mRNA_M-pyrifera_M_contig82968.19380.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82968.19380.1
Unique NamemRNA_M-pyrifera_M_contig82968.19380.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82968.19380.1 vs. uniprot
Match: A0A835ZIS5_9STRA (N2227-like protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIS5_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.920e-14
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 1
Query:   13 KYVATIRRALRPGGVWINCGPLHWHNQSALALSLDEMLALVAGSGFQLEVVERLPACAYRVEDGGGSLRVDEFKPVFWVAILGKAAAA 276
            +YVA +  ALR GGVW+N GPLH+H +S +  S DE+ A++  +GF++    +LP C YR  +   S   ++F+P+ W A L +   +
Sbjct:  443 EYVAALTHALRRGGVWVNLGPLHFHRESRVVASADELTAVLREAGFEVLRAAQLPPCEYRRGEPD-STATEQFRPLLWAARLTRGGGS 529          
BLAST of mRNA_M-pyrifera_M_contig82968.19380.1 vs. uniprot
Match: UPI0015C2CF64 (uncharacterized protein n=1 Tax=Lasiodiplodia theobromae TaxID=45133 RepID=UPI0015C2CF64)

HSP 1 Score: 61.6 bits (148), Expect = 4.980e-9
Identity = 33/73 (45.21%), Postives = 44/73 (60.27%), Query Frame = 1
Query:   16 YVATIRRALRPGGVWINCGPLHWHNQSALALSLDEMLALVAGSGFQL-----EVVERLPACAYRVEDGGGSLR 219
            Y+ +I   LRPGGVW+N GPL W   + L LSLDE++AL  G GF+      +VVE L  C   V +G G ++
Sbjct:  392 YLHSIHALLRPGGVWVNAGPLLWGTGARLQLSLDEVVALAEGVGFEFVERRGDVVEGL--CGGEVGEGEGMIQ 462          
BLAST of mRNA_M-pyrifera_M_contig82968.19380.1 vs. uniprot
Match: A0A0F7SLH3_PHARH (Putative trehalase n=1 Tax=Phaffia rhodozyma TaxID=264483 RepID=A0A0F7SLH3_PHARH)

HSP 1 Score: 60.5 bits (145), Expect = 1.260e-8
Identity = 30/62 (48.39%), Postives = 42/62 (67.74%), Query Frame = 1
Query:   13 KYVATIRRALRPGGVWINCGPL--HWHNQSA----LALSLDEMLALVAGSGFQLEVVERLPA 180
            +Y+ TI R L+PGG+WIN GPL  HW N S+    + LSLDE+ ALVA  GF+++    +P+
Sbjct:  378 EYLETIYRVLKPGGIWINLGPLLWHWENNSSKDVSVELSLDEVKALVAEVGFEIKEESTVPS 439          
BLAST of mRNA_M-pyrifera_M_contig82968.19380.1 vs. uniprot
Match: A0A120E5Y0_9BASI (N2227-like protein (Fragment) n=1 Tax=Rhodotorula sp. JG-1b TaxID=1305733 RepID=A0A120E5Y0_9BASI)

HSP 1 Score: 59.7 bits (143), Expect = 1.350e-8
Identity = 29/79 (36.71%), Postives = 44/79 (55.70%), Query Frame = 1
Query:   16 YVATIRRALRPGGVWINCGPLHWHNQSALALSLDEMLALVAGSGFQLEVVERLPACAYRVEDGGGSLRVDEFKPVFWVA 252
            Y+ T+   L+PGGVWIN GPL W+   A+ L L ++L L    GF++EV + +    Y  ++ G +     +   FWVA
Sbjct:  161 YLETLYALLKPGGVWINLGPLLWYGNPAMELPLKDVLQLAQLVGFEIEVQKEIKEARYTADEEGKAPFA--YDCAFWVA 237          
BLAST of mRNA_M-pyrifera_M_contig82968.19380.1 vs. uniprot
Match: A0A438MXI2_EXOME (Uncharacterized protein n=1 Tax=Exophiala mesophila TaxID=212818 RepID=A0A438MXI2_EXOME)

HSP 1 Score: 59.3 bits (142), Expect = 2.280e-8
Identity = 35/96 (36.46%), Postives = 45/96 (46.88%), Query Frame = 1
Query:    1 RSTRKYVATIRRALRPGGVWINCGPLHWHNQSALALSLDEMLALVAGSGFQL---------EVVERLPACAYRVEDGGGSLRVDE--FKPVFWVAI 255
            R+   Y+  I R LRPGG W+N GPL W   + L LSLDE++ L    GF           E +  L   +     G  S  + E  +K  FWVAI
Sbjct:  173 RNVLSYMENIHRLLRPGGAWVNLGPLLWSYNAELQLSLDEVVRLAEAMGFDFLETSPGFGPETIPGLKVRSIHAPYGYNSRALSENAYKAQFWVAI 268          
BLAST of mRNA_M-pyrifera_M_contig82968.19380.1 vs. uniprot
Match: A0A0D2FBS7_9EURO (Uncharacterized protein n=1 Tax=Rhinocladiella mackenziei CBS 650.93 TaxID=1442369 RepID=A0A0D2FBS7_9EURO)

