mRNA_M-pyrifera_M_contig82982.19384.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82982.19384.1
Unique NamemRNA_M-pyrifera_M_contig82982.19384.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82982.19384.1 vs. uniprot
Match: A0A2E0SN39_9PLAN (Iron dicitrate transport regulator FecR n=1 Tax=Planctomyces sp. TaxID=37635 RepID=A0A2E0SN39_9PLAN)

HSP 1 Score: 407 bits (1046), Expect = 1.080e-138
Identity = 206/274 (75.18%), Postives = 231/274 (84.31%), Query Frame = 1
Query:    4 GLLTATVPDGAEGFRVETPSARVVDLGTAFGIEQSANGVSLVSVFDGEVEIVSRKDSHTHSLTEGKTAHLDADGSLTESDFSVEPFAKLWPTASGITGSTGAFRFIPPWPRRLSRIQSDTEIFVLPEGYAGELKQPCPIDQVESESSESNIPAGQRVRSFLLQFNPVDPTEQDTTNSELGSRMRRIEGSITFDRPVIGLITSSPTLNVTDEVFGLRRGPIPPFKRGLELSNPRTADVVSLSEDRRTLTLKLAVFNQLSDHVRVIVDASLADFLD 825
            GLLTATVP GAEGFRV+TPSA+VVDLGTAFGI+Q A+G S VSVFDGEVEI+S +DS    LTEG+T  L ADGS+++ +F+ +PF KLWPTASGI GSTGAFRF PPWPR LSRIQSDTEIFVLPEGYA +L++PCPID  ESE + S+IPAGQRVRS+LLQFNPVDPT Q+  + ELGSRMRRIEGSITFDRPVIG+I +  TL  TDE+F L RGPI PF RGLELS  RTADVVSLSEDR TLTLKLAVF+Q SDHVRVIVDASL D  D
Sbjct:  179 GLLTATVPPGAEGFRVDTPSAQVVDLGTAFGIDQRADGTSTVSVFDGEVEILSGEDSGKRLLTEGRTVRLAADGSMSDVEFNSQPFEKLWPTASGIAGSTGAFRFAPPWPRGLSRIQSDTEIFVLPEGYASKLEEPCPIDMTESELNTSSIPAGQRVRSYLLQFNPVDPTGQEAASIELGSRMRRIEGSITFDRPVIGMIVNGETLKATDEIFSLNRGPIRPFARGLELSQSRTADVVSLSEDRHTLTLKLAVFDQFSDHVRVIVDASLDDVED 452          
BLAST of mRNA_M-pyrifera_M_contig82982.19384.1 vs. uniprot
Match: M5U0D4_9BACT (FecR protein domain protein n=2 Tax=Rhodopirellula TaxID=265488 RepID=M5U0D4_9BACT)

HSP 1 Score: 397 bits (1020), Expect = 5.070e-134
Identity = 200/271 (73.80%), Postives = 226/271 (83.39%), Query Frame = 1
Query:    4 GLLTATVPDGAEGFRVETPSARVVDLGTAFGIEQSANGVSLVSVFDGEVEIVSRKDSHTHSLTEGKTAHLDADGSLTESDFSVEPFAKLWPTASGITGSTGAFRFIPPWPRRLSRIQSDTEIFVLPEGYAGELKQPCPIDQVESESSESNIPAGQRVRSFLLQFNPVDPTEQDTTNSELGSRMRRIEGSITFDRPVIGLITSSPTLNVTDEVFGLRRGPIPPFKRGLELSNPRTADVVSLSEDRRTLTLKLAVFNQLSDHVRVIVDASLAD 816
            G+LTATVP GAEGFRV+TPSA+VVDLGTAFGI+Q A+G S VSVFDGEVEIV  ++S    L EG++  L  DGS+ +  F+ +PF KLWPTASGI GSTGAFRF PPWPRRLS IQSDTEI VLPEGYA +L  PCP+D  ESE S+S+IP G+RVRS+LLQFNPVDPT Q+  + ELGSRMRRIEGSITFDRPVIG+I SS TLN TDE+F LRRGP  PFKRGLELS PRTADVVSLSEDR T+TL+LAVFNQ SDHVRVIVDASL +
