mRNA_M-pyrifera_M_contig8302.19393.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8302.19393.1
Unique NamemRNA_M-pyrifera_M_contig8302.19393.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8302.19393.1 vs. uniprot
Match: A0A6H5KC18_9PHAE (PKS_ER domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KC18_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 9.520e-12
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 IDVQPLITHRFSLTKDFSAKTINEGFEVSARGGDAIKV 114
            IDVQPLITHRFSL  +F++ TINEGF+VSARGGDAIKV
Sbjct:  318 IDVQPLITHRFSLATNFTSDTINEGFKVSARGGDAIKV 355
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BLAST of mRNA_M-pyrifera_M_contig8302.19393.1 vs. uniprot
Match: Q4PZH9_9CARY (Sorbitol dehydrogenase (Fragment) n=1 Tax=Knorringia sibirica TaxID=328376 RepID=Q4PZH9_9CARY)

HSP 1 Score: 50.4 bits (119), Expect = 2.660e-7
Identity = 25/38 (65.79%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    1 IDVQPLITHRFSLTKDFSAKTINEGFEVSARGGDAIKV 114
            IDV+PLITHRF     FS K + + FE SARGGDAIKV
Sbjct:   18 IDVKPLITHRFG----FSQKDVEDAFETSARGGDAIKV 51
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BLAST of mRNA_M-pyrifera_M_contig8302.19393.1 vs. uniprot
Match: UPI0009E619E4 (sorbitol dehydrogenase-like n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E619E4)

HSP 1 Score: 51.2 bits (121), Expect = 4.900e-7
Identity = 26/38 (68.42%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 IDVQPLITHRFSLTKDFSAKTINEGFEVSARGGDAIKV 114
            IDV+PLITHRF     FS K + E FEVSARGG+AIKV
Sbjct:   77 IDVKPLITHRFG----FSQKEVEEAFEVSARGGNAIKV 110
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BLAST of mRNA_M-pyrifera_M_contig8302.19393.1 vs. uniprot
Match: A0A836CMG9_9STRA (Sorbitol dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMG9_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 5.790e-7
Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 IDVQPLITHRFSLTKDFSAKTINEGFEVSARGGDAIKVRQG 123
            IDVQPLIT+RF+L   FS + I EGFEVSA+G +AIK   G
Sbjct:  317 IDVQPLITNRFNLVGGFSQEVIKEGFEVSAKGRNAIKADAG 357
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BLAST of mRNA_M-pyrifera_M_contig8302.19393.1 vs. uniprot
Match: A0A1U8GZL2_CAPAN (L-idonate 5-dehydrogenase n=6 Tax=Solanoideae TaxID=424551 RepID=A0A1U8GZL2_CAPAN)

HSP 1 Score: 51.6 bits (122), Expect = 2.030e-6
Identity = 26/38 (68.42%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    1 IDVQPLITHRFSLTKDFSAKTINEGFEVSARGGDAIKV 114
            IDV+PLITHRF     FS K + E FE SARGGDAIKV
Sbjct:  318 IDVKPLITHRFG----FSQKEVEEAFETSARGGDAIKV 351
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BLAST of mRNA_M-pyrifera_M_contig8302.19393.1 vs. uniprot
Match: A0A803M0K0_CHEQI (PKS_ER domain-containing protein n=3 Tax=Chenopodiaceae TaxID=1804623 RepID=A0A803M0K0_CHEQI)

HSP 1 Score: 51.6 bits (122), Expect = 2.030e-6
Identity = 26/38 (68.42%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    1 IDVQPLITHRFSLTKDFSAKTINEGFEVSARGGDAIKV 114
            IDV+PLITHRF     FS K + E FE SARGGDAIKV
Sbjct:  323 IDVKPLITHRFG----FSQKEVEEAFETSARGGDAIKV 356
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BLAST of mRNA_M-pyrifera_M_contig8302.19393.1 vs. uniprot
Match: A0A0D2T8F2_GOSRA (PKS_ER domain-containing protein n=26 Tax=Malvoideae TaxID=214907 RepID=A0A0D2T8F2_GOSRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.030e-6
Identity = 26/38 (68.42%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    1 IDVQPLITHRFSLTKDFSAKTINEGFEVSARGGDAIKV 114
            IDV+PLITHRF     FS K + E FE SARGGDAIKV
Sbjct:  324 IDVKPLITHRFG----FSQKEVEEAFETSARGGDAIKV 357
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BLAST of mRNA_M-pyrifera_M_contig8302.19393.1 vs. uniprot
Match: A0A067JHS3_JATCU (PKS_ER domain-containing protein n=1 Tax=Jatropha curcas TaxID=180498 RepID=A0A067JHS3_JATCU)

HSP 1 Score: 51.6 bits (122), Expect = 2.030e-6
Identity = 26/38 (68.42%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 IDVQPLITHRFSLTKDFSAKTINEGFEVSARGGDAIKV 114
            IDV+PLITHRFS    FS + + E FE SARGGDAIKV
Sbjct:  324 IDVKPLITHRFS----FSQEEVEEAFETSARGGDAIKV 357
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BLAST of mRNA_M-pyrifera_M_contig8302.19393.1 vs. uniprot
Match: A0A0K9QY45_SPIOL (PKS_ER domain-containing protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QY45_SPIOL)

