mRNA_M-pyrifera_M_contig82938.19377.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82938.19377.1
Unique NamemRNA_M-pyrifera_M_contig82938.19377.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82938.19377.1 vs. uniprot
Match: UPI000854F5AC (LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 4-like n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI000854F5AC)

HSP 1 Score: 197 bits (502), Expect = 3.930e-58
Identity = 101/184 (54.89%), Postives = 123/184 (66.85%), Query Frame = 1
Query:   43 GICGLHNLGNTCFMNSAVQCLRATWPLASYMLQGREKVDLNRSNPLGTGGVMAMEFAHLVRLALAPSCPGVLAPRGVRVAAARARSEFAGFAQQDAHELLSFVLDGLHEDLNRVTKKPATEAPEGRGRPDAEVAKEAWDTYLERNKSVIVDHFSGLLKSVLTCPSCGNVSKTFDPFNSLALPIP 594
            G+CGL NLGNTCFMNSA+QCL  T PL  Y L    K ++N+ NPLG  G +AM +A L+R   +      +APR  +    R   +F+G+ QQD+ ELL+F+LDGLHEDLNRV KKP  E  +  GRPD+ VAKEAWD +L RN S+IVD F GL KS L CP C  VS TFDPF  L LP+P
Sbjct:   19 GLCGLSNLGNTCFMNSALQCLSNTPPLTEYFLSDDYKEEINKENPLGMKGEIAMAYAELIRQIWSGE-HSYVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDADGRPDSVVAKEAWDNHLRRNYSIIVDIFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLP 201          
BLAST of mRNA_M-pyrifera_M_contig82938.19377.1 vs. uniprot
Match: A0A2G9RJ31_LITCT (Ubiquitinyl hydrolase 1 (Fragment) n=2 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9RJ31_LITCT)

HSP 1 Score: 198 bits (503), Expect = 6.910e-58
Identity = 101/184 (54.89%), Postives = 123/184 (66.85%), Query Frame = 1
Query:   43 GICGLHNLGNTCFMNSAVQCLRATWPLASYMLQGREKVDLNRSNPLGTGGVMAMEFAHLVRLALAPSCPGVLAPRGVRVAAARARSEFAGFAQQDAHELLSFVLDGLHEDLNRVTKKPATEAPEGRGRPDAEVAKEAWDTYLERNKSVIVDHFSGLLKSVLTCPSCGNVSKTFDPFNSLALPIP 594
            G+CGL NLGNTCFMNSA+QCL  T PL  Y L    K ++N+ NPLG  G +AM +A L+R   +      +APR  +    R   +F+G+ QQD+ ELL+F+LDGLHEDLNRV KKP  E  +  GRPD+ VAKEAWD +L RN S+IVD F GL KS L CP C  VS TFDPF  L LP+P
Sbjct:  100 GLCGLSNLGNTCFMNSALQCLSNTPPLTEYFLTDDYKEEINKENPLGMKGEIAMAYAELIRQIWSGE-HSYVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDADGRPDSVVAKEAWDNHLRRNNSIIVDIFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLP 282          
BLAST of mRNA_M-pyrifera_M_contig82938.19377.1 vs. uniprot
Match: A0A8C9GLB3_9PRIM (USP domain-containing protein n=1 Tax=Piliocolobus tephrosceles TaxID=591936 RepID=A0A8C9GLB3_9PRIM)

