mRNA_M-pyrifera_M_contig82811.19353.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82811.19353.1
Unique NamemRNA_M-pyrifera_M_contig82811.19353.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig82811.19353.1 vs. uniprot
Match: A0A1S0TEP9_LOALO (Uncharacterized protein n=1 Tax=Loa loa TaxID=7209 RepID=A0A1S0TEP9_LOALO)

HSP 1 Score: 75.5 bits (184), Expect = 1.350e-16
Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    1 MAYNYVVTAQPPTAVTHALRGRFTDPGAVNLVVAKGTRVELFLVTAEGIEPLLETPVFG 177
            MA NY+VTA  PT VTHAL G F  P  +NLV+AK  RVELFLVT EG++P  E PVFG
Sbjct:    1 MALNYIVTAYKPTVVTHALVGSFIVPTELNLVLAKTNRVELFLVTPEGLKPHRECPVFG 59
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BLAST of mRNA_M-pyrifera_M_contig82811.19353.1 vs. uniprot
Match: A0A7R9XUB0_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9XUB0_9VIRI)

HSP 1 Score: 79.7 bits (195), Expect = 5.160e-16
Identity = 34/57 (59.65%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    7 YNYVVTAQPPTAVTHALRGRFTDPGAVNLVVAKGTRVELFLVTAEGIEPLLETPVFG 177
            YNYVVTA  P+AVTH++ G FT PG +NL+VAK TR+E++L+T EG++PLL+ P++G
Sbjct:   10 YNYVVTAAKPSAVTHSVVGNFTAPGELNLIVAKCTRLEIYLLTPEGLQPLLDVPLYG 66
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BLAST of mRNA_M-pyrifera_M_contig82811.19353.1 vs. uniprot
Match: A0A6P8HA27_ACTTE (DNA damage-binding protein 1-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HA27_ACTTE)

HSP 1 Score: 77.4 bits (189), Expect = 3.490e-15
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    1 MAYNYVVTAQPPTAVTHALRGRFTDPGAVNLVVAKGTRVELFLVTAEGIEPLLETPVFG 177
            MAYNYVVTAQ PTAV  A+ G FT P  +NLV+AK TR+E+ LVT EG+ P+L+  ++G
Sbjct:    1 MAYNYVVTAQKPTAVNAAVVGNFTGPNDLNLVIAKNTRIEIHLVTPEGLRPMLDVGIYG 59
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BLAST of mRNA_M-pyrifera_M_contig82811.19353.1 vs. uniprot
Match: A0A7S0I7E7_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0I7E7_MICPS)

HSP 1 Score: 77.0 bits (188), Expect = 4.710e-15
Identity = 33/59 (55.93%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 MAYNYVVTAQPPTAVTHALRGRFTDPGAVNLVVAKGTRVELFLVTAEGIEPLLETPVFG 177
            MAYNYVVTAQ PT+VTH+L G FT    +NL+VAK TR+E+ ++T +G++P+ + PV+G
Sbjct:    1 MAYNYVVTAQKPTSVTHSLVGNFTHDNELNLIVAKCTRIEIHMLTPDGLQPMHDVPVYG 59
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BLAST of mRNA_M-pyrifera_M_contig82811.19353.1 vs. uniprot
Match: A0A7S0PSR1_MICPS (DNA damage-binding protein 1 (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0PSR1_MICPS)

HSP 1 Score: 77.0 bits (188), Expect = 4.760e-15
Identity = 33/59 (55.93%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 MAYNYVVTAQPPTAVTHALRGRFTDPGAVNLVVAKGTRVELFLVTAEGIEPLLETPVFG 177
            MAYNYVVTAQ PT+VTH+L G FT    +NL+VAK TR+E+ ++T +G++P+ + PV+G
Sbjct:   15 MAYNYVVTAQKPTSVTHSLVGNFTHDNELNLIVAKCTRIEIHMLTPDGLQPMHDVPVYG 73
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BLAST of mRNA_M-pyrifera_M_contig82811.19353.1 vs. uniprot
Match: C1E9R7_MICCC (DNA damage-binding protein 1 n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E9R7_MICCC)

