mRNA_M-pyrifera_M_contig83015.19392.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83015.19392.1
Unique NamemRNA_M-pyrifera_M_contig83015.19392.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83015.19392.1 vs. uniprot
Match: A0A223A9S5_MALDO (ATPase I subunit n=6 Tax=Mesangiospermae TaxID=1437183 RepID=A0A223A9S5_MALDO)

HSP 1 Score: 120 bits (300), Expect = 1.220e-34
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 MKNVTDSFLSLGYWPSAGSFGFNTDILATNPINLSVVLGVLIFFGKGVCASCLFQE 168
            MKNVTDSFLSLGYWPSAGSFGFNTDILATNPINLSVVLGVLIFFGKGVCASCLFQE
Sbjct:    1 MKNVTDSFLSLGYWPSAGSFGFNTDILATNPINLSVVLGVLIFFGKGVCASCLFQE 56
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BLAST of mRNA_M-pyrifera_M_contig83015.19392.1 vs. uniprot
Match: A0A0C5CUL8_SOLLC (AtpF protein n=7 Tax=cellular organisms TaxID=131567 RepID=A0A0C5CUL8_SOLLC)

HSP 1 Score: 117 bits (292), Expect = 2.020e-33
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 MKNVTDSFLSLGYWPSAGSFGFNTDILATNPINLSVVLGVLIFFGKGVCASCLFQE 168
            MKNVTDSF+SLG+WPSAGSFGFNTDILATNPINLSVVLGVLIFFGKGVCASCLFQE
Sbjct:    1 MKNVTDSFVSLGHWPSAGSFGFNTDILATNPINLSVVLGVLIFFGKGVCASCLFQE 56
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BLAST of mRNA_M-pyrifera_M_contig83015.19392.1 vs. uniprot
Match: A0A7T8IKR5_9ROSI (AtpF n=3 Tax=Pentapetalae TaxID=1437201 RepID=A0A7T8IKR5_9ROSI)

HSP 1 Score: 115 bits (287), Expect = 1.170e-32
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 MKNVTDSFLSLGYWPSAGSFGFNTDILATNPINLSVVLGVLIFFGKGVCASCLFQE 168
            MKNVTDSF+SLG+WPSAGSFGFNTDILATNPINLS+VLGVLIFFGKGVCA CLFQE
Sbjct:    1 MKNVTDSFVSLGHWPSAGSFGFNTDILATNPINLSIVLGVLIFFGKGVCAGCLFQE 56
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BLAST of mRNA_M-pyrifera_M_contig83015.19392.1 vs. uniprot
Match: A0A7G7XQV5_9LAMI (ATP synthase CF0 subunit I n=10 Tax=Mesangiospermae TaxID=1437183 RepID=A0A7G7XQV5_9LAMI)

HSP 1 Score: 114 bits (285), Expect = 2.370e-32
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 MKNVTDSFLSLGYWPSAGSFGFNTDILATNPINLSVVLGVLIFFGKGVCASCLFQE 168
            MKNVTDSFLSLG+WPSAGSFGFNTDI ATNPINLSVV+GVLIFFGKGVC SCLFQE
Sbjct:    1 MKNVTDSFLSLGHWPSAGSFGFNTDIFATNPINLSVVIGVLIFFGKGVCVSCLFQE 56
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BLAST of mRNA_M-pyrifera_M_contig83015.19392.1 vs. uniprot
Match: A0A6M8PCD2_9FABA (ATP synthase subunit b, chloroplastic n=19 Tax=rosids TaxID=71275 RepID=A0A6M8PCD2_9FABA)

HSP 1 Score: 118 bits (295), Expect = 3.080e-32
Identity = 53/56 (94.64%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 MKNVTDSFLSLGYWPSAGSFGFNTDILATNPINLSVVLGVLIFFGKGVCASCLFQE 168
            MKN+TDSFLSLGYWPSAGSFGFNTDILATNPINLSVVLGVL+FFGKGVCASCLFQ+
Sbjct:    1 MKNITDSFLSLGYWPSAGSFGFNTDILATNPINLSVVLGVLVFFGKGVCASCLFQD 56
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BLAST of mRNA_M-pyrifera_M_contig83015.19392.1 vs. uniprot
Match: A0A2P1JHJ4_9ROSI (ATP synthase CF0 B subunit n=4 Tax=cellular organisms TaxID=131567 RepID=A0A2P1JHJ4_9ROSI)

