mRNA_M-pyrifera_M_contig82791.19346.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82791.19346.1
Unique NamemRNA_M-pyrifera_M_contig82791.19346.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82791.19346.1 vs. uniprot
Match: A0A7Y2DLC7_9ACTN (NADH-quinone oxidoreductase subunit N n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DLC7_9ACTN)

HSP 1 Score: 285 bits (729), Expect = 7.280e-90
Identity = 160/265 (60.38%), Postives = 190/265 (71.70%), Query Frame = 1
Query:    1 SAVPFHFWTPDVYQGAPTPIVAFMASAVKVAGFAALVRVFVVAFSERGGDWRPLVGALAIFSILLGSVMAIVQTDVKRMLAYSSISHAGFMLIGVHAAGSASGDVALAGGRSVLFYMLAYTIAVAGTFAVVTAVSGYGDSNTSLDAFKGLSGRSPVLAAMMVVLLFSQAGIPFTSGFFAKFRVIVAAADGEQYVMAGIAMLGSVIGAFLYLRIVVAMF-TDTGDAAAEGDEPETAVVVVEPKPAPTVLLAITLAVAGTLLLGIWP 792
            SA PFH WTPDVYQGAPTPIV FMASAVKVAGFA   RVF+ AF   G DWRP+VGA+A+ SI++GS +AI Q +VKRMLAYSSISHAGF+LIG++AAGSA   VA+ G RSVLFY+ AYT+ V G+F V T V   GD    L  + GLS R P LA ++VVLLF+QAGIPFTSGF+AKF VI AA  GE YV+AG AM+ +V+GA+LYL+++V+MF   T D AA GDE   A         P    AI  AV  TLL G+ P
Sbjct:  241 SAAPFHLWTPDVYQGAPTPIVGFMASAVKVAGFAGFARVFLSAFMPVGADWRPVVGAMALLSIVIGSFLAIRQDNVKRMLAYSSISHAGFILIGLYAAGSADDGVAVLGSRSVLFYLAAYTVMVGGSFGVATLVGRRGDGAHDLSDYSGLSTRKPALAGLLVVLLFAQAGIPFTSGFWAKFGVIEAAVRGEHYVLAGAAMVAAVVGAYLYLKVIVSMFLAPTTDVAASGDEAALATADGSIALVPAATAAIAAAVVITLLWGVLP 505          
BLAST of mRNA_M-pyrifera_M_contig82791.19346.1 vs. uniprot
Match: A0A7Y2NA89_9ACTN (NADH-quinone oxidoreductase subunit N n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2NA89_9ACTN)

HSP 1 Score: 276 bits (707), Expect = 1.820e-86
Identity = 162/290 (55.86%), Postives = 200/290 (68.97%), Query Frame = 1
Query:    1 SAVPFHFWTPDVYQGAPTPIVAFMASAVKVAGFAALVRVFVVAFSERGGDWRPLVGALAIFSILLGSVMAIVQTDVKRMLAYSSISHAGFMLIGVHAAGSASGDVALAGGRSVLFYMLAYTIAVAGTFAVVTAVSGYGDSNTSLDAFKGLSGRSPVLAAMMVVLLFSQAGIPFTSGFFAKFRVIVAAADGEQYVMAGIAMLGSVIGAFLYLRIVVAMFTDTG----DAAAEGDE-----PETAVVVVEPKPA--PTVLLAITLAVAGTLLLGIWPAVIDTPLGDGARSLL 837
            SA PFH WTPDVYQGAPTP+V FMASAVKV GFA L+RVF+  F   G DWRP+VGA+A+ SI++GS +AI Q +VKRMLAYSSISHAGF+LIG+ AAGS + +VA  G RSVLFY+ AYT+ V G+F VVT V G GD    L  + GL+ RSP+LA   +VLLF+QAGIPFTSGF AKF VI AA   E YV+AG+AM+ +V+GA+LYLRI+  MF   G      AA  D      P+ AV+  + + +  P  + AI +AVA TLL G  P +    L D A + L
