mRNA_M-pyrifera_M_contig82802.19349.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82802.19349.1
Unique NamemRNA_M-pyrifera_M_contig82802.19349.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82802.19349.1 vs. uniprot
Match: A0A5A8CAP2_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CAP2_CAFRO)

HSP 1 Score: 145 bits (367), Expect = 7.370e-37
Identity = 93/215 (43.26%), Postives = 129/215 (60.00%), Query Frame = 1
Query:    1 ARERLLAKVKRDNGRIQELRGEAXXXXXLLERRRRALRDVEADIAERQSGGGGEDKFEALFRRDQEMTEFLDRMGDAMGREEAEQRRARETIVALLEHVSVGLERGSAMPSRQEAGEMREDXXXXXXXXXESKETEERLREELAQRKEDLRKIDTLDEKIGIEMRSLQAKMETMRLEMPRLGDLDALREAATEAHATLAEKQEGYRRRRDALRAQ 645
            +R RLLAKV+ DN R + L            R  R   +++ DIAER+ GGG E K++ LFRRD+EMT+F+DR  +   +EEAEQ RARETIVALLEH+S GL R  +MPS+ E  E+ E+          S+ TEE L+ ELA+R+ +  K+  +D  +  E  +LQ ++  MR EM    D+D +R AA +  A L  ++  Y+RRRD  R Q
Sbjct:  296 SRARLLAKVRTDNERTKALTAALAEHTDERNRLTRLAAELDRDIAERERGGGQEAKYDELFRRDEEMTQFIDRYPEMRSKEEAEQARARETIVALLEHISGGLAREHSMPSQAEHKELSEELQDKEQELAASRYTEEHLQAELARRRGEFEKVTRIDSDVTAETSTLQERIRVMRAEMEVFEDVDRVRTAAEKTMAELEARRNAYKRRRDGARQQ 510          
BLAST of mRNA_M-pyrifera_M_contig82802.19349.1 vs. uniprot
Match: A0A482RGJ2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RGJ2_9ARCH)

HSP 1 Score: 135 bits (340), Expect = 1.020e-35
Identity = 86/195 (44.10%), Postives = 119/195 (61.03%), Query Frame = 1
Query:  109 LRDVEADIAERQSGGGGEDKFEALFRRDQEMTEFLDRMGDAMGREEAEQRRARETIVALLEHVSVGLERGSAMPSRQEAGEMREDXXXXXXXXXESKETEERLREELAQRKEDLRKIDTLDEKIGIEMRSLQAKMETMRLEMPRLGDLDALREAATEAHATLAEKQEGYRRRRDALRAQAAAADAELEGAKERLA 693
            L D+  DI ER++      K+E L +RDQEMTEF+DR G+   +E AEQ+R   T+VALLEH+S G+ER   MPSR++A EM+ED          S  T ERL+EEL  R+ +L KI+TLDE+I  E++ +  +ME MR E+ +  DL+ +R A  +    L  K   Y +RRD LR +  AA  ++E  K  LA
Sbjct:    4 LSDITTDIEERRNEASDGAKYELLLKRDQEMTEFIDRFGELHEKEVAEQKRMHNTVVALLEHISEGMEREKVMPSREQAEEMKEDLQDKNREYKASVMTSERLQEELTLRQTELEKINTLDERIVGELKMMNERMEAMRAELSKYRDLEGVRTAGAKVKEELRGKLAAYTQRRDMLRVRVQAAAMDVEKKKAALA 198          
BLAST of mRNA_M-pyrifera_M_contig82802.19349.1 vs. uniprot
Match: A0A2R5GD01_9STRA (Intraflagellar transport protein 74-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GD01_9STRA)