Sbjct:  225 GVLTATVPPGAEGFRVDTPSAQVVDLGTAFGIDQRADGTSTVSVFDGEVEIVRTEESGKRLLIEGESVELHLDGSINDVKFASQPFEKLWPTASGIAGSTGAFRFAPPWPRRLSLIQSDTEIIVLPEGYARKLGSPCPLDMTESERSKSSIPTGRRVRSYLLQFNPVDPTGQEAASKELGSRMRRIEGSITFDRPVIGMIVSSETLNDTDELFSLRRGPARPFKRGLELSQPRTADVVSLSEDRHTVTLELAVFNQFSDHVRVIVDASLGE 495          
BLAST of mRNA_M-pyrifera_M_contig82982.19384.1 vs. uniprot
Match: K5D507_RHOBT (Protein containing FecR protein domain protein n=2 Tax=Rhodopirellula baltica TaxID=265606 RepID=K5D507_RHOBT)

HSP 1 Score: 335 bits (859), Expect = 2.310e-110
Identity = 182/270 (67.41%), Postives = 206/270 (76.30%), Query Frame = 1
Query:    4 GLLTATVPDGAEGFRVETPSARVVDLGTAFGIEQSANGVSLVSVFDGEVEIVSRKDSHTHSLTEGKTAHLDADGSLTESDFSVEPFAKLWPTASGITGSTGAFRFIPPWPRRLSRIQSDTEIFVLPEGYAGELKQPCPIDQVESESSESNIPAGQRVRSFLLQFNPVDPTEQDTTNSELGSRMRRIEGSITFDRPVIGLITSSPTLNVTDEVFGL-RRGPIPPFKRGLELSNPRTADVVSLSEDRRTLTLKLAVFNQLSDHVRVIVDASL 810
            GLLTA+VP GAEGFRV+TPSA+VVDLGTAFGIEQ A+G S VSVFDGEVE+VSRKDS    LTEGKT  L ADGS++E++FS + F KLWP ASGI GSTGAF F P WPR L R++S+T+IFVLPEGY  EL QPCPID+    SSES IP GQRVRSFLLQFN VD   +   N       RRI GSITFDRPV+GLIT + TL  TDE+F L R G +  F RGLEL  P  AD VSLS+DRRTLTL L+V N+L+DHVRVIVDA L
Sbjct:  184 GLLTASVPPGAEGFRVDTPSAQVVDLGTAFGIEQHADGTSKVSVFDGEVEVVSRKDSGKRLLTEGKTIQLAADGSVSEAEFSSQQFEKLWPAASGIAGSTGAFEFAPQWPRMLRRLESNTKIFVLPEGYPRELDQPCPIDRSADGSSESVIPTGQRVRSFLLQFNSVDSGARGPGNGR--PNRRRIGGSITFDRPVLGLITKTETLEATDELFSLDRAGGL--FSRGLELFPPPIADRVSLSDDRRTLTLDLSVVNRLNDHVRVIVDAEL 449          
BLAST of mRNA_M-pyrifera_M_contig82982.19384.1 vs. uniprot
Match: M5UCU4_9BACT (FecR protein domain protein n=1 Tax=Rhodopirellula sallentina SM41 TaxID=1263870 RepID=M5UCU4_9BACT)

HSP 1 Score: 322 bits (824), Expect = 4.090e-105
Identity = 172/269 (63.94%), Postives = 201/269 (74.72%), Query Frame = 1
Query:    4 GLLTATVPDGAEGFRVETPSARVVDLGTAFGIEQSANGVSLVSVFDGEVEIVSRKDSHTHSLTEGKTAHLDADGSLTESDFSVEPFAKLWPTASGITGSTGAFRFIPPWPRRLSRIQSDTEIFVLPEGYAGELKQPCPIDQVESESSESNIPAGQRVRSFLLQFNPVDPTEQDTTNSELGSRMRRIEGSITFDRPVIGLITSSPTLNVTDEVFGLRRGPIPPFKRGLELSNPRTADVVSLSEDRRTLTLKLAVFNQLSDHVRVIVDASL 810
            G+LTATVP+GAEGF+V T SARVVDLGTAFGIEQ+ +G SLVSVFDGEVE++   ++    L++G+   L +DGSL+E++FS + F KLWP ASGI GSTGAF F P WPR L RI+SDT+IFVLPEGY  EL QPCPID+    S+ES IP GQRVRSFLLQFN VD  ++   N+      RRIEGSITFDRPV+GLI  + TL  TDE+F L R     F RGLEL  P  AD VSLSEDRRTLTL L V ++LSDHVRVIVDA L