Sbjct:  240 SAAPFHLWTPDVYQGAPTPVVGFMASAVKVGGFAGLLRVFLAGFGRLGDDWRPVVGAMALLSIVIGSFLAIRQDNVKRMLAYSSISHAGFILIGLFAAGSRNAEVAQLGTRSVLFYLFAYTVMVVGSFGVVTLVGGRGDGKHDLSDYAGLAQRSPILAGFFLVLLFAQAGIPFTSGFLAKFGVIQAAVRDEAYVLAGVAMVAAVVGAYLYLRIIKTMFFSDGAHTVPVAAALDTNVEATPDGAVIAPDEQISLPPAAVAAILVAVAITLLWGFAPNIGGDILRDAAATFL 529          
BLAST of mRNA_M-pyrifera_M_contig82791.19346.1 vs. uniprot
Match: A0A538CVX3_9ACTN (NADH-quinone oxidoreductase subunit N n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538CVX3_9ACTN)

HSP 1 Score: 244 bits (623), Expect = 6.360e-77
Identity = 149/280 (53.21%), Postives = 190/280 (67.86%), Query Frame = 1
Query:    1 SAVPFHFWTPDVYQGAPTPIVAFMASAVKVAGFAALVRVFVVAFSERGGDWRPLVGALAIFSILLGSVMAIVQTDVKRMLAYSSISHAGFMLIGVHAAGSASGDVALAGGRSVLFYMLAYTIAVAGTFAVVTAVSGYGDSNTSLDAFKGLSGRSPVLAAMMVVLLFSQAGIPFTSGFFAKFRVIVAAADGEQYVMAGIAMLGSVIGAFLYLRIVVAMFTDTGDAAAEGDEPETAVVVVEPKPAPTVL-LAITLAVAGTLLLGIWPAVIDTPLGDGARSLL 837
            +AVPFH W+PDVYQGAPTP VAFMA+AVK A FAAL+RVFV  F+    DW+P V ALA+ ++L+GS +A+VQTDVKRMLAYSSISHAGF+L+GV AA SA G        S LFY+ AYT  V GTF VVT V   GD+  SL  ++GL  R PVLA    +LL +QAG+P T+GFFAKF VI AA D   Y +A +AM+ SVI AFLYLRIV+AM+   G+A A+ D P  A+        P++  +AI +AV  T++ G  P +++    D   ++L
Sbjct:   18 AAVPFHSWSPDVYQGAPTPAVAFMAAAVKAASFAALLRVFVAGFALYSDDWQPAVYALAVVTLLVGSTIAVVQTDVKRMLAYSSISHAGFILVGVEAA-SAKGTA------SCLFYLAAYTFMVIGTFGVVTLVGRTGDARHSLTDYRGLGSRRPVLAFAFTLLLLAQAGVPLTTGFFAKFYVISAAIDVHSYWLAIVAMVASVIAAFLYLRIVLAMYA--GEAEAD-DAPRVAI--------PSLAGVAIVIAVGVTVVFGFLPQILEHWARDAVPAIL 279          
BLAST of mRNA_M-pyrifera_M_contig82791.19346.1 vs. uniprot
Match: A0A2D6M3C6_9PROT (NADH-quinone oxidoreductase subunit N n=5 Tax=root TaxID=1 RepID=A0A2D6M3C6_9PROT)

HSP 1 Score: 250 bits (638), Expect = 1.560e-76
Identity = 145/276 (52.54%), Postives = 184/276 (66.67%), Query Frame = 1
Query:    1 SAVPFHFWTPDVYQGAPTPIVAFMASAVKVAGFAALVRVFVVAFSERGGDWRPLVGALAIFSILLGSVMAIVQTDVKRMLAYSSISHAGFMLIGVHAAGSASGDVALAGGRSVLFYMLAYTIAVAGTFAVVTAVSGYGDSNTSLDAFKGLSGRSPVLAAMMVVLLFSQAGIPFTSGFFAKFRVIVAAADGEQYVMAGIAMLGSVIGAFLYLRIVVAMFTDTGDAAAEGDEPETAVVVVEPKPAPTVLLAITLAVAGTLLLGIWPAVIDTPLGDGAR 828