HSP 1 Score: 59.3 bits (142), Expect = 3.210e-8
Identity = 35/95 (36.84%), Postives = 47/95 (49.47%), Query Frame = 1
Query:    1 RSTRKYVATIRRALRPGGVWINCGPLHWHNQSALALSLDEMLALVAGSGFQL---------EVVERLPACAYRVEDGGGSLRVDE--FKPVFWVA 252
            R+   YV TIRR L+PGGVWIN GPL W   + L LSL+E++ +    GF           + +  LP  +     G     + E  +K  FWVA
Sbjct:  360 RNVLSYVNTIRRVLKPGGVWINFGPLLWSYNTQLKLSLEEIVTISEAVGFDFLETNDSFGPKTLGHLPVRSIHAPYGFNQRALTENAYKAQFWVA 454          
BLAST of mRNA_M-pyrifera_M_contig82968.19380.1 vs. uniprot
Match: A0A0D6EI36_SPOSA (SPOSA6832_01221-mRNA-1:cds (Fragment) n=1 Tax=Sporidiobolus salmonicolor TaxID=5005 RepID=A0A0D6EI36_SPOSA)

HSP 1 Score: 58.9 bits (141), Expect = 4.150e-8
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 1
Query:   13 KYVATIRRALRPGGVWINCGPLHWH-----NQSALALSLDEMLALVAGSGFQLEVVERLPACAYRVEDGGGSLRVDEFKPVFWVAILGKAAAA 276
            +Y+ TI   L+PGG+WINCGP  WH     + S++ L+LD++ AL    GF+L   ER    +Y       SL   E+   FWVA   +  AA
Sbjct:  269 QYLETIWGLLKPGGMWINCGPTLWHFENDHDASSIELTLDDVKALARRIGFELSE-EREITTSYTTNPR--SLLKHEYTAAFWVARKVEGTAA 358          
BLAST of mRNA_M-pyrifera_M_contig82968.19380.1 vs. uniprot
Match: A0A4V5ND58_9BASI (Uncharacterized protein n=1 Tax=Rhodotorula sp. CCFEE 5036 TaxID=1965284 RepID=A0A4V5ND58_9BASI)

HSP 1 Score: 58.5 bits (140), Expect = 5.900e-8
Identity = 29/79 (36.71%), Postives = 43/79 (54.43%), Query Frame = 1
Query:   16 YVATIRRALRPGGVWINCGPLHWHNQSALALSLDEMLALVAGSGFQLEVVERLPACAYRVEDGGGSLRVDEFKPVFWVA 252
            Y+ T+   L+PGGVWIN GPL W+   A+ L L ++L L    GF++E    + A  Y  ++ G  +    +   FWVA
Sbjct:  329 YLETLYGLLKPGGVWINLGPLLWYGNPAMELPLKDVLHLAQLVGFKIERQSEIKAARYTADEEG--MYTFAYDCAFWVA 405          
BLAST of mRNA_M-pyrifera_M_contig82968.19380.1 vs. uniprot
Match: A0A1Z5JBY6_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JBY6_FISSO)

HSP 1 Score: 57.8 bits (138), Expect = 1.100e-7
Identity = 32/85 (37.65%), Postives = 50/85 (58.82%), Query Frame = 1
Query:   13 KYVATIRRALRP-GGVWINCGPLHWHNQSALALSLDEMLALVAGSGFQL-EVVERLPACAYRVEDG-GGSLRVDEFKPVFWVAIL 258
            +Y+A I + L+P GG+W+N GPL WH +S + LS DE+ +L+   GF++ E    +    YR  D    S   D + P+ +VA+L
Sbjct:  332 EYIAMITKLLKPKGGMWVNVGPLQWHQKSLIRLSADELYSLIEEVGFKIMEWGVDVAPIEYRSSDKLVRSTHYDAYCPLRFVAVL 416          
BLAST of mRNA_M-pyrifera_M_contig82968.19380.1 vs. uniprot
Match: W7DR22_COCVI (Uncharacterized protein n=1 Tax=Bipolaris victoriae FI3 TaxID=930091 RepID=W7DR22_COCVI)

