mRNA_M-pyrifera_M_contig109273.1939.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109273.1939.1
Unique NamemRNA_M-pyrifera_M_contig109273.1939.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig109273.1939.1 vs. uniprot
Match: A0A453IT19_AEGTS (ABC transporter domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453IT19_AEGTS)

HSP 1 Score: 105 bits (261), Expect = 7.030e-26
Identity = 52/95 (54.74%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:    1 VLLLDECTSGLDAASASRMLGLLHDLAAKGRTVVTTIHQPNSSMFRKFDRLLVLARGRVLFFGPTAEAVSWFAANEVPCPPLT--NPADFILDIA 279
            +L LDE TSGLD+ +A R++ LLHD+A  G+TV+TTIHQP+S +F KFD+L++L RG +L+FG TAEA+ +F++  + C PL   NPA+F+LD+A
Sbjct:  109 LLFLDEPTSGLDSTTALRIVQLLHDIAETGKTVITTIHQPSSRLFHKFDKLILLGRGSLLYFGKTAEAMPYFSS--IGCNPLIAMNPAEFLLDLA 201
[Close]
BLAST of mRNA_M-pyrifera_M_contig109273.1939.1 vs. uniprot
Match: A0A453ISS4_AEGTS (ABC transporter domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453ISS4_AEGTS)

HSP 1 Score: 105 bits (261), Expect = 2.490e-25
Identity = 52/95 (54.74%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:    1 VLLLDECTSGLDAASASRMLGLLHDLAAKGRTVVTTIHQPNSSMFRKFDRLLVLARGRVLFFGPTAEAVSWFAANEVPCPPLT--NPADFILDIA 279
            +L LDE TSGLD+ +A R++ LLHD+A  G+TV+TTIHQP+S +F KFD+L++L RG +L+FG TAEA+ +F++  + C PL   NPA+F+LD+A
Sbjct:  175 LLFLDEPTSGLDSTTALRIVQLLHDIAETGKTVITTIHQPSSRLFHKFDKLILLGRGSLLYFGKTAEAMPYFSS--IGCNPLIAMNPAEFLLDLA 267
[Close]
BLAST of mRNA_M-pyrifera_M_contig109273.1939.1 vs. uniprot
Match: A0A453IT24_AEGTS (Uncharacterized protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453IT24_AEGTS)

HSP 1 Score: 105 bits (261), Expect = 3.480e-25
Identity = 52/95 (54.74%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:    1 VLLLDECTSGLDAASASRMLGLLHDLAAKGRTVVTTIHQPNSSMFRKFDRLLVLARGRVLFFGPTAEAVSWFAANEVPCPPLT--NPADFILDIA 279
            +L LDE TSGLD+ +A R++ LLHD+A  G+TV+TTIHQP+S +F KFD+L++L RG +L+FG TAEA+ +F++  + C PL   NPA+F+LD+A
Sbjct:   55 LLFLDEPTSGLDSTTALRIVQLLHDIAETGKTVITTIHQPSSRLFHKFDKLILLGRGSLLYFGKTAEAMPYFSS--IGCNPLIAMNPAEFLLDLA 147
[Close]
BLAST of mRNA_M-pyrifera_M_contig109273.1939.1 vs. uniprot
Match: A0A453ISR4_AEGTS (ABC transporter domain-containing protein n=5 Tax=Triticinae TaxID=1648030 RepID=A0A453ISR4_AEGTS)

HSP 1 Score: 105 bits (261), Expect = 8.620e-25
Identity = 52/95 (54.74%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:    1 VLLLDECTSGLDAASASRMLGLLHDLAAKGRTVVTTIHQPNSSMFRKFDRLLVLARGRVLFFGPTAEAVSWFAANEVPCPPLT--NPADFILDIA 279
            +L LDE TSGLD+ +A R++ LLHD+A  G+TV+TTIHQP+S +F KFD+L++L RG +L+FG TAEA+ +F++  + C PL   NPA+F+LD+A
Sbjct:  161 LLFLDEPTSGLDSTTALRIVQLLHDIAETGKTVITTIHQPSSRLFHKFDKLILLGRGSLLYFGKTAEAMPYFSS--IGCNPLIAMNPAEFLLDLA 253
[Close]
BLAST of mRNA_M-pyrifera_M_contig109273.1939.1 vs. uniprot
Match: A0A7S0BHQ6_9RHOD (Probable ATP-dependent transporter ycf16 n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BHQ6_9RHOD)

