTR-M-pyrifera_M_contig8307:2929..2960Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8307 2930..2960 +
1692278148.9037094-UTR-M-pyrifera_M_contig8307:2929..29601692278148.9037094-UTR-M-pyrifera_M_contig8307:2929..2960Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8307 2930..2960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816737.5686636-CDS-M-pyrifera_M_contig8307:2542..29291622816737.5686636-CDS-M-pyrifera_M_contig8307:2542..2929Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8307 2543..2929 +
1692278148.8943639-CDS-M-pyrifera_M_contig8307:2542..29291692278148.8943639-CDS-M-pyrifera_M_contig8307:2542..2929Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8307 2543..2929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8307.19402.1

>prot_M-pyrifera_M_contig8307.19402.1 ID=prot_M-pyrifera_M_contig8307.19402.1|Name=mRNA_M-pyrifera_M_contig8307.19402.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
MIPEHTPETKSGCHEHDIRRLSNRTFFYVQGRTGNESPVLRLGAAFRTEQ
SCRHTCKQPPTPQPQRRTGTSFEPGLLLHATPGAGIKGSDHILLRRQLAF
MTSKVFTTTTRLHPLTSASCRDAWLMIK*
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mRNA from alignment at M-pyrifera_M_contig8307:2290..2960+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8307.19402.1 ID=mRNA_M-pyrifera_M_contig8307.19402.1|Name=mRNA_M-pyrifera_M_contig8307.19402.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=671bp|location=Sequence derived from alignment at M-pyrifera_M_contig8307:2290..2960+ (Macrocystis pyrifera P11B4 male)
CCGCGGTTACGTGGCAGGCAGGAAAGCACGAAAGTGTGATAATACTTCGA
AGCACCGCCATGTATTTCCGTGCGAGCGAGTACTCCAAACTATGTTAGAA
TAAACCCACAACGCAACAGCACGCGCACTTTACACACCAGTGCAGTAGAC
TGCTGTATTCCTGGTACACCGCACACGAAAAATACACCCTCGCACTGGAG
ACAATTCCCCATTGTCATCTAACGGCACGCAACTGCTGTTGCGTCTGGAC
CCAATGATTCCGGAACACACACCAGAAACAAAATCCGGTTGTCATGAACA
CGACATCCGTCGCCTCTCGAATCGGACATTCTTCTACGTACAAGGACGCA
CTGGCAACGAATCCCCTGTACTACGGCTGGGTGCGGCCTTTCGAACCGAA
CAAAGTTGCAGGCACACCTGCAAACAACCCCCAACACCACAACCGCAGCG
GCGTACAGGTACGAGTTTCGAACCAGGTCTTCTGCTGCACGCCACTCCTG
GTGCAGGAATAAAGGGTAGCGATCACATTCTTCTGAGACGACAGCTAGCG
TTTATGACGAGCAAAGTATTCACCACAACAACGCGGCTGCACCCCTTAAC
CTCCGCCTCCTGCCGGGATGCGTGGTTAATGATCAAATGACTAAGGCAAA
CAACAAAATGTTGCGACCGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8307:2290..2960+

>mRNA_M-pyrifera_M_contig8307.19402.1 ID=mRNA_M-pyrifera_M_contig8307.19402.1|Name=mRNA_M-pyrifera_M_contig8307.19402.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig8307:2290..2960+ (Macrocystis pyrifera P11B4 male)
ATGATTCCGGAACACACACCAGAAACAAAATCCGGTTGTCATGAACACGA
CATCCGTCGCCTCTCGAATCGGACATTCTTCTACGTACAAGGACGCACTG
GCAACGAATCCCCTGTACTACGGCTGGGTGCGGCCTTTCGAACCGAACAA
AGTTGCAGGCACACCTGCAAACAACCCCCAACACCACAACCGCAGCGGCG
TACAGGTACGAGTTTCGAACCAGGTCTTCTGCTGCACGCCACTCCTGGTG
CAGGAATAAAGGGTAGCGATCACATTCTTCTGAGACGACAGCTAGCGTTT
ATGACGAGCAAAGTATTCACCACAACAACGCGGCTGCACCCCTTAACCTC
CGCCTCCTGCCGGGATGCGTGGTTAATGATCAAATGAATGATTCCGGAAC
ACACACCAGAAACAAAATCCGGTTGTCATGAACACGACATCCGTCGCCTC
TCGAATCGGACATTCTTCTACGTACAAGGACGCACTGGCAACGAATCCCC
TGTACTACGGCTGGGTGCGGCCTTTCGAACCGAACAAAGTTGCAGGCACA
CCTGCAAACAACCCCCAACACCACAACCGCAGCGGCGTACAGGTACGAGT
TTCGAACCAGGTCTTCTGCTGCACGCCACTCCTGGTGCAGGAATAAAGGG
TAGCGATCACATTCTTCTGAGACGACAGCTAGCGTTTATGACGAGCAAAG
TATTCACCACAACAACGCGGCTGCACCCCTTAACCTCCGCCTCCTGCCGG
GATGCGTGGTTAATGATCAAATGA
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