HSP 1 Score: 133 bits (334), Expect = 2.520e-32
Identity = 90/222 (40.54%), Postives = 133/222 (59.91%), Query Frame = 1
Query:    1 ARERLLAKVKRDNGRIQELRGEAXXXXXLLERRRRALRDVEADIAERQSGGGG-----EDKFEALFRRDQEMTEFLDRMGDAMGREEAEQRRARETIVALLEHVSVGLERGSAMPSRQEAGEMREDXXXXXXXXXESKETEERLREELAQRKEDLRKIDTLDEKIGIEMRSLQAKMETMRLEMPRLGDLDALREAATEAHATLAEKQEGYRRRRDALRAQAA 651
            AR RLL KVK+DN +IQ+L  +          +RR + +V+A++ ER+SGGG        K+ AL  RD+EM+EFLD   + M RE  EQ+RA++ +V LLEH S  L +   +PS ++  EM++           S  T E+L +EL +R+ +L KI+TLDEKI +E++SL  ++  M+ EM +   +D LRE A      L E + GY+RRRD +R+Q A
Sbjct:  282 ARARLLDKVKQDNQKIQDLGKQIDDAEDECRDKRRQIAEVQAELDERKSGGGAGGASEAQKYAALEERDREMSEFLDTFEEQMVRELEEQKRAQKMVVGLLEHTSRHLAQSENLPSEEQYSEMKDALTFKKRQLESSASTMEQLEKELEKRRGELEKINTLDEKIEVELKSLTERIAVMKSEMVQFVKIDELREQADATREELLELRAGYQRRRDHMRSQVA 503          
BLAST of mRNA_M-pyrifera_M_contig82802.19349.1 vs. uniprot
Match: A0A7S2C280_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C280_9STRA)

HSP 1 Score: 124 bits (311), Expect = 5.890e-30
Identity = 79/227 (34.80%), Postives = 130/227 (57.27%), Query Frame = 1
Query:   10 RLLAKVKRDNGRIQELRGEAXXXXXLLERRRRALRDVEADIAERQSGGGGEDKFEALFRRDQEMTEFLDRMGDAMGREEAEQRRARETIVALLEHVSVGLERGSAMPSRQEAGEMREDXXXXXXXXXESKETEERLREELAQRKEDLRKIDTLDEKIGIEMRSLQAKMETMRLEMPRLGDLDALREAATEAHATLAEKQEGYRRRRDALRAQAAAADAELEGAKERL 690
            ++LAKVK D  R +++  +         +  + L ++  D+ +R +G   +DK+E L++RD+EM+EF+D      G  + +Q   +  IV LLEH+S GL+   +MPS++   EM+++          S+ T +RL++E  QR  ++ KI  LDEKI IE+ SLQAKM++M+ EM    DL+ LR+ A E+   L E+ + Y++R    + Q     A  E AK++L
Sbjct:   87 KMLAKVKADTDRSKQMDMQIKDMRGENRKAEQVLAELTQDLTDRSNGNNEKDKYEKLYQRDREMSEFIDTFDQTQGEIKNDQDGTQSNIVGLLEHISSGLDAEGSMPSKERLSEMKDEASFKERQLESSQATMQRLQQERTQRVAEMEKIQNLDEKIKIELSSLQAKMDSMKDEMSSFDDLEGLRQRALESKTYLQEQLDSYQKRTKTSKEQVKGLSASYESAKKQL 313          
BLAST of mRNA_M-pyrifera_M_contig82802.19349.1 vs. uniprot
Match: A0A0P1B0N8_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B0N8_PLAHL)