HSP 1 Score: 193 bits (491), Expect = 3.000e-57
Identity = 101/186 (54.30%), Postives = 123/186 (66.13%), Query Frame = 1
Query:   43 GICGLHNLGNTCFMNSAVQCLRATWPLASYMLQGREKVDLNRSNPLGTGGVMAMEFAHLVRLALAPSCPGVLAPRGVRVAAARARSEFAGFAQQDAHELLSFVLDGLHEDLNRVTKKPATEAPEGRGRPDAEVAKEAWDTYLERNKSVIVDHFSGLLKSVLTCPSCGNVSKTFDPFNSLALPIPPK 600
            G+CGL NLGNTCFMNSA+QCL  T PL  Y L+   + ++NR NPLG  G +A  +A L++   +     V APR  +    R   +F+G+ QQD+ ELL+F+LDGLHEDLNRV KKP  E  +  GRPDA VAKEAW+ +  RN SVIVD F GL KS L CP C  VS TFDPF  L LP+P K
Sbjct:   35 GLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHV-APRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLK 219          
BLAST of mRNA_M-pyrifera_M_contig82938.19377.1 vs. uniprot
Match: I0YQZ0_COCSC (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YQZ0_COCSC)

HSP 1 Score: 193 bits (491), Expect = 4.090e-57
Identity = 100/184 (54.35%), Postives = 121/184 (65.76%), Query Frame = 1
Query:   43 GICGLHNLGNTCFMNSAVQCLRATWPLASYMLQGREKVDLNRSNPLGTGGVMAMEFAHLVRLALAPSCPGVLAPRGVRVAAARARSEFAGFAQQDAHELLSFVLDGLHEDLNRVTKKPATEAPEGRGRPDAEVAKEAWDTYLERNKSVIVDHFSGLLKSVLTCPSCGNVSKTFDPFNSLALPIP 594
            G+ GL NLGNTCFMNS+VQCL    PL    L G  K DLN  NPLG  G +A  F  L++L L     G ++P+G + A AR   +F G++QQD+ ELL+F+LDGLHEDLNRV +KP  E  +  GRPD  VA EAWD Y +RN SV+VDHF GL KS L CP C   S  FDPF  L+LP+P
Sbjct:    1 GLAGLSNLGNTCFMNSSVQCLAHAAPLVRVFLTGAYKRDLNPDNPLGNKGELAEAFGSLMKL-LWQGGVGSVSPKGFKAALARFAPQFGGYSQQDSQELLAFLLDGLHEDLNRVRQKPYVEEADAEGRPDKVVAAEAWDNYRKRNDSVVVDHFQGLYKSTLVCPQCSFSSVKFDPFMYLSLPLP 183          
BLAST of mRNA_M-pyrifera_M_contig82938.19377.1 vs. uniprot
Match: A0A2G9P1R3_LITCT (USP domain-containing protein (Fragment) n=2 Tax=Tetrapoda TaxID=32523 RepID=A0A2G9P1R3_LITCT)

HSP 1 Score: 189 bits (480), Expect = 4.690e-57
Identity = 94/186 (50.54%), Postives = 121/186 (65.05%), Query Frame = 1
Query:   43 GICGLHNLGNTCFMNSAVQCLRATWPLASYMLQGREKVDLNRSNPLGTGGVMAMEFAHLVRLALAPSCPGVLAPRGVRVAAARARSEFAGFAQQDAHELLSFVLDGLHEDLNRVTKKPATEAPEGRGRPDAEVAKEAWDTYLERNKSVIVDHFSGLLKSVLTCPSCGNVSKTFDPFNSLALPIPPK 600
            G+CGL NLGNTCFMNSA+QCL  T PL  Y L  + + +LN  NPLG  G +A  +A L++   +     V  PR  +    R   +F+G+ QQD  ELL+F+LDGLHEDLNR+ KKP  +  +  GRPD  VA+EAW+ +++RN S+IVD F GL KS L CP C  +S TFDPF  L LP+P K
Sbjct:   44 GLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQDELNLDNPLGMRGEIAKSYAELIKQMWSGKYSYVT-PRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDAEGRPDEVVAEEAWENHIKRNDSIIVDIFHGLFKSTLVCPECSKISVTFDPFCYLTLPLPMK 228          
BLAST of mRNA_M-pyrifera_M_contig82938.19377.1 vs. uniprot
Match: A0A2Y9QTH3_TRIMA (Ubiquitinyl hydrolase 1 n=2 Tax=Eutheria TaxID=9347 RepID=A0A2Y9QTH3_TRIMA)