            +AVPFH W PDVYQGAPTP+VA+MA+ VK AGFAAL+RVFV+ F    G+W+P V  LAI ++L GS++A+VQTDVKRMLAYSSI+HAGF+L+GV AA          G  +VL Y+ AYT+   G+FAVVT V G GD    LDA++GL  R P LA    VLL  QAG+PFT+GF AKF VI AAA+G  Y +AG+AM+ + + AF+YLRI+VAM+ + G     G E +T      P+      + IT +VA  L LG+ P     PL D AR
Sbjct:  234 AAVPFHAWAPDVYQGAPTPVVAWMAAGVKAAGFAALLRVFVLTFGSWSGEWQPAVWGLAILTVLGGSIVAVVQTDVKRMLAYSSIAHAGFLLVGVQAASDR-------GTAAVLAYLGAYTLLACGSFAVVTVVGGTGDDRHGLDAYRGLGARRPWLAGAFAVLLLGQAGVPFTAGFVAKFGVIAAAAEGRSYALAGVAMVAAAVAAFVYLRILVAMYIEDG-----GPEDDTDATPWGPR------IVITASVALVLFLGVVPG----PLVDLAR 487          
BLAST of mRNA_M-pyrifera_M_contig82791.19346.1 vs. uniprot
Match: A0A6G2KL54_9ACTN (NADH-quinone oxidoreductase subunit N n=3 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6G2KL54_9ACTN)

HSP 1 Score: 250 bits (638), Expect = 1.720e-76
Identity = 148/264 (56.06%), Postives = 183/264 (69.32%), Query Frame = 1
Query:    1 SAVPFHFWTPDVYQGAPTPIVAFMASAVKVAGFAALVRVFVVAFSERGGDWRPLVGALAIFSILLGSVMAIVQTDVKRMLAYSSISHAGFMLIGVHAAGSASGDVALAGGRSVLFYMLAYTIAVAGTFAVVTAVSGYGDSNTSLDAFKGLSGRSPVLAAMMVVLLFSQAGIPFTSGFFAKFRVIVAAADGEQYVMAGIAMLGSVIGAFLYLRIVVAMFTDTGDAAAEGDEPETAVVVVEPKPAPTVLLAITLAVAGTLLLGIWP 792
            +AVPFH WTPDVYQGAP+P+V++MA+ VK AGFAA++RVF   F     DW+P+V  LAI S+ +GS++AIVQTDVKR+LAYSSISHAGF+L+GV AA   + D    G  SVLFY+ AY     G+FAV+T VSG GD  T LD+ +GL+ R P+LAA   VLL SQAGIPFT GF+AKF VI AA D   + +A IAML +V+ AFLYLRIVVAMF D  D       P+   + +   PA    LAIT+ V  TL  GI+P
Sbjct:  235 AAVPFHAWTPDVYQGAPSPVVSYMAAGVKAAGFAAMLRVFFGGFGGLADDWQPVVFGLAIASLAVGSMLAIVQTDVKRILAYSSISHAGFILVGVQAA---TDD----GVASVLFYLAAYAAMAIGSFAVITLVSGPGDEGTGLDSLRGLAARHPLLAAAFTVLLLSQAGIPFTVGFWAKFEVITAAVDARSFWLAVIAMLAAVVAAFLYLRIVVAMFLDAPD-------PDAPRLRIPRGPA----LAITIVVLFTLAFGIYP 480          
BLAST of mRNA_M-pyrifera_M_contig82791.19346.1 vs. uniprot
Match: A0A2E8LIT1_9ACTN (NADH-quinone oxidoreductase subunit N n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8LIT1_9ACTN)

HSP 1 Score: 249 bits (637), Expect = 2.430e-76
Identity = 146/276 (52.90%), Postives = 185/276 (67.03%), Query Frame = 1
Query:    1 SAVPFHFWTPDVYQGAPTPIVAFMASAVKVAGFAALVRVFVVAFSERGGDWRPLVGALAIFSILLGSVMAIVQTDVKRMLAYSSISHAGFMLIGVHAAGSASGDVALAGGRSVLFYMLAYTIAVAGTFAVVTAVSGYGDSNTSLDAFKGLSGRSPVLAAMMVVLLFSQAGIPFTSGFFAKFRVIVAAADGEQYVMAGIAMLGSVIGAFLYLRIVVAMFTDTGDAAAEGDEPETAVVVVEPKPAPTVLLAITLAVAGTLLLGIWPAVIDTPLGDGAR 828