HSP 1 Score: 122 bits (306), Expect = 1.260e-28
Identity = 94/235 (40.00%), Postives = 129/235 (54.89%), Query Frame = 1
Query:    1 ARERLLAKVKRDNGRIQELRGEAXXXXXLLERRRRALRDVEADIAERQSGGGGEDKFEALFRRDQEMTEFLDRMGDAMGREEAEQRRARETIVALLEHVSVGLERGSAMPSRQEAG--EMREDXXXXXXXXXESKETEERLREELAQRKEDLRKIDTLDEKIGIEMRSLQAKMETMRLEMPRLGDLDALRE--AATEAHATLAEKQEGYRRRRDALRAQAAAADAELEGAKERLA 693
            AR  LLAKVK D  +I+ L G         +   +AL DV++++ ER  G     K+EALF +D+EMT FL+        E   QR A+  IV LLEH+S G+ +   +P        EMR D          S  T++RL  EL +R+E+L K++TLD+KI +E+ SL  KMETM  +M   G LDAL+E  A T+ H    +KQ  Y  RRDA+R Q  A  A++E  K  +A
Sbjct:  228 ARAVLLAKVKDDKAKIEALDGTLQTVLAEKQELIKALADVQSELDERAGGSDPTQKYEALFAKDKEMTTFLEAFPAKKEAELQAQRTAQNVIVQLLEHISSGMAKEDKLPGTNAINLEEMRHDLTFKERQLESSMTTKQRLTMELQKRQEELDKVNTLDDKIALELSSLSEKMETMTTDMKEFGKLDALQEVHAQTKQHLLRLKKQ--YIGRRDAMRQQITALSAQVENVKHEIA 460          
BLAST of mRNA_M-pyrifera_M_contig82802.19349.1 vs. uniprot
Match: A0A7S2WUI2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUI2_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.790e-27
Identity = 85/228 (37.28%), Postives = 127/228 (55.70%), Query Frame = 1
Query:    7 ERLLAKVKRDNGRIQELRGEAXXXXXLLERRRRALRDVEADIAERQSGGGGEDKFEALFRRDQEMTEFLDRMGDAMGREEAEQRRARETIVALLEHVSVGLERGSAMPSRQEAGEMREDXXXXXXXXXESKETEERLREELAQRKEDLRKIDTLDEKIGIEMRSLQAKMETMRLEMPRLGDLDALREAATEAHATLAEKQEGYRRRRDALRAQAAAADAELEGAKERL 690
            +R+LAKVK DN R   L  E         R+ + + +++A+++    G   +DK+E L++RD+EMTEF+D   +       EQ+ A+ETIV LL H+S GLE    MPS++   EM ++          S+ T +RL++E   R E++ KI  LDEKIG+E+  L+ KME+M  EM    DLD LR  A E    L ++ + Y +R  A R Q A    + E  K++L
Sbjct:  291 QRMLAKVKADNARAAALDEEIKQLRDESRRQEQTVSELKAEVSN--GGKSDKDKYEKLYQRDREMTEFIDGFDETKKAILNEQKEAQETIVGLLAHISKGLEAEGNMPSQERLQEMHDEASFKEKQLESSQATMQRLQKERELRLEEMEKIKNLDEKIGVELEMLRIKMESMSTEMVAFDDLDDLRRRAAETKKFLNQQFDTYGKRMKAARDQVAGVRRKYESTKKQL 516          
BLAST of mRNA_M-pyrifera_M_contig82802.19349.1 vs. uniprot
Match: A0A421GI98_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GI98_9STRA)

HSP 1 Score: 119 bits (297), Expect = 4.560e-27
Identity = 89/228 (39.04%), Postives = 128/228 (56.14%), Query Frame = 1
Query:    1 ARERLLAKVKRDNGRIQELRGEAXXXXXLLERRRRALRDVEADIAERQSGGGGEDKFEALFRRDQEMTEFLDRMGDAMGREEAEQRRARETIVALLEHVSVGLERGSAMPSRQEAG--EMREDXXXXXXXXXESKETEERLREELAQRKEDLRKIDTLDEKIGIEMRSLQAKMETMRLEMPRLGDLDALRE--AATEAHATLAEKQEGYRRRRDALRAQAAAADAELE 672
            AR  LLAKVK D  +++ L G         +   +AL D+++D+ ER SG     K+EALF +D+EMTEFL+        E   QR A+  I+ LLEH+S G+ +   +P    A   EMR+D          S  T++RL  EL +R+ +L K++TLD KI +E+ SL  K++TM  +M   G LD+L+E  A T+ H    +KQ  Y  RRDA+R Q  A  ++LE
Sbjct:  448 ARAVLLAKVKDDKSKMEALEGVLQEAAAEKQELNKALADLQSDLDERASGSDPAHKYEALFAKDKEMTEFLELFPAKKEAEVQSQRAAQGVIIQLLEHISAGMAKEDKLPGTNAANLEEMRKDLTFKERQLESSVTTKQRLTMELQKRQAELDKVNTLDAKIALELSSLLQKVDTMTADMTEFGKLDSLQEVHAQTKQHLLRLKKQ--YIGRRDAMRQQVTALSSQLE 673          
BLAST of mRNA_M-pyrifera_M_contig82802.19349.1 vs. uniprot
Match: A0A0G4HKF7_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HKF7_9ALVE)