HSP 1 Score: 77.0 bits (188), Expect = 4.760e-15
Identity = 33/59 (55.93%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 MAYNYVVTAQPPTAVTHALRGRFTDPGAVNLVVAKGTRVELFLVTAEGIEPLLETPVFG 177
            MAYNYVVTAQ PT+VTH+L G FT    +NL+VAK TR+E+ ++T +G++P+ + PV+G
Sbjct:    1 MAYNYVVTAQKPTSVTHSLVGNFTHDNELNLIVAKCTRIEIHMLTPDGLQPMHDVPVYG 59
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BLAST of mRNA_M-pyrifera_M_contig82811.19353.1 vs. uniprot
Match: A0A0T6B2T5_9SCAR (Uncharacterized protein (Fragment) n=1 Tax=Oryctes borbonicus TaxID=1629725 RepID=A0A0T6B2T5_9SCAR)

HSP 1 Score: 72.0 bits (175), Expect = 1.140e-14
Identity = 30/59 (50.85%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 MAYNYVVTAQPPTAVTHALRGRFTDPGAVNLVVAKGTRVELFLVTAEGIEPLLETPVFG 177
            M ++Y+VTA  PTAVT  + G FT P  +NL+VAK TR+E++LVT EG++P+ E  ++G
Sbjct:    4 MTHHYIVTAHKPTAVTACVTGNFTSPNDINLIVAKNTRLEIYLVTPEGLKPVKEVTIYG 62
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BLAST of mRNA_M-pyrifera_M_contig82811.19353.1 vs. uniprot
Match: A0A7P0TAX4_HUMAN (DNA damage-binding protein 1 n=1 Tax=Homo sapiens TaxID=9606 RepID=A0A7P0TAX4_HUMAN)

HSP 1 Score: 70.1 bits (170), Expect = 1.600e-14
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 MAYNYVVTAQPPTAVTHALRGRFTDPGAVNLVVAKGTRVELFLVTAEGIEPLLETPVFG 177
            M+YNYVVTAQ PTAV   + G FT    +NL++AK TR+E+++VTAEG+ P+ E  ++G
Sbjct:    1 MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYG 59
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BLAST of mRNA_M-pyrifera_M_contig82811.19353.1 vs. uniprot
Match: UPI000A2A45CD (DNA damage-binding protein 1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A45CD)

HSP 1 Score: 75.1 bits (183), Expect = 1.650e-14
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 MAYNYVVTAQPPTAVTHALRGRFTDPGAVNLVVAKGTRVELFLVTAEGIEPLLETPVFG 177
            MAYNYVVTAQ PTAV   + G FT P  +NLV+AK TR+E+ LVT EG+ P+L+  ++G
Sbjct:    1 MAYNYVVTAQKPTAVNAVVVGNFTGPDDLNLVIAKSTRIEIHLVTPEGLRPVLDVGIYG 59
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BLAST of mRNA_M-pyrifera_M_contig82811.19353.1 vs. uniprot
Match: A0A044TM97_ONCVO (Uncharacterized protein n=6 Tax=Onchocercidae TaxID=6296 RepID=A0A044TM97_ONCVO)