HSP 1 Score: 113 bits (282), Expect = 6.810e-32
Identity = 53/56 (94.64%), Postives = 53/56 (94.64%), Query Frame = 1 
Query:    1 MKNVTDSFLSLGYWPSAGSFGFNTDILATNPINLSVVLGVLIFFGKGVCASCLFQE 168
            MKNVTDSFLSLGYW S GSFGFNTDILATNPINLSVV GVLIFFGKGVCASCLFQE
Sbjct:    1 MKNVTDSFLSLGYWSSDGSFGFNTDILATNPINLSVVFGVLIFFGKGVCASCLFQE 56
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BLAST of mRNA_M-pyrifera_M_contig83015.19392.1 vs. uniprot
Match: A0A7T8E4G1_9ROSI (AtpF n=1 Tax=Balakata baccata TaxID=571348 RepID=A0A7T8E4G1_9ROSI)

HSP 1 Score: 110 bits (276), Expect = 5.620e-31
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 MKNVTDSFLSLGYWPSAGSFGFNTDILATNPINLSVVLGVLIFFGKGVCASCLFQE 168
            M NVTDSF+SLG+WPSAGSFGFNTDILATNPINLSVVLGVLIFFGKGVCAS LFQE
Sbjct:    1 MNNVTDSFVSLGHWPSAGSFGFNTDILATNPINLSVVLGVLIFFGKGVCASWLFQE 56
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BLAST of mRNA_M-pyrifera_M_contig83015.19392.1 vs. uniprot
Match: A0A286M571_9ROSA (ATP synthase subunit b, chloroplastic n=8 Tax=Amygdaloideae TaxID=171637 RepID=A0A286M571_9ROSA)

HSP 1 Score: 114 bits (286), Expect = 7.080e-31
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 MKNVTDSFLSLGYWPSAGSFGFNTDILATNPINLSVVLGVLIFFGKGVCASCLFQE 168
            MKNVTDSFLSLGYWPSAGSFGFNTDILATNPINLSVVLGVLIFFGKGVCASCL  +
Sbjct:    1 MKNVTDSFLSLGYWPSAGSFGFNTDILATNPINLSVVLGVLIFFGKGVCASCLLSD 56
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BLAST of mRNA_M-pyrifera_M_contig83015.19392.1 vs. uniprot
Match: A0A343W116_BOMCI (ATP synthase subunit b, chloroplastic n=7 Tax=Malvaceae TaxID=3629 RepID=A0A343W116_BOMCI)

HSP 1 Score: 114 bits (285), Expect = 1.030e-30
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 MKNVTDSFLSLGYWPSAGSFGFNTDILATNPINLSVVLGVLIFFGKGVCASCLF 162
            MKNVTDSF+SLGYWPSAGSFGFNTDILATNPINLSVVLGVLIFFGKGVCASCLF
Sbjct:    1 MKNVTDSFVSLGYWPSAGSFGFNTDILATNPINLSVVLGVLIFFGKGVCASCLF 54
[Close]
BLAST of mRNA_M-pyrifera_M_contig83015.19392.1 vs. uniprot
Match: A0A7T7FM74_EXAAF (ATP synthase subunit b, chloroplastic n=1 Tax=Exacum affine TaxID=13525 RepID=A0A7T7FM74_EXAAF)