HSP 1 Score: 57.8 bits (138), Expect = 1.110e-7
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1
Query:   16 YVATIRRALRPGGVWINCGPLHWHNQSALALSLDEMLALVAGSGFQLEVVER 171
            +++ I R L+PGGVWIN GPL WH+ S L LS +E+L L    GF +++  R
Sbjct:  340 FLSNIHRLLKPGGVWINLGPLKWHSFSELHLSAEEVLKLADLLGFDVDISSR 391          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82968.19380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZIS5_9STRA4.920e-1438.64N2227-like protein-domain-containing protein n=1 T... [more]
UPI0015C2CF644.980e-945.21uncharacterized protein n=1 Tax=Lasiodiplodia theo... [more]
A0A0F7SLH3_PHARH1.260e-848.39Putative trehalase n=1 Tax=Phaffia rhodozyma TaxID... [more]
A0A120E5Y0_9BASI1.350e-836.71N2227-like protein (Fragment) n=1 Tax=Rhodotorula ... [more]
A0A438MXI2_EXOME2.280e-836.46Uncharacterized protein n=1 Tax=Exophiala mesophil... [more]
A0A0D2FBS7_9EURO3.210e-836.84Uncharacterized protein n=1 Tax=Rhinocladiella mac... [more]
A0A0D6EI36_SPOSA4.150e-838.71SPOSA6832_01221-mRNA-1:cds (Fragment) n=1 Tax=Spor... [more]
A0A4V5ND58_9BASI5.900e-836.71Uncharacterized protein n=1 Tax=Rhodotorula sp. CC... [more]
A0A1Z5JBY6_FISSO1.100e-737.65Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
W7DR22_COCVI1.110e-748.08Uncharacterized protein n=1 Tax=Bipolaris victoria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82968contigM-pyrifera_M_contig82968:327..608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog159749.K0SW67
KEGG rclassRC00003,RC00333
KEGG koko:K19787
KEGG ReactionR02144
KEGG Pathwayko00340,map00340
Hectar predicted targeting categoryother localisation
EggNOG free text desc.N2227
EggNOG OGs2XCRM@2836,KOG2798@1,KOG2798@2759
EC2.1.1.22
COG Functional cat.G
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size282
Cds size282
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816736.2764373-CDS-M-pyrifera_M_contig82968:326..6081622816736.2764373-CDS-M-pyrifera_M_contig82968:326..608Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82968 327..608 -
1692278148.045567-CDS-M-pyrifera_M_contig82968:326..6081692278148.045567-CDS-M-pyrifera_M_contig82968:326..608Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82968 327..608 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82968.19380.1prot_M-pyrifera_M_contig82968.19380.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82968 327..608 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82968.19380.1

>prot_M-pyrifera_M_contig82968.19380.1 ID=prot_M-pyrifera_M_contig82968.19380.1|Name=mRNA_M-pyrifera_M_contig82968.19380.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
RSTRKYVATIRRALRPGGVWINCGPLHWHNQSALALSLDEMLALVAGSGF
QLEVVERLPACAYRVEDGGGSLRVDEFKPVFWVAILGKAAAAR*
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mRNA from alignment at M-pyrifera_M_contig82968:327..608-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82968.19380.1 ID=mRNA_M-pyrifera_M_contig82968.19380.1|Name=mRNA_M-pyrifera_M_contig82968.19380.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig82968:327..608- (Macrocystis pyrifera P11B4 male)
CGGTCAACCCGTAAGTACGTTGCAACGATCCGCCGCGCACTGCGGCCCGG TGGGGTGTGGATCAACTGCGGCCCCCTGCACTGGCACAACCAATCGGCGC TTGCTCTGAGCCTCGACGAGATGCTCGCTCTCGTAGCCGGGTCGGGCTTC CAGCTCGAGGTGGTGGAGCGGCTGCCTGCTTGCGCGTACAGAGTGGAGGA TGGCGGGGGATCGCTGAGGGTGGACGAGTTCAAGCCAGTGTTTTGGGTTG CCATCTTGGGAAAGGCGGCAGCGGCGAGATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82968:327..608-

>mRNA_M-pyrifera_M_contig82968.19380.1 ID=mRNA_M-pyrifera_M_contig82968.19380.1|Name=mRNA_M-pyrifera_M_contig82968.19380.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig82968:327..608- (Macrocystis pyrifera P11B4 male)
CGGTCAACCCGTAAGTACGTTGCAACGATCCGCCGCGCACTGCGGCCCGG
TGGGGTGTGGATCAACTGCGGCCCCCTGCACTGGCACAACCAATCGGCGC
TTGCTCTGAGCCTCGACGAGATGCTCGCTCTCGTAGCCGGGTCGGGCTTC
CAGCTCGAGGTGGTGGAGCGGCTGCCTGCTTGCGCGTACAGAGTGGAGGA
TGGCGGGGGATCGCTGAGGGTGGACGAGTTCAAGCCAGTGTTTTGGGTTG
CCATCTTGGGAAAGGCGGCAGCGGCGAGATAACGGTCAACCCGTAAGTAC
GTTGCAACGATCCGCCGCGCACTGCGGCCCGGTGGGGTGTGGATCAACTG
CGGCCCCCTGCACTGGCACAACCAATCGGCGCTTGCTCTGAGCCTCGACG
AGATGCTCGCTCTCGTAGCCGGGTCGGGCTTCCAGCTCGAGGTGGTGGAG
CGGCTGCCTGCTTGCGCGTACAGAGTGGAGGATGGCGGGGGATCGCTGAG
GGTGGACGAGTTCAAGCCAGTGTTTTGGGTTGCCATCTTGGGAAAGGCGG
CAGCGGCGAGATAA
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