            +AVPFH WTPDVYQGAPTP+VA+MA+ VK AGFAAL+RVFV+ F    G+W P V  LA+ ++L GSV+A+VQ DVKRMLAYSSI+HAGF+L+GV A+          G  +VL Y+ AYT+   G+FAV+T V G GD    LDA++GL+ R P LA    VLL  QAG+PFT+GF AKF VI AA +GE Y +AG+AML + + AF+YLRI+VAM+ +      +GD  E A  V      P   L IT+AV   L+LG+ P     PL D AR
Sbjct:  234 AAVPFHAWTPDVYQGAPTPVVAWMAAGVKAAGFAALLRVFVLTFGSWSGEWGPAVWGLAVLTVLGGSVVAVVQVDVKRMLAYSSIAHAGFLLVGVQASSER-------GTAAVLAYLGAYTLLACGSFAVLTVVGGTGDDRHGLDAYRGLAARRPWLAGAFAVLLLGQAGVPFTAGFVAKFGVIAAAVEGESYWLAGVAMLAAAVAAFVYLRIIVAMYLE-----GDGDHEEAAAEVEAAPWGPR--LVITVAVLLVLVLGVVPG----PLVDLAR 491          
BLAST of mRNA_M-pyrifera_M_contig82791.19346.1 vs. uniprot
Match: A0A3N5KNM5_9ACTN (NADH-quinone oxidoreductase subunit N (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A3N5KNM5_9ACTN)

HSP 1 Score: 245 bits (626), Expect = 3.570e-76
Identity = 136/236 (57.63%), Postives = 165/236 (69.92%), Query Frame = 1
Query:    1 SAVPFHFWTPDVYQGAPTPIVAFMASAVKVAGFAALVRVFVVAFSERGGDWRPLVGALAIFSILLGSVMAIVQTDVKRMLAYSSISHAGFMLIGVHAAGSASGDVALAGGRSVLFYMLAYTIAVAGTFAVVTAVSGYGDSNTSLDAFKGLSGRSPVLAAMMVVLLFSQAGIPFTSGFFAKFRVIVAAADGEQYVMAGIAMLGSVIGAFLYLRIVVAMF-TDTGDAAAEGDEPETAV 705
            +AVPFH W PDVYQG+PTP+  FMAS  K AGFAAL+RVFVVAF     DW+P+V ALA+ ++++GSV+A+VQTDVKRMLAYSSISHAGF+L+GV AA          G  + LFY+LAYT  V G+FA+V  V   GDSN  L  FKGLS R P LA    V L +QAG+P TSGFFAKF VI AA D E Y +A IAM+ +VI AFLYLR++V M+ ++  D A E   P   V
Sbjct:  106 AAVPFHTWVPDVYQGSPTPVTGFMASVAKAAGFAALLRVFVVAFETYELDWKPMVWALAVLTMVVGSVLAVVQTDVKRMLAYSSISHAGFVLVGVQAASEL-------GTGAALFYLLAYTFMVLGSFAIVALVGPPGDSNHDLSTFKGLSRRQPALAFAFTVFLLAQAGVPLTSGFFAKFYVIDAAVDAESYALAVIAMVSAVIAAFLYLRVIVVMYLSEPEDGAVEPAGPRVRV 334          
BLAST of mRNA_M-pyrifera_M_contig82791.19346.1 vs. uniprot
Match: A0A6I3HJG8_9ACTN (NADH-quinone oxidoreductase subunit N n=3 Tax=root TaxID=1 RepID=A0A6I3HJG8_9ACTN)

HSP 1 Score: 248 bits (633), Expect = 8.910e-76
Identity = 139/264 (52.65%), Postives = 187/264 (70.83%), Query Frame = 1
Query:    1 SAVPFHFWTPDVYQGAPTPIVAFMASAVKVAGFAALVRVFVVAFSERGGDWRPLVGALAIFSILLGSVMAIVQTDVKRMLAYSSISHAGFMLIGVHAAGSASGDVALAGGRSVLFYMLAYTIAVAGTFAVVTAVSGYGDSNTSLDAFKGLSGRSPVLAAMMVVLLFSQAGIPFTSGFFAKFRVIVAAADGEQYVMAGIAMLGSVIGAFLYLRIVVAMFTDTGDAAAEGDEPETAVVVVEPKPAPTVLLAITLAVAGTLLLGIWP 792
