mRNA_M-pyrifera_M_contig82852.19357.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82852.19357.1
Unique NamemRNA_M-pyrifera_M_contig82852.19357.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82852.19357.1 vs. uniprot
Match: W7TR32_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TR32_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 5.840e-19
Identity = 66/202 (32.67%), Postives = 89/202 (44.06%), Query Frame = 1
Query:    1 LIRENSRPAFARPLGRKMVAALFEHYLRLRDIQSLAMMACLLGRERSLASLLDEEKWRACEQYRRLYAELLRSWDEPERAAEVASLRPPGRMDPNVAFSDLTGDLRGAKGGRGRPGPVAGEEAMEFGIFCRRCRAQ---VRGKAPYCRACASFAFACSLXXXXXXXXXXXXLHCGHGGHPEHLRRWFAKEDICPTGCGCRCL 597
            L  E  RP    PLGR +V  L   Y +  D+Q+LA + C+L  E    SLL E K    ++Y R YAELL  W   E  AEV       R+  + + S  T + +     R         + M   + C  C +    V      C+ C  FAF C +            L+C HGGH  H+  WF + D+C +GCGCRC 
Sbjct:  605 LSSEALRPWRDGPLGRPLVEKLLTVYEKEGDVQTLATIVCVLDVEHP-GSLLQESKRAEYDRYLRAYAELLYRWGALETRAEVLK-----RLSVSSSASISTEESKCVSMRR---------QDMVVALRCEACGSLDGGVDAGTGVCQKCKMFAFRCVICQLAVRGQSMFCLNCSHGGHTPHVWDWFIENDMCASGCGCRCF 791          
BLAST of mRNA_M-pyrifera_M_contig82852.19357.1 vs. uniprot
Match: A0A8M3ARS3_DANRE (WD repeat-containing protein 59 isoform X1 n=4 Tax=Danio rerio TaxID=7955 RepID=A0A8M3ARS3_DANRE)

HSP 1 Score: 94.7 bits (234), Expect = 6.070e-19
Identity = 48/154 (31.17%), Postives = 66/154 (42.86%), Query Frame = 1
Query:  151 LLDEEKWRACEQYRRLYAELLRSWDEPERAAEVASLRPPGRMDPNVAFSDLTGDLRGAKGGRGRPGPVAGEEAMEFGIFCRRCRAQVRGKAPYCRACASFAFACSLXXXXXXXXXXXXLHCGHGGHPEHLRRWFAKEDICPTGCGCRCLQNHQY 612
            LLD       + +++ Y E+L  W   ++ AEV            + F                  P    + +EFG++C  CR+Q RG    C  C  F F CS+            L CGHGGH  H+  WF  +D+CPTGCGC CLQ   +
Sbjct:  858 LLDPSNSWQFDDFKKCYGEILHRWGMKDKRAEV------------LKFVSC---------------PPEPHKGIEFGVYCCHCRSQARGTQ--CAVCKRFTFQCSICHVAVRGSSNFCLSCGHGGHTSHMMDWFRSQDVCPTGCGCHCLQQSTF 982          
BLAST of mRNA_M-pyrifera_M_contig82852.19357.1 vs. uniprot
Match: UPI0003289F4C (GATOR complex protein WDR59 n=1 Tax=Dasypus novemcinctus TaxID=9361 RepID=UPI0003289F4C)

HSP 1 Score: 93.6 bits (231), Expect = 1.520e-18
Identity = 49/149 (32.89%), Postives = 68/149 (45.64%), Query Frame = 1
Query:  151 LLDEEKWRACEQYRRLYAELLRSWDEPERAAEVASLRPPGRMDPNVAFSDLTGDLRGAKGGRGRPGPVAGEEAMEFGIFCRRCRAQVRGKAPYCRACASFAFACSLXXXXXXXXXXXXLHCGHGGHPEHLRRWFAKEDICPTGCGCRCL 597
            LLD    +  + +++ Y E+L  W   E+ AEV            + F                P P  G   +EFG++C  CR++VRG    C  C  F F C++            L CGHGGH  H+  WF  +++CPTGCGCRCL
Sbjct:  852 LLDPANTQQFDDFKKCYGEILYRWGLREKRAEV------------LKFVSCP------------PDPHKG---IEFGVYCSHCRSEVRGTQ--CAICKGFTFQCAICHVAVRGSSNFCLTCGHGGHTSHMMEWFRTQEVCPTGCGCRCL 971          
BLAST of mRNA_M-pyrifera_M_contig82852.19357.1 vs. uniprot
Match: UPI0014256029 (GATOR complex protein WDR59-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014256029)