HSP 1 Score: 195 bits (495), Expect = 2.230e-56
Identity = 102/186 (54.84%), Postives = 124/186 (66.67%), Query Frame = 1
Query:   43 GICGLHNLGNTCFMNSAVQCLRATWPLASYMLQGREKVDLNRSNPLGTGGVMAMEFAHLVRLALAPSCPGVLAPRGVRVAAARARSEFAGFAQQDAHELLSFVLDGLHEDLNRVTKKPATEAPEGRGRPDAEVAKEAWDTYLERNKSVIVDHFSGLLKSVLTCPSCGNVSKTFDPFNSLALPIPPK 600
            G+CGL NLGNTCFMNSA+QCL  T PL  Y L+   +V++NR NPLG  G +A  +A L++   +     V APR  +    R   +F+G+ QQD+ ELL+F+LDGLHEDLNRV KKP  E  +  GRPDA VAKEAW+ +  RN SVIVD F GL KS L CP C  VS TFDPF  L LP+P K
Sbjct:  300 GLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEVEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHV-APRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLK 484          
BLAST of mRNA_M-pyrifera_M_contig82938.19377.1 vs. uniprot
Match: A0A8J0V3P2_XENLA (Ubiquitinyl hydrolase 1 n=1 Tax=Xenopus laevis TaxID=8355 RepID=A0A8J0V3P2_XENLA)

HSP 1 Score: 196 bits (498), Expect = 3.140e-56
Identity = 101/186 (54.30%), Postives = 123/186 (66.13%), Query Frame = 1
Query:   43 GICGLHNLGNTCFMNSAVQCLRATWPLASYMLQGREKVDLNRSNPLGTGGVMAMEFAHLVRLALAPSCPGVLAPRGVRVAAARARSEFAGFAQQDAHELLSFVLDGLHEDLNRVTKKPATEAPEGRGRPDAEVAKEAWDTYLERNKSVIVDHFSGLLKSVLTCPSCGNVSKTFDPFNSLALPIPPK 600
            G+CGL NLGNTCFMNSA+QCL  T PL  Y L    K ++NR NPLG  G +A+ +A L+R   +      +APR  +    R   +F+G+ QQD+ ELL+F+LDGLHEDLNRV KKP  E  +  GRPD+ VA EAWD +L RN S+IVD F GL KS L CP C  VS TFDPF  L LP+P K
Sbjct:  319 GLCGLSNLGNTCFMNSALQCLSNTPPLTRYFLMDEYKKEINRENPLGMKGEIAVAYAELIRQIWSGE-HSYMAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDSIVATEAWDNHLRRNYSIIVDIFHGLFKSTLVCPECHKVSVTFDPFCYLTLPLPMK 503          
BLAST of mRNA_M-pyrifera_M_contig82938.19377.1 vs. uniprot
Match: A0A224ZBD9_9ACAR (Ubiquitinyl hydrolase 1 n=1 Tax=Rhipicephalus zambeziensis TaxID=60191 RepID=A0A224ZBD9_9ACAR)