            SA PFH WTPDVY+GAPTP+ AFMAS  KVA FAAL+RV +V   +R  DWRP+V ALA+ ++ +GS++A+VQT+VKRMLAYSSISHAGF+L+GV AAG  SGD    G  S + Y+  YT+ V G+FA+V A+SG  D  T+L  FKGL+ R P LA    VLLF+QAG+P T+GF AKF VI +A + + YV+A  AM+ +VIGA+LYLRI V+M+ +  +  +E +      + V+P     V++ I LAV  TL++G++P
Sbjct:  235 SAAPFHIWTPDVYEGAPTPVTAFMASVGKVAAFAALMRVLMVGLEQRADDWRPVVWALALLTVFVGSILAVVQTNVKRMLAYSSISHAGFILVGVEAAGHMSGD----GIASSMNYLAIYTVLVMGSFAIVLAMSGNSDGETNLSDFKGLAKRRPALALAFTVLLFAQAGVPLTAGFVAKFAVIKSAVEVDSYVLAVAAMVAAVIGAYLYLRIAVSMWLE--EPVSENE------ISVDP----AVVVVIALAVVATLVVGLFP 482          
BLAST of mRNA_M-pyrifera_M_contig82791.19346.1 vs. uniprot
Match: A0A6I2X8I2_9ACTN (NADH-quinone oxidoreductase subunit N n=2 Tax=root TaxID=1 RepID=A0A6I2X8I2_9ACTN)

HSP 1 Score: 247 bits (631), Expect = 2.060e-75
Identity = 146/267 (54.68%), Postives = 184/267 (68.91%), Query Frame = 1
Query:    1 SAVPFHFWTPDVYQGAPTPIVAFMASAVKVAGFAALVRVFVVAFSERGGDWRPLVGALAIFSILLGSVMAIVQTDVKRMLAYSSISHAGFMLIGVHAAGSASGDVALAGGRSVLFYMLAYTIAVAGTFAVVTAVSGYGDSNTSLDAFKGLSGRSPVLAAMMVVLLFSQAGIPFTSGFFAKFRVIVAAADGEQYVMAGIAMLGSVIGAFLYLRIVVAMFTDTGDAAAEGDEPETAVVVVEPKPAPTVLLAITLAVAGTLLLGIWPAVI 801
            S VPFH WTPDVYQGAPTP+ A M S  KVA F+AL+RVF++A   R  DWRP +  LA+ ++++GS++A+VQTDVKRMLAYSSISHAGF+L+G+ AA       +  G  S + Y+  Y+I V GTFAVV+ V+G GD+ TSLDAFKGL  + PVLA  M VLL +QAG+P TSGF AKF +I AA   E Y +A  AML +VI AFLYLRI+V+M+          D  + A VVV      +V LAITLAV  TLL+GI P ++
Sbjct:  240 SLVPFHVWTPDVYQGAPTPVTALMGSVGKVAAFSALIRVFMIALPSRIDDWRPAILVLALLTLVVGSLLAVVQTDVKRMLAYSSISHAGFILVGLEAAAHIGHADSHLGISSAMGYLFIYSILVIGTFAVVSVVAGAGDAATSLDAFKGLGKKRPVLALGMTVLLLAQAGVPLTSGFVAKFGIIRAAVSVESYALAVAAMLAAVIAAFLYLRIMVSMWLS--------DPADDAPVVVSK----SVGLAITLAVVATLLIGILPGLL 494          
BLAST of mRNA_M-pyrifera_M_contig82791.19346.1 vs. uniprot
Match: A0A6I2WWG2_9ACTN (NADH-quinone oxidoreductase subunit N n=4 Tax=root TaxID=1 RepID=A0A6I2WWG2_9ACTN)

HSP 1 Score: 247 bits (631), Expect = 2.580e-75
Identity = 134/229 (58.52%), Postives = 166/229 (72.49%), Query Frame = 1
Query:    1 SAVPFHFWTPDVYQGAPTPIVAFMASAVKVAGFAALVRVFVVAFSERGGDWRPLVGALAIFSILLGSVMAIVQTDVKRMLAYSSISHAGFMLIGVHAA--GSASGDVALAGGRSVLFYMLAYTIAVAGTFAVVTAVSGYGDSNTSLDAFKGLSGRSPVLAAMMVVLLFSQAGIPFTSGFFAKFRVIVAAADGEQYVMAGIAMLGSVIGAFLYLRIVVAMFTDTGDAAAE 681