Sbjct:  181 GVLTATVPEGAEGFQVHTRSARVVDLGTAFGIEQNVDGTSLVSVFDGEVEVIGHNETGKRLLSQGQAIELSSDGSLSETEFSSQQFEKLWPAASGIAGSTGAFEFAPQWPRMLRRIESDTKIFVLPEGYPEELIQPCPIDRSADGSNESAIPTGQRVRSFLLQFNSVDSGQRGPGNNR--RNRRRIEGSITFDRPVLGLIIKTETLEATDELFSLDRAR-GLFGRGLELGPPPIADSVSLSEDRRTLTLDLFVVDRLSDHVRVIVDAEL 446          
BLAST of mRNA_M-pyrifera_M_contig82982.19384.1 vs. uniprot
Match: M5S2P1_9BACT (FecR protein domain protein n=2 Tax=Rhodopirellula europaea TaxID=1263866 RepID=M5S2P1_9BACT)

HSP 1 Score: 281 bits (720), Expect = 6.040e-89
Identity = 149/283 (52.65%), Postives = 190/283 (67.14%), Query Frame = 1
Query:    4 GLLTATVPDGAEGFRVETPSARVVDLGTAFGIEQSANGVSLVSVFDGEVEIVSRKDSHTHSLTEGKTAHLDADGSLTESDFSVEPFAKLWPTASGITGSTGAFRFIPPWPRRLSRIQSDTEIFVLPEGYAGELKQPCPIDQVE-------SESSESNIPAGQRVRSFLLQFNPVDPTEQDTTNSE-LGSRMRRIEGSITFDRPVIGLITSSPTLNVTDEVFGLRRGPIPPFKRGLELSNPRTADVVSLSEDRRTLTLKLAVFNQLSDHVRVIVDASLADFLDQ 828
            GLL+ATVP GAEGFRV+TPSA+V+DLGTAFGIE   +G+S VSVFDGEVE+V+ KD     LTEG++  L +DGS+++  F  + F KLWP +SGI  STGAFRF PPWPR ++RIQSD  +FVLPEGYA  L+ PC +D  E       ++   S+IP  +RVRSFLL FNP    +        L   +  +EGSITF +P++G+I    TL  TD  F LR     PF +GLEL   R +D+++LSEDRRT+ L L  F +  DHVRVIVDAS+  FL +
Sbjct:  205 GLLSATVPPGAEGFRVDTPSAQVIDLGTAFGIELDRDGLSKVSVFDGEVEVVTDKDRQKRLLTEGQSVELSSDGSMSDIAFETQRFEKLWPFSSGIVKSTGAFRFAPPWPRSVNRIQSDRRVFVLPEGYATRLQAPCSVDITEPGKYTKATQLLPSDIPTDRRVRSFLLMFNPEVSADAPINRPRPLIRDLELVEGSITFQQPILGVIVQDKTLFATDGRFSLRSAAGLPFGQGLELDAKRISDIITLSEDRRTIDLSLMSFGRRGDHVRVIVDASIRPFLSR 487          
BLAST of mRNA_M-pyrifera_M_contig82982.19384.1 vs. uniprot
Match: Q7UY36_RHOBA (FecR domain-containing protein n=5 Tax=Rhodopirellula baltica TaxID=265606 RepID=Q7UY36_RHOBA)

HSP 1 Score: 282 bits (721), Expect = 6.110e-89
Identity = 149/280 (53.21%), Postives = 187/280 (66.79%), Query Frame = 1
Query:    4 GLLTATVPDGAEGFRVETPSARVVDLGTAFGIEQSANGVSLVSVFDGEVEIVSRKDSHTHSLTEGKTAHLDADGSLTESDFSVEPFAKLWPTASGITGSTGAFRFIPPWPRRLSRIQSDTEIFVLPEGYAGELKQPCPIDQVE-------SESSESNIPAGQRVRSFLLQFNPVDPTEQDTTNSELGSR-MRRIEGSITFDRPVIGLITSSPTLNVTDEVFGLRRGPIPPFKRGLELSNPRTADVVSLSEDRRTLTLKLAVFNQLSDHVRVIVDASLADF 819