HSP 1 Score: 113 bits (283), Expect = 2.820e-30
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 MKNVTDSFLSLGYWPSAGSFGFNTDILATNPINLSVVLGVLIFFGKGVCASCLFQE 168
            MKNVTDSFLSLGYWPSAGSFGFNTDI +TN INLSVVLGVLIFFGKGVCASCLFQE
Sbjct:    1 MKNVTDSFLSLGYWPSAGSFGFNTDIFSTNLINLSVVLGVLIFFGKGVCASCLFQE 56
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83015.19392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A223A9S5_MALDO1.220e-34100.00ATPase I subunit n=6 Tax=Mesangiospermae TaxID=143... [more]
A0A0C5CUL8_SOLLC2.020e-3396.43AtpF protein n=7 Tax=cellular organisms TaxID=1315... [more]
A0A7T8IKR5_9ROSI1.170e-3292.86AtpF n=3 Tax=Pentapetalae TaxID=1437201 RepID=A0A7... [more]
A0A7G7XQV5_9LAMI2.370e-3292.86ATP synthase CF0 subunit I n=10 Tax=Mesangiosperma... [more]
A0A6M8PCD2_9FABA3.080e-3294.64ATP synthase subunit b, chloroplastic n=19 Tax=ros... [more]
A0A2P1JHJ4_9ROSI6.810e-3294.64ATP synthase CF0 B subunit n=4 Tax=cellular organi... [more]
A0A7T8E4G1_9ROSI5.620e-3192.86AtpF n=1 Tax=Balakata baccata TaxID=571348 RepID=A... [more]
A0A286M571_9ROSA7.080e-3194.64ATP synthase subunit b, chloroplastic n=8 Tax=Amyg... [more]
A0A343W116_BOMCI1.030e-3098.15ATP synthase subunit b, chloroplastic n=7 Tax=Malv... [more]
A0A7T7FM74_EXAAF2.820e-3094.64ATP synthase subunit b, chloroplastic n=1 Tax=Exac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83015contigM-pyrifera_M_contig83015:152..322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score113.2
Seed ortholog evalue3.9e-23
Seed eggNOG ortholog4155.Migut.D01335.1.p
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2CRA8@1,2R7GU@2759,38A7Q@33090,3GMUP@35493
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size171
Cds size171
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816737.1968272-CDS-M-pyrifera_M_contig83015:151..3221622816737.1968272-CDS-M-pyrifera_M_contig83015:151..322Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83015 152..322 -
1692278148.7467847-CDS-M-pyrifera_M_contig83015:151..3221692278148.7467847-CDS-M-pyrifera_M_contig83015:151..322Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83015 152..322 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83015.19392.1prot_M-pyrifera_M_contig83015.19392.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83015 152..322 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83015.19392.1

>prot_M-pyrifera_M_contig83015.19392.1 ID=prot_M-pyrifera_M_contig83015.19392.1|Name=mRNA_M-pyrifera_M_contig83015.19392.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=57bp
MKNVTDSFLSLGYWPSAGSFGFNTDILATNPINLSVVLGVLIFFGKGVCA
SCLFQE*
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mRNA from alignment at M-pyrifera_M_contig83015:152..322-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83015.19392.1 ID=mRNA_M-pyrifera_M_contig83015.19392.1|Name=mRNA_M-pyrifera_M_contig83015.19392.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig83015:152..322- (Macrocystis pyrifera P11B4 male)
ATGAAAAATGTAACCGATTCTTTCCTTTCCTTGGGTTATTGGCCATCCGC
CGGGAGTTTCGGGTTTAATACCGATATTTTAGCAACAAATCCAATAAATC
TAAGCGTAGTGCTTGGTGTGTTGATTTTTTTTGGAAAGGGAGTGTGTGCG
AGTTGTTTATTTCAAGAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83015:152..322-

>mRNA_M-pyrifera_M_contig83015.19392.1 ID=mRNA_M-pyrifera_M_contig83015.19392.1|Name=mRNA_M-pyrifera_M_contig83015.19392.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig83015:152..322- (Macrocystis pyrifera P11B4 male)
ATGAAAAATGTAACCGATTCTTTCCTTTCCTTGGGTTATTGGCCATCCGC
CGGGAGTTTCGGGTTTAATACCGATATTTTAGCAACAAATCCAATAAATC
TAAGCGTAGTGCTTGGTGTGTTGATTTTTTTTGGAAAGGGAGTGTGTGCG
AGTTGTTTATTTCAAGAATAGATGAAAAATGTAACCGATTCTTTCCTTTC
CTTGGGTTATTGGCCATCCGCCGGGAGTTTCGGGTTTAATACCGATATTT
TAGCAACAAATCCAATAAATCTAAGCGTAGTGCTTGGTGTGTTGATTTTT
TTTGGAAAGGGAGTGTGTGCGAGTTGTTTATTTCAAGAATAG
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