mRNA_M-pyrifera_M_contig82786.19343.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82786.19343.1
Unique NamemRNA_M-pyrifera_M_contig82786.19343.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82786.19343.1 vs. uniprot
Match: A0A7Y2DPE1_9ACTN (Peptidoglycan DD-metalloendopeptidase family protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DPE1_9ACTN)

HSP 1 Score: 209 bits (532), Expect = 5.820e-65
Identity = 95/126 (75.40%), Postives = 105/126 (83.33%), Query Frame = 1
Query:   58 LKTCPVAGAHSFIDSWGYPRSSGRRHKGVDMMASIGTPIAAPVSGTVEHRSNRVGGRSFHLNGDDGNYYYGTHLSGYEKSGRVNAGDIIGYVGDDGNARGIPHLHFEVHPGGGSAVNPYPYVAAVC 435
            L+ CPVAGAHSFIDSWG+ RS GRRHKGVDMMA++G P+ APVSGTV HR NRVGG S+HL GDDG+YYYGTHLS Y +SG V AG +IGYVGD GNA GIPHLHFE+HP  GSA NPYP VA VC
Sbjct:  185 LEVCPVAGAHSFIDSWGFARSGGRRHKGVDMMANVGVPLVAPVSGTVSHRGNRVGGLSYHLRGDDGHYYYGTHLSAYGESGYVTAGTVIGYVGDTGNASGIPHLHFEIHPNNGSATNPYPSVAFVC 310          
BLAST of mRNA_M-pyrifera_M_contig82786.19343.1 vs. uniprot
Match: A0A7Y2II79_9ACTN (Peptidoglycan DD-metalloendopeptidase family protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2II79_9ACTN)

HSP 1 Score: 209 bits (531), Expect = 1.200e-64
Identity = 95/126 (75.40%), Postives = 106/126 (84.13%), Query Frame = 1
Query:   58 LKTCPVAGAHSFIDSWGYPRSSGRRHKGVDMMASIGTPIAAPVSGTVEHRSNRVGGRSFHLNGDDGNYYYGTHLSGYEKSGRVNAGDIIGYVGDDGNARGIPHLHFEVHPGGGSAVNPYPYVAAVC 435
            L+ CPV GAHSFIDSWG+ RS GRRHKGVD+MA+IG P+ APVSGTV+HR NRVGG S+HL+GDDGNYYYGTHLS Y +SG V AG +IGYVGD GNA GIPHLH E+HPGG SA NPYP VA VC
Sbjct:  198 LEACPVGGAHSFIDSWGFARSGGRRHKGVDIMANIGVPLLAPVSGTVKHRGNRVGGMSYHLDGDDGNYYYGTHLSAYGESGYVTAGTVIGYVGDSGNAAGIPHLHLEIHPGGRSATNPYPSVAFVC 323          
BLAST of mRNA_M-pyrifera_M_contig82786.19343.1 vs. uniprot
Match: A0A5Q2RE01_9ACTN (Peptidoglycan DD-metalloendopeptidase family protein n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RE01_9ACTN)

HSP 1 Score: 205 bits (521), Expect = 1.480e-62
Identity = 95/123 (77.24%), Postives = 101/123 (82.11%), Query Frame = 1
Query:   67 CPVAGAHSFIDSWGYPRSSGRRHKGVDMMASIGTPIAAPVSGTVEHRSNRVGGRSFHLNGDDGNYYYGTHLSGYEKSGRVNAGDIIGYVGDDGNARGIPHLHFEVHPGGGSAVNPYPYVAAVC 435
            CPVAG HSFIDSWG PRS GR HKGVDMMAS GTP+ APVSGTV HR N +GG SFHLNG DG+YYYGTHLS Y  SG+V AG +IGYVGD GNARGIPHLHFE+HP GGSAVNP P V A C
Sbjct:  253 CPVAGPHSFIDSWGAPRSGGRSHKGVDMMASTGTPVVAPVSGTVTHRGNSIGGLSFHLNGVDGHYYYGTHLSAYGASGQVQAGTVIGYVGDTGNARGIPHLHFEIHPNGGSAVNPTPTVRAAC 375          
BLAST of mRNA_M-pyrifera_M_contig82786.19343.1 vs. uniprot
Match: A0A7V9GIS7_9ACTN (Peptidoglycan DD-metalloendopeptidase family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9GIS7_9ACTN)

HSP 1 Score: 194 bits (493), Expect = 1.080e-58
Identity = 90/125 (72.00%), Postives = 99/125 (79.20%), Query Frame = 1
Query:   67 CPVAGAHSFIDSWGYPRSSGRRHKGVDMMASIGTPIAAPVSGTVEHRSNRVGGRSFHLNGDDGNYYYGTHLSGYEK--SGRVNAGDIIGYVGDDGNARGIPHLHFEVHPGGGSAVNPYPYVAAVC 435
            CPVAGAH+F+DSWG PRS GRRH+GVDMMA  G P  APVSG VEHR N  GG S+HL GD+G+YYYGTHLS YE   +G V AG +IGYVGD GNARGI HLHFE+HPGGG AVNPYP VA  C
Sbjct:  222 CPVAGAHTFVDSWGAPRSGGRRHQGVDMMARPGVPTVAPVSGRVEHRGNSTGGMSWHLYGDNGDYYYGTHLSAYENQGAGHVEAGTVIGYVGDSGNARGISHLHFEIHPGGGGAVNPYPAVAGAC 346          
BLAST of mRNA_M-pyrifera_M_contig82786.19343.1 vs. uniprot
Match: A0A7C1UBI4_9ACTN (Peptidase_M23 domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1UBI4_9ACTN)