HSP 1 Score: 51.6 bits (122), Expect = 2.030e-6
Identity = 26/38 (68.42%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    1 IDVQPLITHRFSLTKDFSAKTINEGFEVSARGGDAIKV 114
            IDV+PLITHRF     FS K + E FE SARGGDAIKV
Sbjct:  325 IDVKPLITHRFG----FSQKEVEEAFETSARGGDAIKV 358
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BLAST of mRNA_M-pyrifera_M_contig8302.19393.1 vs. uniprot
Match: A0A8J5YAR2_9ROSI (PKS_ER domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YAR2_9ROSI)

HSP 1 Score: 51.6 bits (122), Expect = 2.030e-6
Identity = 26/38 (68.42%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    1 IDVQPLITHRFSLTKDFSAKTINEGFEVSARGGDAIKV 114
            IDV+PLITHRF     FS K + E FE SARGGDAIKV
Sbjct:  689 IDVKPLITHRFG----FSQKEVEEAFETSARGGDAIKV 722
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8302.19393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KC18_9PHAE9.520e-1281.58PKS_ER domain-containing protein n=2 Tax=Ectocarpu... [more]
Q4PZH9_9CARY2.660e-765.79Sorbitol dehydrogenase (Fragment) n=1 Tax=Knorring... [more]
UPI0009E619E44.900e-768.42sorbitol dehydrogenase-like n=1 Tax=Phalaenopsis e... [more]
A0A836CMG9_9STRA5.790e-763.41Sorbitol dehydrogenase n=1 Tax=Tribonema minus Tax... [more]
A0A1U8GZL2_CAPAN2.030e-668.42L-idonate 5-dehydrogenase n=6 Tax=Solanoideae TaxI... [more]
A0A803M0K0_CHEQI2.030e-668.42PKS_ER domain-containing protein n=3 Tax=Chenopodi... [more]
A0A0D2T8F2_GOSRA2.030e-668.42PKS_ER domain-containing protein n=26 Tax=Malvoide... [more]
A0A067JHS3_JATCU2.030e-668.42PKS_ER domain-containing protein n=1 Tax=Jatropha ... [more]
A0A0K9QY45_SPIOL2.030e-668.42PKS_ER domain-containing protein n=1 Tax=Spinacia ... [more]
A0A8J5YAR2_9ROSI2.030e-668.42PKS_ER domain-containing protein n=1 Tax=Gossypium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8302contigM-pyrifera_M_contig8302:8745..8870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue2.6e-08
Seed eggNOG ortholog2880.D7FK11
KEGG rclassRC00085,RC00102
KEGG koko:K00008,ko:K19635
KEGG ReactionR00875,R01896
KEGG Pathwayko00040,ko00051,ko01100,map00040,map00051,map01100
KEGG ModuleM00014
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0003939,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005911,GO:0008150,GO:0008152,GO:0009506,GO:0016491,GO:0016614,GO:0016616,GO:0030054,GO:0044424,GO:0044444,GO:0044464,GO:0055044,GO:0055114
EggNOG free text desc.L-arabinose catabolic process
EggNOG OGsCOG1063@1,KOG0024@2759
EC1.1.1.14,1.1.1.366
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size126
Cds size126
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816737.2318347-CDS-M-pyrifera_M_contig8302:8744..88701622816737.2318347-CDS-M-pyrifera_M_contig8302:8744..8870Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8302 8745..8870 -
1692278148.7609107-CDS-M-pyrifera_M_contig8302:8744..88701692278148.7609107-CDS-M-pyrifera_M_contig8302:8744..8870Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8302 8745..8870 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8302.19393.1prot_M-pyrifera_M_contig8302.19393.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8302 8745..8870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8302.19393.1

>prot_M-pyrifera_M_contig8302.19393.1 ID=prot_M-pyrifera_M_contig8302.19393.1|Name=mRNA_M-pyrifera_M_contig8302.19393.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=42bp
IDVQPLITHRFSLTKDFSAKTINEGFEVSARGGDAIKVRQG*
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mRNA from alignment at M-pyrifera_M_contig8302:8745..8870-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8302.19393.1 ID=mRNA_M-pyrifera_M_contig8302.19393.1|Name=mRNA_M-pyrifera_M_contig8302.19393.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=126bp|location=Sequence derived from alignment at M-pyrifera_M_contig8302:8745..8870- (Macrocystis pyrifera P11B4 male)
ATCGACGTCCAGCCGCTCATCACGCACCGGTTTAGCCTAACGAAAGATTT
CAGCGCGAAAACGATCAACGAGGGATTCGAGGTGTCTGCGAGGGGAGGGG
ATGCGATCAAGGTGCGTCAGGGTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8302:8745..8870-

>mRNA_M-pyrifera_M_contig8302.19393.1 ID=mRNA_M-pyrifera_M_contig8302.19393.1|Name=mRNA_M-pyrifera_M_contig8302.19393.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig8302:8745..8870- (Macrocystis pyrifera P11B4 male)
ATCGACGTCCAGCCGCTCATCACGCACCGGTTTAGCCTAACGAAAGATTT
CAGCGCGAAAACGATCAACGAGGGATTCGAGGTGTCTGCGAGGGGAGGGG
ATGCGATCAAGGTGCGTCAGGGTTGAATCGACGTCCAGCCGCTCATCACG
CACCGGTTTAGCCTAACGAAAGATTTCAGCGCGAAAACGATCAACGAGGG
ATTCGAGGTGTCTGCGAGGGGAGGGGATGCGATCAAGGTGCGTCAGGGTT
GA
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