HSP 1 Score: 90.5 bits (223), Expect = 1.760e-17
Identity = 49/150 (32.67%), Postives = 69/150 (46.00%), Query Frame = 1
Query:  145 ASLLDEEKWRACEQYRRLYAELLRSWDEPERAAEVASLRPPGRMDPNVAFSDLTGDLRGAKGGRGRPGPVAGEEAMEFGIFCRRCRAQVRGKAPYCRACASFAFACSLXXXXXXXXXXXXLHCGHGGHPEHLRRWFAKEDICPTGCGCRC 594
            + LLD  KWR  ++++ +YAE+L  W   E  A+V +               LT            P   +G E ++FGI C+ C+  V            F F+C++            L CGHGGH  H+  WF +ED+CPTGCGCRC
Sbjct:  809 SKLLDLNKWRQYDEFKSIYAEILYQWKIMESRADVLNY--------------LTHP----------PAETSGLEFVDFGITCQNCKKSVFNXXXXXXX--XFTFSCAICHVAVKGSSNFCLVCGHGGHTSHMVEWFKEEDVCPTGCGCRC 932          
BLAST of mRNA_M-pyrifera_M_contig82852.19357.1 vs. uniprot
Match: A0A2R5GAW0_9STRA (Restriction of telomere capping protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GAW0_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.050e-16
Identity = 56/198 (28.28%), Postives = 80/198 (40.40%), Query Frame = 1
Query:   37 PLGRKMVAALFEHYLRLRDIQSLAMMACLLGRE------RSLASLLDEEKWRACEQYRRLYAELLRSWDEPERAAEVASLRPPGRMDPNVAFSDLT------GDLRGAKGGRGRPGPVAGEEAMEFGIFCRRCRAQVRGKAPYCRACASFAFACSLXXXXXXXXXXXXLHCGHGGHPEHLRRWFAKEDICPTGCGCRC 594
            P GR++V  +F+     +D+QSLA+++C+L  E      ++  SLLD       +++RR YA +L  W    + AEV     P  +        +       G + G  G   R     G       + C  C   VRG   +C                          CGHGGH EH+  WF   + CPTGCGC C
Sbjct:  805 PCGRRLVQRIFQDLAHFKDVQSLAILSCVLQEESNSEDWKNTMSLLDPAHREEHDRFRRAYANILHRWGLNTKRAEVMKYVKPDSLQTETNHVSIAPSCAHCGSMHGIDGDVNRLRCAKGRR-----LQCVICSCSVRGLCTFCPL------------------------CGHGGHAEHMNAWFLAANECPTGCGCTC 973          
BLAST of mRNA_M-pyrifera_M_contig82852.19357.1 vs. uniprot
Match: UPI0005ABCB16 (WD repeat-containing protein 59 isoform X1 n=4 Tax=Opiinae TaxID=68883 RepID=UPI0005ABCB16)

HSP 1 Score: 85.5 bits (210), Expect = 9.460e-16
Identity = 49/155 (31.61%), Postives = 63/155 (40.65%), Query Frame = 1
Query:  151 LLDEEKWRACEQYRRLYAELLRSWDEPERAAEVASLRPPGRMDPNVAFSDLTGDLRGAKGGRGRPGPVAGEEAMEFGIFCRRCRAQVRGKAPYCRACASFAFACSLXXXXXXXXXXXXLHCGHGGHPEHLRRWFAKEDICPTGCGCRCLQNHQYL 615
            LLDE+     + Y++ YAE+L  W   +  A+V       ++DPN                          + +EF   C  C    RG  P C  C    F C +              CGHGGH +HL  WF KE +CPTGCGC CLQ    L
Sbjct:  839 LLDEKNNTLYDSYKKAYAEVLHRWRLLDARAQVLKHVSSSQLDPN--------------------------KDVEFQSECHLCTKTSRG--PQCSHCKRLTFQCVICHISVRGPSNFCTVCGHGGHTQHLAAWFTKESVCPTGCGCCCLQESTSL 965          
BLAST of mRNA_M-pyrifera_M_contig82852.19357.1 vs. uniprot
Match: D6WN20_TRICA (WD repeat-containing protein 59 homolog-like Protein n=2 Tax=Tribolium TaxID=7069 RepID=D6WN20_TRICA)