            +AVPFH WTPDVYQGAPTP+  FMASA K A F AL+R  V++  E   DWRP +  LAI ++++GS +A+VQT+VKRMLAYSSISHAGF+L+G+ AA  G  SGD  +A   SVLFY+L Y + V+GTFAV T V   GD    LD+++GL  + PVLA  + V L +QAG+P TSGF AKF VI AAAD   Y +A IAML +VIGAFLYLRI+V+MF + GDA  E
Sbjct:  246 AAVPFHSWTPDVYQGAPTPVTGFMASAAKAAAFGALLRSVVLSMPELRDDWRPAIWVLAILTLVIGSTLAVVQTNVKRMLAYSSISHAGFILVGIEAAAHGGESGDRGIA---SVLFYLLTYAVLVSGTFAVSTLVGRSGDGAHGLDSYRGLGRQRPVLALTLTVFLLAQAGVPLTSGFVAKFSVITAAADASSYAIAIIAMLAAVIGAFLYLRIIVSMFLEDGDAEGE 471          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82791.19346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2DLC7_9ACTN7.280e-9060.38NADH-quinone oxidoreductase subunit N n=1 Tax=Acid... [more]
A0A7Y2NA89_9ACTN1.820e-8655.86NADH-quinone oxidoreductase subunit N n=1 Tax=Acid... [more]
A0A538CVX3_9ACTN6.360e-7753.21NADH-quinone oxidoreductase subunit N n=1 Tax=Acti... [more]
A0A2D6M3C6_9PROT1.560e-7652.54NADH-quinone oxidoreductase subunit N n=5 Tax=root... [more]
A0A6G2KL54_9ACTN1.720e-7656.06NADH-quinone oxidoreductase subunit N n=3 Tax=Acid... [more]
A0A2E8LIT1_9ACTN2.430e-7652.90NADH-quinone oxidoreductase subunit N n=1 Tax=Acid... [more]
A0A3N5KNM5_9ACTN3.570e-7657.63NADH-quinone oxidoreductase subunit N (Fragment) n... [more]
A0A6I3HJG8_9ACTN8.910e-7652.65NADH-quinone oxidoreductase subunit N n=3 Tax=root... [more]
A0A6I2X8I2_9ACTN2.060e-7554.68NADH-quinone oxidoreductase subunit N n=2 Tax=root... [more]
A0A6I2WWG2_9ACTN2.580e-7558.52NADH-quinone oxidoreductase subunit N n=4 Tax=root... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82791contigM-pyrifera_M_contig82791:2..844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score227.6
Seed ortholog evalue7e-57
Seed eggNOG ortholog1229780.BN381_160014
Preferred namenuoN
KEGG rclassRC00061
KEGG koko:K00343
KEGG TC3.D.1
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,map00190,map01100
KEGG ModuleM00144
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944
EggNOG free text desc.NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
EggNOG OGs2GMGX@201174,3UWFY@52018,COG1007@1,COG1007@2
EC1.6.5.3
COG Functional cat.C
Best tax levelunclassified Actinobacteria (class)
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size843
Cds size843