HSP 1 Score: 102 bits (254), Expect = 9.170e-25
Identity = 48/92 (52.17%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:    1 VLLLDECTSGLDAASASRMLGLLHDLAAKGRTVVTTIHQPNSSMFRKFDRLLVLARGRVLFFGPTAEAVSWFAANEVPCPPLTNPADFILDI 276
            ++ LDE TSGLD+ +A  ++  L  LA +GRT+VTTIHQP S++F  FD+LL+L++G V++FGP  EAV +F     PCPP  NPADF++D+
Sbjct:  141 LIFLDEPTSGLDSFNALNVMQSLRSLAERGRTIVTTIHQPRSNIFTLFDQLLLLSKGEVVYFGPANEAVGYFTKLGHPCPPEFNPADFMIDL 232
[Close]
BLAST of mRNA_M-pyrifera_M_contig109273.1939.1 vs. uniprot
Match: A0A453IT14_AEGTS (ABC2_membrane domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453IT14_AEGTS)

HSP 1 Score: 105 bits (261), Expect = 9.630e-25
Identity = 52/95 (54.74%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:    1 VLLLDECTSGLDAASASRMLGLLHDLAAKGRTVVTTIHQPNSSMFRKFDRLLVLARGRVLFFGPTAEAVSWFAANEVPCPPLT--NPADFILDIA 279
            +L LDE TSGLD+ +A R++ LLHD+A  G+TV+TTIHQP+S +F KFD+L++L RG +L+FG TAEA+ +F++  + C PL   NPA+F+LD+A
Sbjct:   30 LLFLDEPTSGLDSTTALRIVQLLHDIAETGKTVITTIHQPSSRLFHKFDKLILLGRGSLLYFGKTAEAMPYFSS--IGCNPLIAMNPAEFLLDLA 122
[Close]
BLAST of mRNA_M-pyrifera_M_contig109273.1939.1 vs. uniprot
Match: A0A446SD56_TRITD (ABC transporter domain-containing protein n=2 Tax=Triticinae TaxID=1648030 RepID=A0A446SD56_TRITD)

HSP 1 Score: 105 bits (261), Expect = 1.770e-24
Identity = 52/95 (54.74%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:    1 VLLLDECTSGLDAASASRMLGLLHDLAAKGRTVVTTIHQPNSSMFRKFDRLLVLARGRVLFFGPTAEAVSWFAANEVPCPPLT--NPADFILDIA 279
            +L LDE TSGLD+ +A R++ LLHD+A  G+TV+TTIHQP+S +F KFD+L++L RG +L+FG TAEA+ +F++  + C PL   NPA+F+LD+A
Sbjct:  161 LLFLDEPTSGLDSTTALRIVQLLHDIAETGKTVITTIHQPSSRLFHKFDKLILLGRGSLLYFGKTAEAMPYFSS--IGCNPLIAMNPAEFLLDLA 253
[Close]
BLAST of mRNA_M-pyrifera_M_contig109273.1939.1 vs. uniprot
Match: A0A453IT42_AEGTS (ABC transporter domain-containing protein n=3 Tax=Poaceae TaxID=4479 RepID=A0A453IT42_AEGTS)