HSP 1 Score: 103 bits (257), Expect = 8.540e-22
Identity = 80/227 (35.24%), Postives = 126/227 (55.51%), Query Frame = 1
Query:    4 RERLLAKVKRDNGRIQELRGEAXXXXXLLERRRRALRDVEADIAERQSGGGGEDKFEALFRRDQEMTEFLDRMGDAMGREEAEQRRARETIVALLEHVSVGLERGSAMPSRQEAGEMREDXXXXXXXXXESKETEERLREELAQRKEDLRKIDTLDEKIGIEMRSLQAKMETMRLEMP-RLGDLDALREAATEAHATLAEKQEGYRRRRDALRAQAAAADAELEGAK 681
            RE L+ KVK DN  I     +       +E+ +R L +V+AD+ E   GGG   K++ LF +D+EMTEF+    D   +EE+     ++++V+LLE +S   +R + +P+ ++  ++R++          SK T ERL+ EL +R  +LR+I  +DEKI +E+ +L  K+E M+ E+  +    D LR AA       AE+Q    RRRD L A+A A    +E AK
Sbjct:  338 RELLMQKVKEDNAAILAAERDLETERNEVEKLQRGLAEVQADV-EDTKGGGKLQKYQVLFSKDEEMTEFIKNFDDRKEQEESAISEKQKSVVSLLESISKQAKRENNLPTFEKVADVRDEIDFKNQQLENSKLTHERLQGELEKRTSELRRIADIDEKINVELSTLGKKIEVMKDELANKFSSTDELRAAA-------AEEQTALERRRDLLTARAPAVKRHMEEAK 556          
BLAST of mRNA_M-pyrifera_M_contig82802.19349.1 vs. uniprot
Match: A0A0M0J8B7_9EUKA (Intraflagellar transport protein 74-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J8B7_9EUKA)

HSP 1 Score: 95.5 bits (236), Expect = 5.440e-19
Identity = 75/232 (32.33%), Postives = 126/232 (54.31%), Query Frame = 1
Query:    4 RERLLAKVKRDNGRIQELRGEAXXXXXLLERRRRALRDVEADIAERQSGGGGEDKFEALFRRDQEMTEFLDRMGDAMGREEAEQRRARETIVALLEHVS--VGLERGSAMPSRQEAGEMREDXXXXXXXXXESKETEERLREELAQRKEDLRKIDTLDEKIGIEMRSLQAKMETMRLEMPRLGDLDALREAATEAHATLAEKQEGYRRRRDALRAQAAAADAELEGAKERLA 693
            RE+LLA+VK DN +I E           +   ++ L  +++D+ E  +      K++ L++RD+EM+E +D       +E A+  +A+E +V LL+ +S  + ++  S   + ++  EM+ D         +S  T ERL+ ELAQRK +L KI+TLDEKIG E+  L+ K++ M  E+    DL+ALR  A +  +     +     +  AL+A+AA A    +  K++LA
Sbjct:  282 REQLLARVKADNAQIAEAEKRLSEAQEAIRAGKKRLAQLQSDMTE--ANDPKAQKYQELYQRDKEMSELIDTFDATKAKEVAKTEKAQEEVVQLLQSISRKLAMQETSGDMTDEKLAEMKSDLDFKRDAMDQSVSTSERLQRELAQRKTELEKIETLDEKIGAEIVQLEEKLKAMEEELVVYEDLNALRHKAAQQRSDALAAKADAEGKIGALKARAAQAKKNHDDLKDKLA 511          
BLAST of mRNA_M-pyrifera_M_contig82802.19349.1 vs. uniprot
Match: A0A812RHS7_9DINO (IFT74 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812RHS7_9DINO)

