mRNA_M-pyrifera_M_contig82984.19385.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig82984.19385.1 vs. uniprot
Match: UPI000B3E0F47 (integrin alpha-4 isoform X2 n=2 Tax=Galliformes TaxID=8976 RepID=UPI000B3E0F47) HSP 1 Score: 53.9 bits (128), Expect = 1.780e-6 Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 1 Query: 7 DWDGDGKEEVIVGLPEESFARGSIHVYLTLSSSPKEIFPRVGTSLAIFESPGARFGASIALLGDLNTDGSHREVAVGAP 243 D + DG +++VG P ES R VY+ ++S + +G L+ +S ARFG SIA LGD++ DG +VA+GAP Sbjct: 306 DLNSDGLSDLLVGAPMESTIREEGRVYVYINSGSEAKMVELGIELSGSDSYAARFGESIANLGDIDNDG-FEDVAIGAP 383
BLAST of mRNA_M-pyrifera_M_contig82984.19385.1 vs. uniprot
Match: A0A7K7B0Y3_9AVES (ITA4 protein (Fragment) n=3 Tax=Nothoprocta TaxID=8806 RepID=A0A7K7B0Y3_9AVES) HSP 1 Score: 53.9 bits (128), Expect = 1.840e-6 Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 1 Query: 7 DWDGDGKEEVIVGLPEESFARGSIHVYLTLSSSPKEIFPRVGTSLAIFESPGARFGASIALLGDLNTDGSHREVAVGAP 243 D + DG +++VG P +S R VY+ ++S + + T L+ +S ARFG SIA LGD++ DG + +VA+GAP Sbjct: 316 DLNSDGLSDLLVGAPMQSTIREEGRVYVYINSGSEAKMAELDTELSGSDSYAARFGESIANLGDIDNDG-YEDVAIGAP 393
BLAST of mRNA_M-pyrifera_M_contig82984.19385.1 vs. uniprot
Match: A0A7M4F477_CROPO (Integrin subunit alpha 4 n=1 Tax=Crocodylus porosus TaxID=8502 RepID=A0A7M4F477_CROPO) HSP 1 Score: 53.5 bits (127), Expect = 2.500e-6 Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 1 Query: 7 DWDGDGKEEVIVGLPEESFARGSIHVYLTLSSSPKEIFPRVGTSLAIFESPGARFGASIALLGDLNTDGSHREVAVGAP 243 D + DG +++VG P +S R VY+ ++S K + LA +S ARFG SIA LGD++ DG +VA+GAP Sbjct: 299 DLNADGLSDLLVGAPMQSKVREEGRVYVYINSGSKAAMEELELELAGSDSYAARFGESIANLGDIDNDG-FEDVAIGAP 376
BLAST of mRNA_M-pyrifera_M_contig82984.19385.1 vs. uniprot
Match: A0A3M1VKJ6_9BACT (Uncharacterized protein n=1 Tax=Candidatus Dadabacteria bacterium TaxID=2080303 RepID=A0A3M1VKJ6_9BACT) HSP 1 Score: 53.1 bits (126), Expect = 3.360e-6 Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 1 Query: 1 VGDWDGDGKEEVIVGLPEESFARGSIHVYLTLSSSPKEIF--PRVGTSLAIFESPGARFGASIALLGDLNTDGSHREVAVGAP 243 +GD++GDGK E+ +G+P + A G + +Y SSS K+IF P+ T+ A GAS++ GDLN DG ++ GAP Sbjct: 41 IGDFNGDGKPEIAIGVPRTNIAGGEVRIY---SSSGKKIFTLPKTATTTA------DGLGASVSPAGDLNQDGFD-DIIAGAP 113
BLAST of mRNA_M-pyrifera_M_contig82984.19385.1 vs. uniprot
Match: A0A1U7SC12_ALLSI (integrin alpha-4 n=1 Tax=Alligator sinensis TaxID=38654 RepID=A0A1U7SC12_ALLSI) HSP 1 Score: 53.1 bits (126), Expect = 3.380e-6 Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 1 Query: 7 DWDGDGKEEVIVGLPEESFARGSIHVYLTLSSSPKEIFPRVGTSLAIFESPGARFGASIALLGDLNTDGSHREVAVGAP 243 D + DG +++VG P +S R VY+ ++S K + LA +S ARFG SIA LGD++ DG ++VA+GAP Sbjct: 295 DLNADGFSDLLVGAPMQSKVREEGRVYVYINSGSKAEMKELELELAGSDSYAARFGESIANLGDIDNDG-FKDVAIGAP 372
BLAST of mRNA_M-pyrifera_M_contig82984.19385.1 vs. uniprot
Match: A0A151LZP9_ALLMI (Integrin alpha-4 n=6 Tax=Crocodylia TaxID=1294634 RepID=A0A151LZP9_ALLMI) HSP 1 Score: 53.1 bits (126), Expect = 3.430e-6 Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 1 Query: 7 DWDGDGKEEVIVGLPEESFARGSIHVYLTLSSSPKEIFPRVGTSLAIFESPGARFGASIALLGDLNTDGSHREVAVGAP 243 D + DG +++VG P +S R VY+ ++S K + LA +S ARFG SIA LGD++ DG ++VA+GAP Sbjct: 309 DLNADGFSDLLVGAPMQSKVREEGRVYVYINSGSKAEMKELELELAGSDSYAARFGESIANLGDIDNDG-FKDVAIGAP 386