HSP 1 Score: 105 bits (261), Expect = 2.100e-24
Identity = 52/95 (54.74%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:    1 VLLLDECTSGLDAASASRMLGLLHDLAAKGRTVVTTIHQPNSSMFRKFDRLLVLARGRVLFFGPTAEAVSWFAANEVPCPPLT--NPADFILDIA 279
            +L LDE TSGLD+ +A R++ LLHD+A  G+TV+TTIHQP+S +F KFD+L++L RG +L+FG TAEA+ +F++  + C PL   NPA+F+LD+A
Sbjct:  109 LLFLDEPTSGLDSTTALRIVQLLHDIAETGKTVITTIHQPSSRLFHKFDKLILLGRGSLLYFGKTAEAMPYFSS--IGCNPLIAMNPAEFLLDLA 201
[Close]
BLAST of mRNA_M-pyrifera_M_contig109273.1939.1 vs. uniprot
Match: A0A446SD43_TRITD (ABC transporter domain-containing protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446SD43_TRITD)

HSP 1 Score: 105 bits (261), Expect = 2.370e-24
Identity = 52/95 (54.74%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:    1 VLLLDECTSGLDAASASRMLGLLHDLAAKGRTVVTTIHQPNSSMFRKFDRLLVLARGRVLFFGPTAEAVSWFAANEVPCPPLT--NPADFILDIA 279
            +L LDE TSGLD+ +A R++ LLHD+A  G+TV+TTIHQP+S +F KFD+L++L RG +L+FG TAEA+ +F++  + C PL   NPA+F+LD+A
Sbjct:  161 LLFLDEPTSGLDSTTALRIVQLLHDIAETGKTVITTIHQPSSRLFHKFDKLILLGRGSLLYFGKTAEAMPYFSS--IGCNPLIAMNPAEFLLDLA 253
[Close]
BLAST of mRNA_M-pyrifera_M_contig109273.1939.1 vs. uniprot
Match: A0A453IT12_AEGTS (ABC transporter domain-containing protein n=3 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453IT12_AEGTS)

HSP 1 Score: 105 bits (261), Expect = 2.420e-24
Identity = 52/95 (54.74%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:    1 VLLLDECTSGLDAASASRMLGLLHDLAAKGRTVVTTIHQPNSSMFRKFDRLLVLARGRVLFFGPTAEAVSWFAANEVPCPPLT--NPADFILDIA 279
            +L LDE TSGLD+ +A R++ LLHD+A  G+TV+TTIHQP+S +F KFD+L++L RG +L+FG TAEA+ +F++  + C PL   NPA+F+LD+A
Sbjct:  377 LLFLDEPTSGLDSTTALRIVQLLHDIAETGKTVITTIHQPSSRLFHKFDKLILLGRGSLLYFGKTAEAMPYFSS--IGCNPLIAMNPAEFLLDLA 469
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109273.1939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A453IT19_AEGTS7.030e-2654.74ABC transporter domain-containing protein n=1 Tax=... [more]
A0A453ISS4_AEGTS2.490e-2554.74ABC transporter domain-containing protein n=1 Tax=... [more]
A0A453IT24_AEGTS3.480e-2554.74Uncharacterized protein n=2 Tax=Aegilops tauschii ... [more]
A0A453ISR4_AEGTS8.620e-2554.74ABC transporter domain-containing protein n=5 Tax=... [more]
A0A7S0BHQ6_9RHOD9.170e-2552.17Probable ATP-dependent transporter ycf16 n=1 Tax=R... [more]
A0A453IT14_AEGTS9.630e-2554.74ABC2_membrane domain-containing protein n=1 Tax=Ae... [more]
A0A446SD56_TRITD1.770e-2454.74ABC transporter domain-containing protein n=2 Tax=... [more]
A0A453IT42_AEGTS2.100e-2454.74ABC transporter domain-containing protein n=3 Tax=... [more]
A0A446SD43_TRITD2.370e-2454.74ABC transporter domain-containing protein n=1 Tax=... [more]
A0A453IT12_AEGTS2.420e-2454.74ABC transporter domain-containing protein n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109273contigM-pyrifera_M_contig109273:324..602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score108.6
Seed ortholog evalue1.6e-21
Seed eggNOG ortholog4513.MLOC_59318.2
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006833,GO:0006950,GO:0008150,GO:0009414,GO:0009415,GO:0009628,GO:0010035,GO:0010148,GO:0015399,GO:0015405,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0031224,GO:0042044,GO:0042221,GO:0042623,GO:0042626,GO:0043492,GO:0044425,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:1901700
EggNOG free text desc.ABC-2 type transporter
EggNOG OGs37I5A@33090,3G73T@35493,3I3ZA@38820,3KM1W@4447,COG1131@1,KOG0061@2759
COG Functional cat.Q
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815602.6916687-CDS-M-pyrifera_M_contig109273:323..6021622815602.6916687-CDS-M-pyrifera_M_contig109273:323..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109273 324..602 -
1692277482.8479543-CDS-M-pyrifera_M_contig109273:323..6021692277482.8479543-CDS-M-pyrifera_M_contig109273:323..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109273 324..602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109273.1939.1prot_M-pyrifera_M_contig109273.1939.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109273 324..602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109273.1939.1