HSP 1 Score: 84.7 bits (208), Expect = 1.710e-15
Identity = 62/227 (27.31%), Postives = 98/227 (43.17%), Query Frame = 1
Query:    7 RENSRPAFARPLGRKMVAALFEHYLRLRDIQSLAMMACLLGR---------ERSLASLLDEEKWRAC-------EQYRRLYAELLRSWD-EPERAAEVASLRPPGRMDPNVAFSDL-------TGDLRGAKGGRGRP-----GPVAGEEAMEFGIFCRRC-RAQVRGKAPYCRACASFAFACSLXXXXXXXXXXXXLHCGHGGHPEHLRRWFAKEDICPTGCGCRCL 597
            R      +  P G ++  AL  HY +  DIQ  AM++C+ G+         ++SL    D   + A        +++     + +RS   +  R  E+ +L P  + +P+ +  +        T    G    R        GP    E +EF   C+ C +  + GK   C  C  F+  C +            + CGHGGH +HL++WF K D+CP+GCGCRCL
Sbjct:  631 RNKDEEWYNHPFGNQLSEALISHYAQHSDIQMAAMLSCIFGKNEVNSSHQSKKSLKYTNDTSPYHAIPPMDLPSDEWVFPTLKHMRSTSLDNLRLNEIKNLLP--KKNPSSSLHEYFKLSYAETLHRWGFLYNRAEVLKYMCGPPDKHEGVEFFTHCKNCLKPDLYGKHCTCSNCKKFSLNCIICHLSVRGSANCCIVCGHGGHTKHLKQWFEKRDVCPSGCGCRCL 855          
BLAST of mRNA_M-pyrifera_M_contig82852.19357.1 vs. uniprot
Match: A0A8B7ZP01_ACAPL (GATOR complex protein WDR59-like isoform X1 n=2 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7ZP01_ACAPL)

HSP 1 Score: 84.7 bits (208), Expect = 1.750e-15
Identity = 33/77 (42.86%), Postives = 43/77 (55.84%), Query Frame = 1
Query:  373 EFGIFCRRCRAQVRGKAPYCRACASFAFACSLXXXXXXXXXXXXLHCGHGGHPEHLRRWFAKEDICPTGCGCRCLQN 603
            +FG+FC++C    R     C  C S++F C++            L CGHGGH  H+  WF  ED+CPTGCGCRC  N
Sbjct:  899 DFGVFCQKCHK--RSYKVQCEHCQSYSFQCAICHTAVKGSSSFCLACGHGGHTSHMLEWFKTEDVCPTGCGCRCQTN 973          
BLAST of mRNA_M-pyrifera_M_contig82852.19357.1 vs. uniprot
Match: UPI000719E0FC (WD repeat-containing protein 59-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719E0FC)

HSP 1 Score: 80.1 bits (196), Expect = 1.780e-15
Identity = 47/150 (31.33%), Postives = 61/150 (40.67%), Query Frame = 1
Query:  151 LLDEEKWRACEQYRRLYAELLRSWDEPERAAEVASLRPPGRMDPNVAFSDLTGDLRGAKGGRGRPGPVAGEEAMEFGIFCRRCRAQVRGKAPYCRACASFAFACSLXXXXXXXXXXXXLHCGHGGHPEHLRRWFAKEDICPTGCGCRCLQ 600
            LLD +     + Y+  YA +L  W   ER  EV +             S  T   RG                +E    C  C  +     P C  C  +AF CS+            L C HGGH  HL  WFA++++CPTGCGCRCL+
Sbjct:   22 LLDPDVTAQHDAYKHAYANVLYYWKLHERRIEVLNF-----------VSSATEQHRG----------------VEVQTLCHHCGEKNATGGPQCSHCKHYAFRCSVCHVSVKGPANFCLACYHGGHTYHLMDWFAEQEVCPTGCGCRCLK 144          
BLAST of mRNA_M-pyrifera_M_contig82852.19357.1 vs. uniprot
Match: A0A0J7L625_LASNI (Wd repeat-containing protein 59 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7L625_LASNI)