            GLL+ATVP GAEGFRV+TPSA+V+DLGTAFGIE    G+S VSVFDGEVE+V+ KD     LTEG++  L +DGS+++  F  + F KLWP +SGI  STGAFRF PPWPR ++RIQSD  +FVLPEGYA  L+ PC +D  E       ++   S IP  +RVRSFLL FNP  P +  T       R +  +EGSITF +P++G+I    TL  TD  F  R     PF +GLEL   R +D+++LSEDRRT+ L L  F +  DHVRVIVDAS+  F
Sbjct:  218 GLLSATVPPGAEGFRVDTPSAQVIDLGTAFGIELDREGLSKVSVFDGEVEVVTDKDHQKRLLTEGQSLELSSDGSMSDIAFETQRFEKLWPFSSGIVKSTGAFRFAPPWPRLVNRIQSDRRVFVLPEGYATRLQSPCSVDITEPGQYTKATQLLPSVIPTDRRVRSFLLMFNPEVPADAPTNRQRPMIRDLELVEGSITFQQPILGVIVQDKTLFATDGRFSFRSAASLPFGQGLELDAMRISDIITLSEDRRTIDLSLMSFGRRGDHVRVIVDASIRPF 497          
BLAST of mRNA_M-pyrifera_M_contig82982.19384.1 vs. uniprot
Match: A0A0J1B470_RHOIS (Putative transmembrane protein n=1 Tax=Rhodopirellula islandica TaxID=595434 RepID=A0A0J1B470_RHOIS)

HSP 1 Score: 279 bits (714), Expect = 7.440e-88
Identity = 149/277 (53.79%), Postives = 185/277 (66.79%), Query Frame = 1
Query:    4 GLLTATVPDGAEGFRVETPSARVVDLGTAFGIEQSANGVSLVSVFDGEVEIVSRKDSHTHSLTEGKTAHLDADGSLTESDFSVEPFAKLWPTASGITGSTGAFRFIPPWPRRLSRIQSDTEIFVLPEGYAGELKQPCPID-QVESESSES------NIPAGQRVRSFLLQFNPVDPTEQDTTNSELGSR-MRRIEGSITFDRPVIGLITSSPTLNVTDEVFGLRRGPIPPFKRGLELSNPRTADVVSLSEDRRTLTLKLAVFNQLSDHVRVIVDASL 810
            GLL+ATVP GAEGFRV+TPSA+V+DLGTAFGIE   +G+S VSVFDGEVE+V+ KD H   LTEG++  L +DGS+++  F    F KLWP  SGI  STGAFRF PPWPR ++RIQSD  IFVLPEGYA  L+ PC +D  V    +++       +  G RVRSFLL FNP  P + +        R +  +EGSITF +P++G+I    TL  TD  F LR     PF RGLEL   R  DV++LSEDR+T+ L L  F +  DHVRVIVDAS+
Sbjct:  207 GLLSATVPPGAEGFRVDTPSAQVIDLGTAFGIELERDGLSKVSVFDGEVEVVTDKDHHKRLLTEGQSVELSSDGSMSDIAFDTGRFEKLWPFGSGIVKSTGAFRFAPPWPRLVNRIQSDRRIFVLPEGYATRLQSPCSVDLTVPGRYTKAALLLPAEVSTGHRVRSFLLMFNPKIPIDTENNRQRPTIRDLELVEGSITFQQPILGVIVEDKTLFATDGRFSLRSAASLPFGRGLELDASRIGDVITLSEDRQTIDLSLMSFGRRGDHVRVIVDASI 483          
BLAST of mRNA_M-pyrifera_M_contig82982.19384.1 vs. uniprot
Match: A0A2G1WE33_9BACT (Iron dicitrate transport regulator FecR n=1 Tax=Rhodopirellula bahusiensis TaxID=2014065 RepID=A0A2G1WE33_9BACT)

HSP 1 Score: 279 bits (714), Expect = 7.440e-88
Identity = 150/277 (54.15%), Postives = 180/277 (64.98%), Query Frame = 1
Query:    4 GLLTATVPDGAEGFRVETPSARVVDLGTAFGIEQSANGVSLVSVFDGEVEIVSRKDSHTHSLTEGKTAHLDADGSLTESDFSVEPFAKLWPTASGITGSTGAFRFIPPWPRRLSRIQSDTEIFVLPEGYAGELKQPCPID-------QVESESSESNIPAGQRVRSFLLQFNPVDPTEQDTTNSELGSR-MRRIEGSITFDRPVIGLITSSPTLNVTDEVFGLRRGPIPPFKRGLELSNPRTADVVSLSEDRRTLTLKLAVFNQLSDHVRVIVDASL 810