HSP 1 Score: 94.7 bits (234), Expect = 9.660e-19
Identity = 77/214 (35.98%), Postives = 108/214 (50.47%), Query Frame = 1
Query:    1 ARERLLAKVKRDNGRIQELRGEAXXXXXLLERRRRALRDVEADIAERQSGGGGE-DKFEALFRRDQEMTEFLDRMGDAMGREEAEQRRARETIVALLEHVSVGLERGSAMPSRQEAGEMREDXXXXXXXXXESKETEERLREELAQRKEDLRKIDTLDEKIGIEMRSLQAKMETMRLEMPRLGDLDALREAATEAHATLAEKQEGYRRRRDALR 639
            AR +LL KVK DN  IQE+  E       L R R   +++  D+ ER+SG GGE  K+EALF +DQ+MT+F+D    A  +EEA   +A++TIVALLEH+S  +ER  A+PS ++A  ++ +          SK T+ER                                   MR EMP+L D+ AL+ AA  A   L  +   +  R D+LR
Sbjct:  249 ARSKLLGKVKADNAAIQEMDKELRTKREALARARATAKELREDV-ERRSGDGGEGQKYEALFAKDQQMTQFIDSFPAAKAKEEAAHAQAQDTIVALLEHISGEVEREQALPSLEQAEALKGELKDKETELARSKATKERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARMRGEMPKLEDIPALQAAADAASDALQGQLMRFTERADSLR 461          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82802.19349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CAP2_CAFRO7.370e-3743.26Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A482RGJ2_9ARCH1.020e-3544.10Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A2R5GD01_9STRA2.520e-3240.54Intraflagellar transport protein 74-like n=1 Tax=H... [more]
A0A7S2C280_9STRA5.890e-3034.80Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A0P1B0N8_PLAHL1.260e-2840.00Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A7S2WUI2_9STRA1.790e-2737.28Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A421GI98_9STRA4.560e-2739.04Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A0G4HKF7_9ALVE8.540e-2235.24Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A0M0J8B7_9EUKA5.440e-1932.33Intraflagellar transport protein 74-like protein n... [more]
A0A812RHS7_9DINO9.660e-1935.98IFT74 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82802contigM-pyrifera_M_contig82802:1..696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue6.9e-26
Seed eggNOG ortholog325452.fgenesh_scip_prom.46568.9220
Preferred nameIFT74
KEGG koko:K19679
Hectar predicted targeting categoryother localisation
GOsGO:0002064,GO:0003334,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006355,GO:0006357,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007275,GO:0007368,GO:0007389,GO:0007507,GO:0008092,GO:0008150,GO:0008285,GO:0008544,GO:0009799,GO:0009855,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009913,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010970,GO:0015630,GO:0015631,GO:0016043,GO:0019219,GO:0019222,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030155,GO:0030216,GO:0030705,GO:0030855,GO:0030990,GO:0030992,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031503,GO:0031514,GO:0032501,GO:0032502,GO:0032991,GO:0033628,GO:0033630,GO:0035735,GO:0042073,GO:0042127,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043588,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045785,GO:0045893,GO:0045935,GO:0045944,GO:0046907,GO:0048468,GO:0048487,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048731,GO:0048856,GO:0048869,GO:0050678,GO:0050680,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0060271,GO:0060429,GO:0065007,GO:0070925,GO:0071840,GO:0072359,GO:0080090,GO:0097542,GO:0099111,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902680,GO:1903506,GO:1903508,GO:1905515,GO:2000112,GO:2001141
EggNOG free text desc.beta-tubulin binding
EggNOG OGs28JR0@1,2QS4E@2759,3QBR8@4776
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size696
Cds size696
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816735.0358772-CDS-M-pyrifera_M_contig82802:0..6961622816735.0358772-CDS-M-pyrifera_M_contig82802:0..696Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82802 1..696 -
1692278147.452449-CDS-M-pyrifera_M_contig82802:0..6961692278147.452449-CDS-M-pyrifera_M_contig82802:0..696Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82802 1..696 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82802.19349.1prot_M-pyrifera_M_contig82802.19349.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82802 1..696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82802.19349.1

>prot_M-pyrifera_M_contig82802.19349.1 ID=prot_M-pyrifera_M_contig82802.19349.1|Name=mRNA_M-pyrifera_M_contig82802.19349.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=232bp
ARERLLAKVKRDNGRIQELRGEAEELRGLLERRRRALRDVEADIAERQSG
GGGEDKFEALFRRDQEMTEFLDRMGDAMGREEAEQRRARETIVALLEHVS
VGLERGSAMPSRQEAGEMREDLGDKERELGESKETEERLREELAQRKEDL
RKIDTLDEKIGIEMRSLQAKMETMRLEMPRLGDLDALREAATEAHATLAE
KQEGYRRRRDALRAQAAAADAELEGAKERLAS
back to top

mRNA from alignment at M-pyrifera_M_contig82802:1..696-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82802.19349.1 ID=mRNA_M-pyrifera_M_contig82802.19349.1|Name=mRNA_M-pyrifera_M_contig82802.19349.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig82802:1..696- (Macrocystis pyrifera P11B4 male)
GCTCGGGAGCGTTTGCTGGCCAAGGTGAAGCGTGACAACGGTCGGATCCA GGAGCTCCGTGGCGAGGCGGAGGAGCTTCGCGGTTTGCTGGAGCGTCGTC GTCGTGCGTTGCGGGACGTGGAGGCTGACATAGCGGAGCGTCAGAGCGGA GGCGGCGGGGAGGACAAGTTCGAGGCCTTGTTTCGCCGGGACCAGGAGAT GACCGAGTTTTTGGACCGTATGGGCGACGCGATGGGTCGTGAGGAGGCGG AGCAGCGTCGGGCTCGCGAGACGATTGTGGCCTTGCTGGAGCATGTGTCA GTTGGGTTGGAGCGTGGCAGCGCCATGCCTTCGCGGCAAGAGGCTGGGGA GATGCGAGAGGATTTGGGGGACAAGGAGCGGGAGCTTGGGGAGAGCAAGG AGACGGAGGAGCGGCTTCGCGAAGAGCTTGCGCAGCGCAAGGAAGACCTG CGGAAAATCGATACGTTGGACGAGAAGATTGGCATCGAAATGCGATCCTT GCAAGCCAAGATGGAAACCATGCGGCTCGAGATGCCTCGCCTGGGCGATC TGGATGCGCTGCGAGAGGCTGCCACCGAGGCCCATGCGACGTTGGCGGAG AAGCAGGAGGGGTACAGGCGCAGAAGAGATGCGCTGCGTGCCCAGGCTGC TGCTGCTGATGCCGAGTTGGAAGGAGCCAAGGAGAGGCTTGCGTCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig82802:1..696-