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816734.6609046-CDS-M-pyrifera_M_contig82791:1..8441622816734.6609046-CDS-M-pyrifera_M_contig82791:1..844Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82791 2..844 +
1692278147.1785755-CDS-M-pyrifera_M_contig82791:1..8441692278147.1785755-CDS-M-pyrifera_M_contig82791:1..844Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82791 2..844 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82791.19346.1prot_M-pyrifera_M_contig82791.19346.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82791 2..844 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82791.19346.1

>prot_M-pyrifera_M_contig82791.19346.1 ID=prot_M-pyrifera_M_contig82791.19346.1|Name=mRNA_M-pyrifera_M_contig82791.19346.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=281bp
SAVPFHFWTPDVYQGAPTPIVAFMASAVKVAGFAALVRVFVVAFSERGGD
WRPLVGALAIFSILLGSVMAIVQTDVKRMLAYSSISHAGFMLIGVHAAGS
ASGDVALAGGRSVLFYMLAYTIAVAGTFAVVTAVSGYGDSNTSLDAFKGL
SGRSPVLAAMMVVLLFSQAGIPFTSGFFAKFRVIVAAADGEQYVMAGIAM
LGSVIGAFLYLRIVVAMFTDTGDAAAEGDEPETAVVVVEPKPAPTVLLAI
TLAVAGTLLLGIWPAVIDTPLGDGARSLLGL
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mRNA from alignment at M-pyrifera_M_contig82791:2..844+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82791.19346.1 ID=mRNA_M-pyrifera_M_contig82791.19346.1|Name=mRNA_M-pyrifera_M_contig82791.19346.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=843bp|location=Sequence derived from alignment at M-pyrifera_M_contig82791:2..844+ (Macrocystis pyrifera P11B4 male)
TCGGCGGTCCCGTTCCACTTCTGGACGCCAGACGTCTACCAAGGCGCCCC CACCCCGATCGTGGCGTTCATGGCCTCGGCCGTGAAGGTCGCCGGGTTTG CGGCGCTGGTTCGTGTGTTCGTGGTGGCATTCAGCGAACGAGGCGGAGAC TGGCGACCACTCGTCGGTGCCCTCGCCATCTTCTCCATCCTGCTCGGCTC GGTGATGGCCATCGTCCAGACCGACGTCAAGCGCATGCTGGCCTACTCGT CGATCTCGCACGCCGGCTTCATGCTGATCGGTGTGCACGCCGCGGGCAGC GCGAGCGGAGACGTCGCACTCGCCGGTGGGCGCTCGGTCCTGTTCTACAT GCTGGCCTACACGATCGCCGTCGCCGGAACGTTCGCCGTGGTCACCGCCG TGAGCGGGTATGGCGATTCGAACACCAGCCTCGACGCCTTCAAGGGGCTC TCGGGCCGATCTCCCGTCCTTGCGGCGATGATGGTCGTGTTGCTCTTCTC GCAGGCCGGTATCCCCTTCACCTCCGGGTTCTTCGCCAAGTTCCGAGTCA TCGTTGCCGCCGCCGACGGCGAGCAATACGTCATGGCCGGTATCGCAATG CTCGGCTCGGTCATCGGTGCCTTCCTGTACCTGCGCATCGTGGTGGCAAT GTTCACCGACACCGGTGATGCGGCGGCCGAAGGTGACGAGCCCGAGACGG CCGTCGTGGTCGTCGAACCCAAGCCCGCTCCCACCGTGCTGCTCGCCATC ACGCTGGCGGTGGCGGGAACCCTGCTGCTCGGCATCTGGCCGGCAGTGAT CGACACGCCACTGGGCGACGGCGCCCGTTCGCTGCTGGGCCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82791:2..844+