HSP 1 Score: 84.3 bits (207), Expect = 2.280e-15
Identity = 49/155 (31.61%), Postives = 68/155 (43.87%), Query Frame = 1
Query:  151 LLDEEKWRACEQYRRLYAELLRSWDEPERAAEVASLRPPGRMDPNVAFSDLTGDLRGAKGGRGRPGPVAGEEAMEFGIFCRRCRAQVRGKAPYCRACASFAFACSLXXXXXXXXXXXXLHCGHGGHPEHLRRWFAKEDICPTGCGCRCLQNHQYL 615
            LLDE+     + Y++ YAE L  W+  +  A+V           +++ S                 P   ++ +E    CR C    +G  P C  C   +F C +            + CGHGGH EHL  WFAKE +CPTGCGC CLQ +  L
Sbjct:  666 LLDEKYTALYDGYKKSYAEALHRWELLDGRAQVLK---------HLSAS-----------------PFDVQKGVELQNECRLCSKISQG--PQCANCKGLSFQCIICHVTVRGASNFCMFCGHGGHIEHLAAWFAKETVCPTGCGCHCLQENSML 792          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82852.19357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TR32_9STRA5.840e-1932.67Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A8M3ARS3_DANRE6.070e-1931.17WD repeat-containing protein 59 isoform X1 n=4 Tax... [more]
UPI0003289F4C1.520e-1832.89GATOR complex protein WDR59 n=1 Tax=Dasypus novemc... [more]
UPI00142560291.760e-1732.67GATOR complex protein WDR59-like n=1 Tax=Anneissia... [more]
A0A2R5GAW0_9STRA2.050e-1628.28Restriction of telomere capping protein 1 n=1 Tax=... [more]
UPI0005ABCB169.460e-1631.61WD repeat-containing protein 59 isoform X1 n=4 Tax... [more]
D6WN20_TRICA1.710e-1527.31WD repeat-containing protein 59 homolog-like Prote... [more]
A0A8B7ZP01_ACAPL1.750e-1542.86GATOR complex protein WDR59-like isoform X1 n=2 Ta... [more]
UPI000719E0FC1.780e-1531.33WD repeat-containing protein 59-like n=1 Tax=Priap... [more]
A0A0J7L625_LASNI2.280e-1531.61Wd repeat-containing protein 59 n=1 Tax=Lasius nig... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82852contigM-pyrifera_M_contig82852:209..832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score98.2
Seed ortholog evalue4.8e-18
Seed eggNOG ortholog185453.XP_006860369.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WD repeat-containing protein 59
EggNOG OGs350QQ@311790,38BY8@33154,3BGI8@33208,3D1KM@33213,3JCQJ@40674,481GF@7711,4943R@7742,COG2319@1,KOG0309@2759
COG Functional cat.B
Best tax levelAfrotheria
Best eggNOG OGNA|NA|NA
Exons1
Model size624
Cds size624
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816735.357609-CDS-M-pyrifera_M_contig82852:208..8321622816735.357609-CDS-M-pyrifera_M_contig82852:208..832Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82852 209..832 +
1692278147.581391-CDS-M-pyrifera_M_contig82852:208..8321692278147.581391-CDS-M-pyrifera_M_contig82852:208..832Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82852 209..832 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82852.19357.1prot_M-pyrifera_M_contig82852.19357.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82852 209..832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82852.19357.1

>prot_M-pyrifera_M_contig82852.19357.1 ID=prot_M-pyrifera_M_contig82852.19357.1|Name=mRNA_M-pyrifera_M_contig82852.19357.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=208bp
LIRENSRPAFARPLGRKMVAALFEHYLRLRDIQSLAMMACLLGRERSLAS
LLDEEKWRACEQYRRLYAELLRSWDEPERAAEVASLRPPGRMDPNVAFSD
LTGDLRGAKGGRGRPGPVAGEEAMEFGIFCRRCRAQVRGKAPYCRACASF
AFACSLCNLPVKGLSSFCLHCGHGGHPEHLRRWFAKEDICPTGCGCRCLQ
NHQYLRR*
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mRNA from alignment at M-pyrifera_M_contig82852:209..832+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82852.19357.1 ID=mRNA_M-pyrifera_M_contig82852.19357.1|Name=mRNA_M-pyrifera_M_contig82852.19357.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig82852:209..832+ (Macrocystis pyrifera P11B4 male)
CTCATTCGAGAAAACTCGAGGCCTGCCTTCGCTCGGCCACTGGGGAGGAA GATGGTCGCCGCTCTCTTCGAGCACTACCTCCGCCTTCGCGACATCCAGT CCTTGGCAATGATGGCCTGCCTCCTAGGCCGTGAGCGTTCCCTTGCCTCT CTCCTGGACGAAGAAAAGTGGCGTGCCTGTGAGCAGTACCGCAGACTCTA TGCAGAGCTCCTGCGGAGCTGGGATGAGCCAGAGAGAGCTGCAGAGGTCG CCTCCCTCCGGCCCCCTGGCCGCATGGACCCAAACGTCGCCTTTTCAGAC CTTACTGGCGACCTGCGCGGCGCCAAGGGCGGGAGAGGGCGGCCTGGCCC TGTGGCGGGCGAGGAGGCCATGGAGTTCGGCATTTTCTGCAGGAGGTGCA GGGCACAGGTGCGCGGCAAGGCGCCATATTGCAGGGCGTGCGCTTCCTTT GCATTCGCCTGCTCCCTTTGCAACCTCCCCGTCAAGGGCCTCTCGTCCTT CTGCCTCCACTGCGGACACGGCGGCCATCCCGAGCACCTCCGCCGCTGGT TCGCCAAGGAAGACATCTGCCCCACTGGCTGCGGCTGCCGCTGCCTCCAG AACCATCAGTACCTCCGCCGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82852:209..832+