HSP 1 Score: 196 bits (498), Expect = 3.910e-56
Identity = 99/186 (53.23%), Postives = 126/186 (67.74%), Query Frame = 1
Query:   43 GICGLHNLGNTCFMNSAVQCLRATWPLASYMLQGREKVDLNRSNPLGTGGVMAMEFAHLVRLALAPSCPGVLAPRGVRVAAARARSEFAGFAQQDAHELLSFVLDGLHEDLNRVTKKPATEAPEGRGRPDAEVAKEAWDTYLERNKSVIVDHFSGLLKSVLTCPSCGNVSKTFDPFNSLALPIPPK 600
            G+CGL N+GNTCFMNSA+QC+  T PL  Y +  R   +LN SNPLG  G +A  +A L+++  + +C  V+ PR  ++A  R   +F+GF QQD  EL++F+LDGLHEDLNRV  KP  E  +  GRPD  VA+EAW  YL RN S+IVD F GLLKS L CP C  +S TFDPF  L+LP+P K
Sbjct:  282 GLCGLGNIGNTCFMNSALQCMSNTPPLTEYFMTDRYLSELNDSNPLGMRGEIAKSYADLIKVMWSGNCSSVI-PRPFKMAVGRFAPQFSGFQQQDCQELMAFLLDGLHEDLNRVINKPYIELKDSDGRPDEVVAQEAWHNYLLRNNSIIVDIFHGLLKSTLVCPDCHKLSVTFDPFCYLSLPLPYK 466          
BLAST of mRNA_M-pyrifera_M_contig82938.19377.1 vs. uniprot
Match: A0A2F0AUB7_ESCRO (Ubiquitin carboxyl-terminal hydrolase 15 (Fragment) n=1 Tax=Eschrichtius robustus TaxID=9764 RepID=A0A2F0AUB7_ESCRO)

HSP 1 Score: 189 bits (480), Expect = 4.900e-56
Identity = 95/186 (51.08%), Postives = 121/186 (65.05%), Query Frame = 1
Query:   43 GICGLHNLGNTCFMNSAVQCLRATWPLASYMLQGREKVDLNRSNPLGTGGVMAMEFAHLVRLALAPSCPGVLAPRGVRVAAARARSEFAGFAQQDAHELLSFVLDGLHEDLNRVTKKPATEAPEGRGRPDAEVAKEAWDTYLERNKSVIVDHFSGLLKSVLTCPSCGNVSKTFDPFNSLALPIPPK 600
            G+CGL NLGNTCFMNSA+QCL  T PL  Y L  + + +LN  NPLG  G +A  +A L++   +     V  PR  +    R   +F+G+ QQD  ELL+F+LDGLHEDLNR+ KKP  +  +  GRPD  VA+EAW+ +L+RN S+IVD F GL KS L CP C  +S TFDPF  L LP+P K
Sbjct:   30 GLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVT-PRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMK 214          
BLAST of mRNA_M-pyrifera_M_contig82938.19377.1 vs. uniprot
Match: A0A2L2XYN7_PARTP (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2XYN7_PARTP)