>prot_M-pyrifera_M_contig109273.1939.1 ID=prot_M-pyrifera_M_contig109273.1939.1|Name=mRNA_M-pyrifera_M_contig109273.1939.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
VLLLDECTSGLDAASASRMLGLLHDLAAKGRTVVTTIHQPNSSMFRKFDR
LLVLARGRVLFFGPTAEAVSWFAANEVPCPPLTNPADFILDIA
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mRNA from alignment at M-pyrifera_M_contig109273:324..602-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109273.1939.1 ID=mRNA_M-pyrifera_M_contig109273.1939.1|Name=mRNA_M-pyrifera_M_contig109273.1939.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig109273:324..602- (Macrocystis pyrifera P11B4 male)
GTGTTATTGCTGGATGAGTGCACAAGTGGATTAGATGCAGCAAGTGCCTC
TCGAATGCTTGGATTATTGCATGATTTAGCTGCAAAAGGACGCACAGTTG
TGACTACAATTCATCAACCAAACTCTTCCATGTTTCGCAAGTTCGATCGT
CTTCTTGTGCTTGCTCGAGGCAGAGTTCTTTTCTTTGGACCTACAGCAGA
AGCTGTGTCTTGGTTTGCTGCAAACGAAGTCCCATGTCCTCCTCTTACCA
ACCCAGCAGACTTCATCCTTGACATTGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109273:324..602-

>mRNA_M-pyrifera_M_contig109273.1939.1 ID=mRNA_M-pyrifera_M_contig109273.1939.1|Name=mRNA_M-pyrifera_M_contig109273.1939.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig109273:324..602- (Macrocystis pyrifera P11B4 male)
GTGTTATTGCTGGATGAGTGCACAAGTGGATTAGATGCAGCAAGTGCCTC
TCGAATGCTTGGATTATTGCATGATTTAGCTGCAAAAGGACGCACAGTTG
TGACTACAATTCATCAACCAAACTCTTCCATGTTTCGCAAGTTCGATCGT
CTTCTTGTGCTTGCTCGAGGCAGAGTTCTTTTCTTTGGACCTACAGCAGA
AGCTGTGTCTTGGTTTGCTGCAAACGAAGTCCCATGTCCTCCTCTTACCA
ACCCAGCAGACTTCATCCTTGACATTGCCGTGTTATTGCTGGATGAGTGC
ACAAGTGGATTAGATGCAGCAAGTGCCTCTCGAATGCTTGGATTATTGCA
TGATTTAGCTGCAAAAGGACGCACAGTTGTGACTACAATTCATCAACCAA
ACTCTTCCATGTTTCGCAAGTTCGATCGTCTTCTTGTGCTTGCTCGAGGC
AGAGTTCTTTTCTTTGGACCTACAGCAGAAGCTGTGTCTTGGTTTGCTGC
AAACGAAGTCCCATGTCCTCCTCTTACCAACCCAGCAGACTTCATCCTTG
ACATTGCC
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