BLAST of mRNA_M-pyrifera_M_contig82984.19385.1 vs. uniprot
Match: UPI001CF7C16F (integrin alpha-4 isoform X1 n=3 Tax=Varanus komodoensis TaxID=61221 RepID=UPI001CF7C16F) HSP 1 Score: 53.1 bits (126), Expect = 3.430e-6 Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 1 Query: 7 DWDGDGKEEVIVGLPEESFAR--GSIHVYLTLSSSPKEIFPRVGTSLAIFESPGARFGASIALLGDLNTDGSHREVAVGAP 243 D +GDG +++VG P +S R G ++VY+ S K I + T+LA + ARFG SIA LGD++ DG +VA+GAP Sbjct: 341 DLNGDGFSDLLVGAPMDSKVREEGRVYVYINSGSEAKMI--ELETALAGSDLYAARFGESIANLGDIDNDG-FEDVAIGAP 418
BLAST of mRNA_M-pyrifera_M_contig82984.19385.1 vs. uniprot
Match: UPI0005206A69 (LOW QUALITY PROTEIN: integrin alpha-4-like n=1 Tax=Gavia stellata TaxID=37040 RepID=UPI0005206A69) HSP 1 Score: 52.8 bits (125), Expect = 4.660e-6 Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = 1 Query: 7 DWDGDGKEEVIVGLPEESFARGSIHVYLTLSSSPKEIFPRVGTSLAIFESPGARFGASIALLGDLNTDGSHREVAVGAP 243 D + DG +++VG P +S R VY+ ++S + + T L+ +S ARFG SIA LGD++ DG +VA+GAP Sbjct: 281 DLNSDGLSDLLVGAPMQSTIREEGRVYVYINSGSEAKMVELNTELSGSDSYAARFGESIANLGDIDNDG-FEDVAIGAP 358
BLAST of mRNA_M-pyrifera_M_contig82984.19385.1 vs. uniprot
Match: A0A7L3N616_9AVES (ITA4 protein (Fragment) n=3 Tax=Trochilidae TaxID=9242 RepID=A0A7L3N616_9AVES) HSP 1 Score: 52.8 bits (125), Expect = 4.670e-6 Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 1 Query: 7 DWDGDGKEEVIVGLPEESFARGSIHVYLTLSSSPKEIFPRVGTSLAIFESPGARFGASIALLGDLNTDGSHREVAVGAP 243 D + DG +++VG P +S R VY+ ++S + + T+L+ +S ARFG SIA LGD++ DG +VA+GAP Sbjct: 208 DLNADGLSDLLVGAPMQSTIREEGRVYVYINSGSEAKMVELDTALSGSDSYAARFGESIANLGDIDNDG-FEDVAIGAP 285
BLAST of mRNA_M-pyrifera_M_contig82984.19385.1 vs. uniprot
Match: A0A7K8XQD5_9PICI (ITA4 protein (Fragment) n=1 Tax=Eubucco bourcierii TaxID=91767 RepID=A0A7K8XQD5_9PICI) HSP 1 Score: 52.8 bits (125), Expect = 4.690e-6 Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 1 Query: 7 DWDGDGKEEVIVGLPEESFARGSIHVYLTLSSSPKEIFPRVGTSLAIFESPGARFGASIALLGDLNTDGSHREVAVGAP 243 D + DG +++VG P +S R VY+ ++S K + L+ +S ARFG SIA LGD++ DG +VA+GAP Sbjct: 313 DLNSDGLSDLLVGAPMQSTVREEGRVYVYINSGSKAKMVELNIELSGSDSHAARFGESIANLGDIDNDG-FEDVAIGAP 390 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82984.19385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig82984.19385.1 >prot_M-pyrifera_M_contig82984.19385.1 ID=prot_M-pyrifera_M_contig82984.19385.1|Name=mRNA_M-pyrifera_M_contig82984.19385.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp VGDWDGDGKEEVIVGLPEESFARGSIHVYLTLSSSPKEIFPRVGTSLAIFback to top mRNA from alignment at M-pyrifera_M_contig82984:10..261- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig82984.19385.1 ID=mRNA_M-pyrifera_M_contig82984.19385.1|Name=mRNA_M-pyrifera_M_contig82984.19385.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig82984:10..261- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig82984:10..261- >mRNA_M-pyrifera_M_contig82984.19385.1 ID=mRNA_M-pyrifera_M_contig82984.19385.1|Name=mRNA_M-pyrifera_M_contig82984.19385.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig82984:10..261- (Macrocystis pyrifera P11B4 male)back to top |