>mRNA_M-pyrifera_M_contig82791.19346.1 ID=mRNA_M-pyrifera_M_contig82791.19346.1|Name=mRNA_M-pyrifera_M_contig82791.19346.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1686bp|location=Sequence derived from alignment at M-pyrifera_M_contig82791:2..844+ (Macrocystis pyrifera P11B4 male)
TCGGCGGTCCCGTTCCACTTCTGGACGCCAGACGTCTACCAAGGCGCCCC
CACCCCGATCGTGGCGTTCATGGCCTCGGCCGTGAAGGTCGCCGGGTTTG
CGGCGCTGGTTCGTGTGTTCGTGGTGGCATTCAGCGAACGAGGCGGAGAC
TGGCGACCACTCGTCGGTGCCCTCGCCATCTTCTCCATCCTGCTCGGCTC
GGTGATGGCCATCGTCCAGACCGACGTCAAGCGCATGCTGGCCTACTCGT
CGATCTCGCACGCCGGCTTCATGCTGATCGGTGTGCACGCCGCGGGCAGC
GCGAGCGGAGACGTCGCACTCGCCGGTGGGCGCTCGGTCCTGTTCTACAT
GCTGGCCTACACGATCGCCGTCGCCGGAACGTTCGCCGTGGTCACCGCCG
TGAGCGGGTATGGCGATTCGAACACCAGCCTCGACGCCTTCAAGGGGCTC
TCGGGCCGATCTCCCGTCCTTGCGGCGATGATGGTCGTGTTGCTCTTCTC
GCAGGCCGGTATCCCCTTCACCTCCGGGTTCTTCGCCAAGTTCCGAGTCA
TCGTTGCCGCCGCCGACGGCGAGCAATACGTCATGGCCGGTATCGCAATG
CTCGGCTCGGTCATCGGTGCCTTCCTGTACCTGCGCATCGTGGTGGCAAT
GTTCACCGACACCGGTGATGCGGCGGCCGAAGGTGACGAGCCCGAGACGG
CCGTCGTGGTCGTCGAACCCAAGCCCGCTCCCACCGTGCTGCTCGCCATC
ACGCTGGCGGTGGCGGGAACCCTGCTGCTCGGCATCTGGCCGGCAGTGAT
CGACACGCCACTGGGCGACGGCGCCCGTTCGCTGCTGGGCCTCTCGGCGG
TCCCGTTCCACTTCTGGACGCCAGACGTCTACCAAGGCGCCCCCACCCCG
ATCGTGGCGTTCATGGCCTCGGCCGTGAAGGTCGCCGGGTTTGCGGCGCT
GGTTCGTGTGTTCGTGGTGGCATTCAGCGAACGAGGCGGAGACTGGCGAC
CACTCGTCGGTGCCCTCGCCATCTTCTCCATCCTGCTCGGCTCGGTGATG
GCCATCGTCCAGACCGACGTCAAGCGCATGCTGGCCTACTCGTCGATCTC
GCACGCCGGCTTCATGCTGATCGGTGTGCACGCCGCGGGCAGCGCGAGCG
GAGACGTCGCACTCGCCGGTGGGCGCTCGGTCCTGTTCTACATGCTGGCC
TACACGATCGCCGTCGCCGGAACGTTCGCCGTGGTCACCGCCGTGAGCGG
GTATGGCGATTCGAACACCAGCCTCGACGCCTTCAAGGGGCTCTCGGGCC
GATCTCCCGTCCTTGCGGCGATGATGGTCGTGTTGCTCTTCTCGCAGGCC
GGTATCCCCTTCACCTCCGGGTTCTTCGCCAAGTTCCGAGTCATCGTTGC
CGCCGCCGACGGCGAGCAATACGTCATGGCCGGTATCGCAATGCTCGGCT
CGGTCATCGGTGCCTTCCTGTACCTGCGCATCGTGGTGGCAATGTTCACC
GACACCGGTGATGCGGCGGCCGAAGGTGACGAGCCCGAGACGGCCGTCGT
GGTCGTCGAACCCAAGCCCGCTCCCACCGTGCTGCTCGCCATCACGCTGG
CGGTGGCGGGAACCCTGCTGCTCGGCATCTGGCCGGCAGTGATCGACACG
CCACTGGGCGACGGCGCCCGTTCGCTGCTGGGCCTC
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