            GLL+ATVP GAEGFRV+TPSA+V+DLGTAFGIE   +G+S VSVFDGEVE+VS        LTEG++  L +DGS+++  F    F KLWP  SGI  STGAFRF P WPR  +RIQSD  IFVLPEGYA  L+ PC +D         E +   S IP  QRVRSFLL FNP    + D     L  R +  +EGSITF  P++G+I    TL  TD  F LR     PF +GLEL   RT D+++LSEDRRT+ L L  F +  DHVRVIVDAS+
Sbjct:  201 GLLSATVPPGAEGFRVDTPSAQVIDLGTAFGIELDRDGLSKVSVFDGEVEVVSDNHRQKRLLTEGESVELSSDGSMSDIAFDTGRFEKLWPYGSGIVKSTGAFRFAPQWPRMANRIQSDRRIFVLPEGYANRLQSPCSVDITDPGNYTTEEQLLNSVIPTDQRVRSFLLMFNPTVTPDPDWNRRRLNIRDLELVEGSITFQHPILGVIVRDKTLFKTDGRFSLRTAVNVPFGQGLELDATRTGDIITLSEDRRTIDLSLMTFGRRGDHVRVIVDASI 477          
BLAST of mRNA_M-pyrifera_M_contig82982.19384.1 vs. uniprot
Match: UPI001E55D9AD (FecR domain-containing protein n=1 Tax=unclassified Blastopirellula TaxID=2647022 RepID=UPI001E55D9AD)

HSP 1 Score: 269 bits (687), Expect = 2.570e-84
Identity = 142/276 (51.45%), Postives = 185/276 (67.03%), Query Frame = 1
Query:    4 GLLTATVPDGAEGFRVETPSARVVDLGTAFGIEQSANGVSLVSVFDGEVEIVSRKDSHTHSLTEGKTAHLDADGSLTESDFSVEPFAKLWPTASGITGSTGAFRFIPPWPRRLSRIQSDTEIFVLPEGYAGELKQPCPID-------QVESESSESNIPAGQRVRSFLLQFNPVDPTEQDTTNSELGSRMRRIEGSITFDRPVIGLITSSPTLNVTDEVFGLRRGPIPPFKRGLELSNPRTADVVSLSEDRRTLTLKLAVFNQLSDHVRVIVDASL 810
            GLLTATVPDGAEGF V TP + ++DLGTAFG+  + +G S+V+VFDGEVE++ + D     L EG++  L++ G++++  FS + F KLWP ASGI  STGAFRF PPWPRRL  I+SD  IFV PEGY   L+ PC ++       + E + +   IPAG RVRSF+LQFNP D  +     S+     +RI+GSITF +P++GLI     L  TD VF LR G +P FKRGLEL+     D + LSEDRRT+ L ++V+  L D +RVIVDASL
Sbjct:  185 GLLTATVPDGAEGFVVTTPQSEIIDLGTAFGVALNEDGSSIVTVFDGEVEVIGKSDEKRR-LVEGESLELNSQGAVSKVAFSPKRFEKLWPAASGIVRSTGAFRFAPPWPRRLDWIESDANIFVFPEGYPVVLEHPCSVNIDAPGRYRRELQLTGGEIPAGTRVRSFILQFNPEDQEDAAAPESD-----KRIQGSITFTKPILGLIVREEELRATDGVFSLRGGRVPQFKRGLELNGSPFGDGIVLSEDRRTVRLDVSVWGPLIDQIRVIVDASL 454          
BLAST of mRNA_M-pyrifera_M_contig82982.19384.1 vs. uniprot
Match: UPI001E5C098A (FecR family protein n=2 Tax=unclassified Rhodopirellula TaxID=2624920 RepID=UPI001E5C098A)

HSP 1 Score: 270 bits (689), Expect = 4.030e-84
Identity = 145/277 (52.35%), Postives = 182/277 (65.70%), Query Frame = 1