HSP 1 Score: 75.5 bits (184), Expect = 1.660e-14
Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    1 MAYNYVVTAQPPTAVTHALRGRFTDPGAVNLVVAKGTRVELFLVTAEGIEPLLETPVFG 177
            MA NY+VTA  PT VTHAL G F  P  +NLV+AK  RVELFLVT EG++P  E PVFG
Sbjct:    1 MALNYIVTAYKPTVVTHALVGSFIVPTELNLVLAKTNRVELFLVTPEGLKPHRECPVFG 59
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82811.19353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1S0TEP9_LOALO1.350e-1664.41Uncharacterized protein n=1 Tax=Loa loa TaxID=7209... [more]
A0A7R9XUB0_9VIRI5.160e-1659.65Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A6P8HA27_ACTTE3.490e-1559.32DNA damage-binding protein 1-like n=1 Tax=Actinia ... [more]
A0A7S0I7E7_MICPS4.710e-1555.93Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A7S0PSR1_MICPS4.760e-1555.93DNA damage-binding protein 1 (Fragment) n=1 Tax=Mi... [more]
C1E9R7_MICCC4.760e-1555.93DNA damage-binding protein 1 n=1 Tax=Micromonas co... [more]
A0A0T6B2T5_9SCAR1.140e-1450.85Uncharacterized protein (Fragment) n=1 Tax=Oryctes... [more]
A0A7P0TAX4_HUMAN1.600e-1452.54DNA damage-binding protein 1 n=1 Tax=Homo sapiens ... [more]
UPI000A2A45CD1.650e-1457.63DNA damage-binding protein 1 n=1 Tax=Exaiptasia di... [more]
A0A044TM97_ONCVO1.660e-1464.41Uncharacterized protein n=6 Tax=Onchocercidae TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82811contigM-pyrifera_M_contig82811:2..178 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score76.3
Seed ortholog evalue5.5e-12
Seed eggNOG ortholog296587.XP_002503825.1
Preferred nameDDB1
KEGG koko:K10610
KEGG Pathwayko03420,ko04120,ko05161,ko05203,map03420,map04120,map05161,map05203
KEGG ModuleM00385,M00386
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000151,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019538,GO:0019941,GO:0030163,GO:0031461,GO:0032991,GO:0033554,GO:0034641,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051603,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
EggNOG free text desc.CPSF A subunit region
EggNOG OGs34HBC@3041,37PZC@33090,KOG1897@1,KOG1897@2759
COG Functional cat.L
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400,ko04121
Exons1
Model size177
Cds size177
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816735.2194214-CDS-M-pyrifera_M_contig82811:1..1781622816735.2194214-CDS-M-pyrifera_M_contig82811:1..178Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82811 2..178 -
1692278147.5363796-CDS-M-pyrifera_M_contig82811:1..1781692278147.5363796-CDS-M-pyrifera_M_contig82811:1..178Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82811 2..178 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82811.19353.1prot_M-pyrifera_M_contig82811.19353.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82811 2..178 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82811.19353.1

>prot_M-pyrifera_M_contig82811.19353.1 ID=prot_M-pyrifera_M_contig82811.19353.1|Name=mRNA_M-pyrifera_M_contig82811.19353.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
MAYNYVVTAQPPTAVTHALRGRFTDPGAVNLVVAKGTRVELFLVTAEGIE
PLLETPVFG
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mRNA from alignment at M-pyrifera_M_contig82811:2..178-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82811.19353.1 ID=mRNA_M-pyrifera_M_contig82811.19353.1|Name=mRNA_M-pyrifera_M_contig82811.19353.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=177bp|location=Sequence derived from alignment at M-pyrifera_M_contig82811:2..178- (Macrocystis pyrifera P11B4 male)
ATGGCGTACAACTATGTGGTGACGGCGCAACCGCCTACAGCAGTGACGCA
TGCGCTGCGTGGGAGGTTCACTGACCCTGGCGCGGTGAACCTGGTGGTGG
CGAAGGGCACGAGGGTGGAGCTCTTCCTGGTCACTGCCGAGGGCATCGAG
CCTCTGCTGGAAACACCGGTCTTTGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82811:2..178-

>mRNA_M-pyrifera_M_contig82811.19353.1 ID=mRNA_M-pyrifera_M_contig82811.19353.1|Name=mRNA_M-pyrifera_M_contig82811.19353.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig82811:2..178- (Macrocystis pyrifera P11B4 male)
ATGGCGTACAACTATGTGGTGACGGCGCAACCGCCTACAGCAGTGACGCA
TGCGCTGCGTGGGAGGTTCACTGACCCTGGCGCGGTGAACCTGGTGGTGG
CGAAGGGCACGAGGGTGGAGCTCTTCCTGGTCACTGCCGAGGGCATCGAG
CCTCTGCTGGAAACACCGGTCTTTGGCATGGCGTACAACTATGTGGTGAC
GGCGCAACCGCCTACAGCAGTGACGCATGCGCTGCGTGGGAGGTTCACTG
ACCCTGGCGCGGTGAACCTGGTGGTGGCGAAGGGCACGAGGGTGGAGCTC
TTCCTGGTCACTGCCGAGGGCATCGAGCCTCTGCTGGAAACACCGGTCTT
TGGC
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