>mRNA_M-pyrifera_M_contig82852.19357.1 ID=mRNA_M-pyrifera_M_contig82852.19357.1|Name=mRNA_M-pyrifera_M_contig82852.19357.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1248bp|location=Sequence derived from alignment at M-pyrifera_M_contig82852:209..832+ (Macrocystis pyrifera P11B4 male)
CTCATTCGAGAAAACTCGAGGCCTGCCTTCGCTCGGCCACTGGGGAGGAA
GATGGTCGCCGCTCTCTTCGAGCACTACCTCCGCCTTCGCGACATCCAGT
CCTTGGCAATGATGGCCTGCCTCCTAGGCCGTGAGCGTTCCCTTGCCTCT
CTCCTGGACGAAGAAAAGTGGCGTGCCTGTGAGCAGTACCGCAGACTCTA
TGCAGAGCTCCTGCGGAGCTGGGATGAGCCAGAGAGAGCTGCAGAGGTCG
CCTCCCTCCGGCCCCCTGGCCGCATGGACCCAAACGTCGCCTTTTCAGAC
CTTACTGGCGACCTGCGCGGCGCCAAGGGCGGGAGAGGGCGGCCTGGCCC
TGTGGCGGGCGAGGAGGCCATGGAGTTCGGCATTTTCTGCAGGAGGTGCA
GGGCACAGGTGCGCGGCAAGGCGCCATATTGCAGGGCGTGCGCTTCCTTT
GCATTCGCCTGCTCCCTTTGCAACCTCCCCGTCAAGGGCCTCTCGTCCTT
CTGCCTCCACTGCGGACACGGCGGCCATCCCGAGCACCTCCGCCGCTGGT
TCGCCAAGGAAGACATCTGCCCCACTGGCTGCGGCTGCCGCTGCCTCCAG
AACCATCAGTACCTCCGCCGCTGACTCATTCGAGAAAACTCGAGGCCTGC
CTTCGCTCGGCCACTGGGGAGGAAGATGGTCGCCGCTCTCTTCGAGCACT
ACCTCCGCCTTCGCGACATCCAGTCCTTGGCAATGATGGCCTGCCTCCTA
GGCCGTGAGCGTTCCCTTGCCTCTCTCCTGGACGAAGAAAAGTGGCGTGC
CTGTGAGCAGTACCGCAGACTCTATGCAGAGCTCCTGCGGAGCTGGGATG
AGCCAGAGAGAGCTGCAGAGGTCGCCTCCCTCCGGCCCCCTGGCCGCATG
GACCCAAACGTCGCCTTTTCAGACCTTACTGGCGACCTGCGCGGCGCCAA
GGGCGGGAGAGGGCGGCCTGGCCCTGTGGCGGGCGAGGAGGCCATGGAGT
TCGGCATTTTCTGCAGGAGGTGCAGGGCACAGGTGCGCGGCAAGGCGCCA
TATTGCAGGGCGTGCGCTTCCTTTGCATTCGCCTGCTCCCTTTGCAACCT
CCCCGTCAAGGGCCTCTCGTCCTTCTGCCTCCACTGCGGACACGGCGGCC
ATCCCGAGCACCTCCGCCGCTGGTTCGCCAAGGAAGACATCTGCCCCACT
GGCTGCGGCTGCCGCTGCCTCCAGAACCATCAGTACCTCCGCCGCTGA
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