Query:    4 GLLTATVPDGAEGFRVETPSARVVDLGTAFGIEQSANGVSLVSVFDGEVEIVSRKDSHTHSLTEGKTAHLDADGSLTESDFSVEPFAKLWPTASGITGSTGAFRFIPPWPRRLSRIQSDTEIFVLPEGYAGELKQPCPID-------QVESESSESNIPAGQRVRSFLLQFNPVDPTEQDTTNSELGSR-MRRIEGSITFDRPVIGLITSSPTLNVTDEVFGLRRGPIPPFKRGLELSNPRTADVVSLSEDRRTLTLKLAVFNQLSDHVRVIVDASL 810
            GLLTATVP GAEGFRV+TPSA+V+DLGTAFGIE   +G+S VSVFDGEVE+V    +    L EG++  L +DGS+ +  F    F +LWP  SGI  S+GAFRF PPWPR++ R+Q+D  +FVLPEGYA  L  PC ID       + ES+ S S IP  QRVRSFLL FNPV P   D     L  R +  IEGSITF  P++G++    TL  +D  F +R     P ++GLEL   R +D ++LS+DRRTL LKLA   +  D VRVIVDA++
Sbjct:  218 GLLTATVPPGAEGFRVDTPSAQVIDLGTAFGIELDRDGLSKVSVFDGEVEVVPEGQTTKRLLIEGESIELQSDGSMNDIAFEPRRFERLWPMVSGIVKSSGAFRFAPPWPRQVKRLQNDEHVFVLPEGYATRLVAPCAIDFSEPGLYENESQLSPSEIPTDQRVRSFLLVFNPVPPKSTDGRPRRLTMRDLEMIEGSITFQHPILGVMVRDETLFQSDGRFSMRSASTVPLQQGLELKPSRLSDSITLSDDRRTLKLKLAGVGRRGDQVRVIVDAAI 494          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82982.19384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E0SN39_9PLAN1.080e-13875.18Iron dicitrate transport regulator FecR n=1 Tax=Pl... [more]
M5U0D4_9BACT5.070e-13473.80FecR protein domain protein n=2 Tax=Rhodopirellula... [more]
K5D507_RHOBT2.310e-11067.41Protein containing FecR protein domain protein n=2... [more]
M5UCU4_9BACT4.090e-10563.94FecR protein domain protein n=1 Tax=Rhodopirellula... [more]
M5S2P1_9BACT6.040e-8952.65FecR protein domain protein n=2 Tax=Rhodopirellula... [more]
Q7UY36_RHOBA6.110e-8953.21FecR domain-containing protein n=5 Tax=Rhodopirell... [more]
A0A0J1B470_RHOIS7.440e-8853.79Putative transmembrane protein n=1 Tax=Rhodopirell... [more]
A0A2G1WE33_9BACT7.440e-8854.15Iron dicitrate transport regulator FecR n=1 Tax=Rh... [more]
UPI001E55D9AD2.570e-8451.45FecR domain-containing protein n=1 Tax=unclassifie... [more]
UPI001E5C098A4.030e-8452.35FecR family protein n=2 Tax=unclassified Rhodopire... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82982contigM-pyrifera_M_contig82982:3..833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score285.8
Seed ortholog evalue2.1e-74
Seed eggNOG ortholog243090.RB908
Hectar predicted targeting categoryother localisation
EggNOG free text desc.iron ion homeostasis
EggNOG OGs2J3SH@203682,COG3712@1,COG3712@2
COG Functional cat.PT