>mRNA_M-pyrifera_M_contig82802.19349.1 ID=mRNA_M-pyrifera_M_contig82802.19349.1|Name=mRNA_M-pyrifera_M_contig82802.19349.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1392bp|location=Sequence derived from alignment at M-pyrifera_M_contig82802:1..696- (Macrocystis pyrifera P11B4 male)
GCTCGGGAGCGTTTGCTGGCCAAGGTGAAGCGTGACAACGGTCGGATCCA
GGAGCTCCGTGGCGAGGCGGAGGAGCTTCGCGGTTTGCTGGAGCGTCGTC
GTCGTGCGTTGCGGGACGTGGAGGCTGACATAGCGGAGCGTCAGAGCGGA
GGCGGCGGGGAGGACAAGTTCGAGGCCTTGTTTCGCCGGGACCAGGAGAT
GACCGAGTTTTTGGACCGTATGGGCGACGCGATGGGTCGTGAGGAGGCGG
AGCAGCGTCGGGCTCGCGAGACGATTGTGGCCTTGCTGGAGCATGTGTCA
GTTGGGTTGGAGCGTGGCAGCGCCATGCCTTCGCGGCAAGAGGCTGGGGA
GATGCGAGAGGATTTGGGGGACAAGGAGCGGGAGCTTGGGGAGAGCAAGG
AGACGGAGGAGCGGCTTCGCGAAGAGCTTGCGCAGCGCAAGGAAGACCTG
CGGAAAATCGATACGTTGGACGAGAAGATTGGCATCGAAATGCGATCCTT
GCAAGCCAAGATGGAAACCATGCGGCTCGAGATGCCTCGCCTGGGCGATC
TGGATGCGCTGCGAGAGGCTGCCACCGAGGCCCATGCGACGTTGGCGGAG
AAGCAGGAGGGGTACAGGCGCAGAAGAGATGCGCTGCGTGCCCAGGCTGC
TGCTGCTGATGCCGAGTTGGAAGGAGCCAAGGAGAGGCTTGCGTCCGCTC
GGGAGCGTTTGCTGGCCAAGGTGAAGCGTGACAACGGTCGGATCCAGGAG
CTCCGTGGCGAGGCGGAGGAGCTTCGCGGTTTGCTGGAGCGTCGTCGTCG
TGCGTTGCGGGACGTGGAGGCTGACATAGCGGAGCGTCAGAGCGGAGGCG
GCGGGGAGGACAAGTTCGAGGCCTTGTTTCGCCGGGACCAGGAGATGACC
GAGTTTTTGGACCGTATGGGCGACGCGATGGGTCGTGAGGAGGCGGAGCA
GCGTCGGGCTCGCGAGACGATTGTGGCCTTGCTGGAGCATGTGTCAGTTG
GGTTGGAGCGTGGCAGCGCCATGCCTTCGCGGCAAGAGGCTGGGGAGATG
CGAGAGGATTTGGGGGACAAGGAGCGGGAGCTTGGGGAGAGCAAGGAGAC
GGAGGAGCGGCTTCGCGAAGAGCTTGCGCAGCGCAAGGAAGACCTGCGGA
AAATCGATACGTTGGACGAGAAGATTGGCATCGAAATGCGATCCTTGCAA
GCCAAGATGGAAACCATGCGGCTCGAGATGCCTCGCCTGGGCGATCTGGA
TGCGCTGCGAGAGGCTGCCACCGAGGCCCATGCGACGTTGGCGGAGAAGC
AGGAGGGGTACAGGCGCAGAAGAGATGCGCTGCGTGCCCAGGCTGCTGCT
GCTGATGCCGAGTTGGAAGGAGCCAAGGAGAGGCTTGCGTCC
back to top