HSP 1 Score: 199 bits (507), Expect = 6.880e-56
Identity = 101/188 (53.72%), Postives = 126/188 (67.02%), Query Frame = 1
Query:   37 RGGICGLHNLGNTCFMNSAVQCLRATWPLASYMLQGREKVDLNRSNPLGTGGVMAMEFAHLVRLALAPSCPGVLAPRGVRVAAARARSEFAGFAQQDAHELLSFVLDGLHEDLNRVTKKPATEAPEGRGRPDAEVAKEAWDTYLERNKSVIVDHFSGLLKSVLTCPSCGNVSKTFDPFNSLALPIPPK 600
            + G+CGL NLGNTCFMNSA+QC+  T PLA Y LQ     +LN  NPLG  G +A  F  L++   + +C   + PR  ++   R   +F+G+ QQD  EL++F+LDGLHEDLNRV KKP  E  +  GRPD  VAKEAW+ YL+RN S+IVD F GLLKS L CP C  VS TFDPF  L+LP+P K
Sbjct:  285 QAGLCGLSNLGNTCFMNSALQCMSNTPPLADYFLQDHYWNELNNDNPLGMQGEIAKSFGDLIKNMWSGNCSYTV-PRNFKMIVGRFAPQFSGYQQQDCQELMAFLLDGLHEDLNRVKKKPYIELSDADGRPDELVAKEAWENYLKRNNSIIVDTFHGLLKSTLVCPECNKVSVTFDPFCYLSLPLPLK 471          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82938.19377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000854F5AC3.930e-5854.89LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal h... [more]
A0A2G9RJ31_LITCT6.910e-5854.89Ubiquitinyl hydrolase 1 (Fragment) n=2 Tax=Lithoba... [more]
A0A8C9GLB3_9PRIM3.000e-5754.30USP domain-containing protein n=1 Tax=Piliocolobus... [more]
I0YQZ0_COCSC4.090e-5754.35Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]
A0A2G9P1R3_LITCT4.690e-5750.54USP domain-containing protein (Fragment) n=2 Tax=T... [more]
A0A2Y9QTH3_TRIMA2.230e-5654.84Ubiquitinyl hydrolase 1 n=2 Tax=Eutheria TaxID=934... [more]
A0A8J0V3P2_XENLA3.140e-5654.30Ubiquitinyl hydrolase 1 n=1 Tax=Xenopus laevis Tax... [more]
A0A224ZBD9_9ACAR3.910e-5653.23Ubiquitinyl hydrolase 1 n=1 Tax=Rhipicephalus zamb... [more]
A0A2F0AUB7_ESCRO4.900e-5651.08Ubiquitin carboxyl-terminal hydrolase 15 (Fragment... [more]
A0A2L2XYN7_PARTP6.880e-5653.72Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Para... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82938contigM-pyrifera_M_contig82938:303..902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score197.6
Seed ortholog evalue5.6e-48
Seed eggNOG ortholog6412.HelroP101065
KEGG koko:K11835,ko:K21343
KEGG Pathwayko04137,map04137
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the peptidase C19 family
EggNOG OGs38FGF@33154,3BCZZ@33208,3CWNG@33213,COG5560@1,KOG1870@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121,ko04131
Exons1
Model size600
Cds size600
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816736.135629-CDS-M-pyrifera_M_contig82938:302..9021622816736.135629-CDS-M-pyrifera_M_contig82938:302..902Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82938 303..902 +
1692278147.9579723-CDS-M-pyrifera_M_contig82938:302..9021692278147.9579723-CDS-M-pyrifera_M_contig82938:302..902Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82938 303..902 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82938.19377.1prot_M-pyrifera_M_contig82938.19377.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82938 303..902 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82938.19377.1

>prot_M-pyrifera_M_contig82938.19377.1 ID=prot_M-pyrifera_M_contig82938.19377.1|Name=mRNA_M-pyrifera_M_contig82938.19377.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=200bp
GYPWDLGVDAFGRGGICGLHNLGNTCFMNSAVQCLRATWPLASYMLQGRE
KVDLNRSNPLGTGGVMAMEFAHLVRLALAPSCPGVLAPRGVRVAAARARS
EFAGFAQQDAHELLSFVLDGLHEDLNRVTKKPATEAPEGRGRPDAEVAKE
AWDTYLERNKSVIVDHFSGLLKSVLTCPSCGNVSKTFDPFNSLALPIPPK
back to top

mRNA from alignment at M-pyrifera_M_contig82938:303..902+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82938.19377.1 ID=mRNA_M-pyrifera_M_contig82938.19377.1|Name=mRNA_M-pyrifera_M_contig82938.19377.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig82938:303..902+ (Macrocystis pyrifera P11B4 male)
GGGTATCCTTGGGACTTGGGTGTGGATGCGTTTGGTCGCGGTGGGATTTG CGGGTTGCACAACTTGGGCAACACTTGTTTCATGAACTCAGCGGTGCAGT GTCTTCGTGCCACTTGGCCCCTGGCGTCGTACATGCTGCAGGGTCGCGAG AAGGTGGATTTGAACCGTTCCAACCCGTTGGGCACAGGCGGAGTGATGGC GATGGAATTCGCGCATTTGGTTCGTTTGGCACTGGCTCCTTCGTGTCCAG GAGTCTTGGCGCCTCGAGGAGTGCGGGTGGCAGCAGCGAGAGCGAGGTCG GAGTTCGCAGGGTTTGCACAACAAGATGCCCACGAATTGCTCTCGTTTGT GCTCGATGGACTGCACGAGGATTTGAACCGCGTCACCAAGAAACCCGCCA CGGAGGCACCAGAAGGCCGAGGCAGGCCGGATGCAGAGGTGGCCAAAGAG GCGTGGGATACGTACTTGGAGCGGAACAAATCTGTGATCGTGGACCATTT CTCGGGGCTGCTCAAATCGGTGCTCACGTGTCCTTCGTGCGGCAACGTTT CCAAGACGTTCGACCCGTTCAACTCTCTGGCCCTTCCCATCCCACCCAAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig82938:303..902+