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size831
Cds size831
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816736.5996065-CDS-M-pyrifera_M_contig82982:2..8331622816736.5996065-CDS-M-pyrifera_M_contig82982:2..833Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82982 3..833 +
1692278148.281632-CDS-M-pyrifera_M_contig82982:2..8331692278148.281632-CDS-M-pyrifera_M_contig82982:2..833Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82982 3..833 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82982.19384.1prot_M-pyrifera_M_contig82982.19384.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82982 3..833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82982.19384.1

>prot_M-pyrifera_M_contig82982.19384.1 ID=prot_M-pyrifera_M_contig82982.19384.1|Name=mRNA_M-pyrifera_M_contig82982.19384.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=277bp
TGLLTATVPDGAEGFRVETPSARVVDLGTAFGIEQSANGVSLVSVFDGEV
EIVSRKDSHTHSLTEGKTAHLDADGSLTESDFSVEPFAKLWPTASGITGS
TGAFRFIPPWPRRLSRIQSDTEIFVLPEGYAGELKQPCPIDQVESESSES
NIPAGQRVRSFLLQFNPVDPTEQDTTNSELGSRMRRIEGSITFDRPVIGL
ITSSPTLNVTDEVFGLRRGPIPPFKRGLELSNPRTADVVSLSEDRRTLTL
KLAVFNQLSDHVRVIVDASLADFLDQ*
back to top

mRNA from alignment at M-pyrifera_M_contig82982:3..833+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82982.19384.1 ID=mRNA_M-pyrifera_M_contig82982.19384.1|Name=mRNA_M-pyrifera_M_contig82982.19384.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=831bp|location=Sequence derived from alignment at M-pyrifera_M_contig82982:3..833+ (Macrocystis pyrifera P11B4 male)
ACCGGTTTGTTGACGGCGACGGTACCGGATGGTGCCGAAGGATTCCGAGT CGAGACGCCGTCCGCGCGGGTCGTGGACCTGGGCACAGCGTTCGGGATCG AGCAGAGTGCCAACGGCGTGTCCTTGGTGTCCGTGTTCGATGGGGAGGTT GAGATTGTCAGCCGGAAGGACAGCCACACGCACTCACTGACGGAGGGCAA GACCGCACATCTCGATGCGGATGGCAGCTTGACGGAATCAGACTTTTCAG TGGAGCCGTTTGCAAAGCTCTGGCCAACGGCATCAGGGATCACGGGCTCG ACGGGTGCGTTTCGATTCATTCCTCCTTGGCCGCGTCGATTGAGCCGGAT CCAGAGCGACACCGAAATTTTTGTGCTGCCCGAAGGCTACGCAGGCGAGC TGAAACAACCCTGCCCGATCGACCAAGTGGAATCGGAATCATCCGAGTCC AACATTCCGGCTGGCCAGCGGGTGCGTTCGTTCCTATTGCAATTCAATCC CGTCGATCCGACCGAACAAGACACAACCAACAGCGAACTTGGCAGCAGGA TGCGGCGAATCGAAGGCAGCATCACATTCGATCGTCCCGTGATTGGACTG ATCACGAGCAGCCCCACGTTGAACGTCACGGATGAGGTTTTCGGCTTACG CAGAGGCCCCATCCCACCGTTCAAGCGTGGCCTGGAATTGAGCAATCCAC GCACCGCTGATGTCGTTTCGTTGAGCGAAGACCGTCGAACGCTGACGCTG AAATTGGCGGTCTTCAACCAACTCAGTGACCACGTGCGAGTGATCGTCGA CGCCTCGCTCGCTGACTTCCTCGACCAATGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig82982:3..833+