>mRNA_M-pyrifera_M_contig82938.19377.1 ID=mRNA_M-pyrifera_M_contig82938.19377.1|Name=mRNA_M-pyrifera_M_contig82938.19377.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1200bp|location=Sequence derived from alignment at M-pyrifera_M_contig82938:303..902+ (Macrocystis pyrifera P11B4 male)
GGGTATCCTTGGGACTTGGGTGTGGATGCGTTTGGTCGCGGTGGGATTTG
CGGGTTGCACAACTTGGGCAACACTTGTTTCATGAACTCAGCGGTGCAGT
GTCTTCGTGCCACTTGGCCCCTGGCGTCGTACATGCTGCAGGGTCGCGAG
AAGGTGGATTTGAACCGTTCCAACCCGTTGGGCACAGGCGGAGTGATGGC
GATGGAATTCGCGCATTTGGTTCGTTTGGCACTGGCTCCTTCGTGTCCAG
GAGTCTTGGCGCCTCGAGGAGTGCGGGTGGCAGCAGCGAGAGCGAGGTCG
GAGTTCGCAGGGTTTGCACAACAAGATGCCCACGAATTGCTCTCGTTTGT
GCTCGATGGACTGCACGAGGATTTGAACCGCGTCACCAAGAAACCCGCCA
CGGAGGCACCAGAAGGCCGAGGCAGGCCGGATGCAGAGGTGGCCAAAGAG
GCGTGGGATACGTACTTGGAGCGGAACAAATCTGTGATCGTGGACCATTT
CTCGGGGCTGCTCAAATCGGTGCTCACGTGTCCTTCGTGCGGCAACGTTT
CCAAGACGTTCGACCCGTTCAACTCTCTGGCCCTTCCCATCCCACCCAAA
GGGTATCCTTGGGACTTGGGTGTGGATGCGTTTGGTCGCGGTGGGATTTG
CGGGTTGCACAACTTGGGCAACACTTGTTTCATGAACTCAGCGGTGCAGT
GTCTTCGTGCCACTTGGCCCCTGGCGTCGTACATGCTGCAGGGTCGCGAG
AAGGTGGATTTGAACCGTTCCAACCCGTTGGGCACAGGCGGAGTGATGGC
GATGGAATTCGCGCATTTGGTTCGTTTGGCACTGGCTCCTTCGTGTCCAG
GAGTCTTGGCGCCTCGAGGAGTGCGGGTGGCAGCAGCGAGAGCGAGGTCG
GAGTTCGCAGGGTTTGCACAACAAGATGCCCACGAATTGCTCTCGTTTGT
GCTCGATGGACTGCACGAGGATTTGAACCGCGTCACCAAGAAACCCGCCA
CGGAGGCACCAGAAGGCCGAGGCAGGCCGGATGCAGAGGTGGCCAAAGAG
GCGTGGGATACGTACTTGGAGCGGAACAAATCTGTGATCGTGGACCATTT
CTCGGGGCTGCTCAAATCGGTGCTCACGTGTCCTTCGTGCGGCAACGTTT
CCAAGACGTTCGACCCGTTCAACTCTCTGGCCCTTCCCATCCCACCCAAA
back to top