>mRNA_M-pyrifera_M_contig82982.19384.1 ID=mRNA_M-pyrifera_M_contig82982.19384.1|Name=mRNA_M-pyrifera_M_contig82982.19384.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1662bp|location=Sequence derived from alignment at M-pyrifera_M_contig82982:3..833+ (Macrocystis pyrifera P11B4 male)
ACCGGTTTGTTGACGGCGACGGTACCGGATGGTGCCGAAGGATTCCGAGT
CGAGACGCCGTCCGCGCGGGTCGTGGACCTGGGCACAGCGTTCGGGATCG
AGCAGAGTGCCAACGGCGTGTCCTTGGTGTCCGTGTTCGATGGGGAGGTT
GAGATTGTCAGCCGGAAGGACAGCCACACGCACTCACTGACGGAGGGCAA
GACCGCACATCTCGATGCGGATGGCAGCTTGACGGAATCAGACTTTTCAG
TGGAGCCGTTTGCAAAGCTCTGGCCAACGGCATCAGGGATCACGGGCTCG
ACGGGTGCGTTTCGATTCATTCCTCCTTGGCCGCGTCGATTGAGCCGGAT
CCAGAGCGACACCGAAATTTTTGTGCTGCCCGAAGGCTACGCAGGCGAGC
TGAAACAACCCTGCCCGATCGACCAAGTGGAATCGGAATCATCCGAGTCC
AACATTCCGGCTGGCCAGCGGGTGCGTTCGTTCCTATTGCAATTCAATCC
CGTCGATCCGACCGAACAAGACACAACCAACAGCGAACTTGGCAGCAGGA
TGCGGCGAATCGAAGGCAGCATCACATTCGATCGTCCCGTGATTGGACTG
ATCACGAGCAGCCCCACGTTGAACGTCACGGATGAGGTTTTCGGCTTACG
CAGAGGCCCCATCCCACCGTTCAAGCGTGGCCTGGAATTGAGCAATCCAC
GCACCGCTGATGTCGTTTCGTTGAGCGAAGACCGTCGAACGCTGACGCTG
AAATTGGCGGTCTTCAACCAACTCAGTGACCACGTGCGAGTGATCGTCGA
CGCCTCGCTCGCTGACTTCCTCGACCAATGAACCGGTTTGTTGACGGCGA
CGGTACCGGATGGTGCCGAAGGATTCCGAGTCGAGACGCCGTCCGCGCGG
GTCGTGGACCTGGGCACAGCGTTCGGGATCGAGCAGAGTGCCAACGGCGT
GTCCTTGGTGTCCGTGTTCGATGGGGAGGTTGAGATTGTCAGCCGGAAGG
ACAGCCACACGCACTCACTGACGGAGGGCAAGACCGCACATCTCGATGCG
GATGGCAGCTTGACGGAATCAGACTTTTCAGTGGAGCCGTTTGCAAAGCT
CTGGCCAACGGCATCAGGGATCACGGGCTCGACGGGTGCGTTTCGATTCA
TTCCTCCTTGGCCGCGTCGATTGAGCCGGATCCAGAGCGACACCGAAATT
TTTGTGCTGCCCGAAGGCTACGCAGGCGAGCTGAAACAACCCTGCCCGAT
CGACCAAGTGGAATCGGAATCATCCGAGTCCAACATTCCGGCTGGCCAGC
GGGTGCGTTCGTTCCTATTGCAATTCAATCCCGTCGATCCGACCGAACAA
GACACAACCAACAGCGAACTTGGCAGCAGGATGCGGCGAATCGAAGGCAG
CATCACATTCGATCGTCCCGTGATTGGACTGATCACGAGCAGCCCCACGT
TGAACGTCACGGATGAGGTTTTCGGCTTACGCAGAGGCCCCATCCCACCG
TTCAAGCGTGGCCTGGAATTGAGCAATCCACGCACCGCTGATGTCGTTTC
GTTGAGCGAAGACCGTCGAACGCTGACGCTGAAATTGGCGGTCTTCAACC
AACTCAGTGACCACGTGCGAGTGATCGTCGACGCCTCGCTCGCTGACTTC
CTCGACCAATGA
back to top