HSP 1 Score: 171 bits (433), Expect = 8.350e-49
Identity = 78/124 (62.90%), Postives = 92/124 (74.19%), Query Frame = 1
Query:   67 CPVAGAHSFIDSWGYPRSSGRRHKGVDMMASIGTPIAAPVSGTVEHRSNRVGGRSFHLNGDDGNYYYGTHLSGYEKSGRVNAGDIIGYVGDDGNAR-GIPHLHFEVHPGGGSAVNPYPYVAAVC 435
            CP+ G  SF D+WG PRS GRRHKGVDM A+ GTP+ APVSG V HR NR+GG +F+L+GDDGN YYG H+  Y  SGRV AG ++G VG+ GNAR   PHLHFE+ PGGG +VNP P V A C
Sbjct:  311 CPIGGPTSFADTWGAPRSGGRRHKGVDMFAARGTPVVAPVSGVVRHRDNRLGGHTFYLDGDDGNVYYGAHMDSYGASGRVEAGTVVGTVGNSGNARYSSPHLHFEIKPGGGPSVNPTPQVRAAC 434          
BLAST of mRNA_M-pyrifera_M_contig82786.19343.1 vs. uniprot
Match: A0A6N2DPW9_9ACTN (Peptidase_M23 domain-containing protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DPW9_9ACTN)

HSP 1 Score: 163 bits (412), Expect = 1.390e-45
Identity = 78/125 (62.40%), Postives = 94/125 (75.20%), Query Frame = 1
Query:   67 CPVAGAHSFIDSWGYPRSSGRRHKGVDMMASIGTPIAAPVSGTVEHRSNRVGGRSFHLNGDDGNYYYGTHLSGYEKSG--RVNAGDIIGYVGDDGNARGIPHLHFEVHPGGGSAVNPYPYVAAVC 435
            CPVAG+HSF D+WG PRS GRRH+GVDMMA+ G P+ A VSGTV  R+NR+GG +  L GD+G+ YY  HLS +E S   RV  G++IGY G  GNA G+PHLHFE+HPGGG AVNPYP V + C
Sbjct:  326 CPVAGSHSFADTWGAPRSGGRRHQGVDMMAATGVPLVAVVSGTVTFRTNRLGGNAVWLTGDNGSKYYYAHLSAWEGSSGRRVGQGEVIGYNGSTGNA-GVPHLHFEIHPGGGPAVNPYPAVRSAC 449          
BLAST of mRNA_M-pyrifera_M_contig82786.19343.1 vs. uniprot
Match: A0A349BAH5_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349BAH5_9ACTN)

HSP 1 Score: 158 bits (400), Expect = 1.190e-44
Identity = 84/141 (59.57%), Postives = 95/141 (67.38%), Query Frame = 1
Query:   34 VPANGTGTLKTCPVAGAHSFIDSWGYPRSSGRRHKGVDMMASIGTPIAAPVSGTVEHRSNRVGGRSFHLNGDDGNYYYGTHLSGYEKS-GRVNAGDIIGYVGDDGNARGI-PHLHFEVHPGG-----GSAVNPYPYVAAVC 435
            VP NG      CPVAG  SFID+WG PRS GR+HKGVDM A+ GTP+ APV+G  E   N +GG SF L GDDGN+YYG HLS Y  + G V AG I+GYVG  GNA+G  PHLHFE+HPG       S VNP P VAA C
Sbjct:  207 VPVNGV----VCPVAGPVSFIDTWGAPRSGGRQHKGVDMFAAYGTPVVAPVAGRAEQSKNSLGGLSFRLWGDDGNFYYGAHLSAYSTAFGEVKAGTILGYVGTSGNAQGTSPHLHFEIHPGRRSGDPSSPVNPTPTVAASC 343          
BLAST of mRNA_M-pyrifera_M_contig82786.19343.1 vs. uniprot
Match: A0A848UA09_9ACTN (Peptidoglycan DD-metalloendopeptidase family protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A848UA09_9ACTN)

HSP 1 Score: 158 bits (399), Expect = 4.670e-44
Identity = 76/122 (62.30%), Postives = 90/122 (73.77%), Query Frame = 1
Query:   67 CPVAGAHSFIDSWGYPRSSGRRHKGVDMMASIGTPIAAPVSGTVEHRSNRVGGRSFHLNGDDGNYYYGTHLSGYEK-SGRVNAGDIIGYVGDDGNARGIPHLHFEVHPGGGSAVNPYPYVAA 429
            CPV G  ++ D+WG PRS GRRH+GVDM+A  GTP+ A VSG VEHRSNR+GG +  L GD+GN YY  HL+GYE   GRV    +IGY+GD GNA G+PHLHFE+ PGGG  VNPYP V A
Sbjct:  279 CPVQGFSAYGDTWGAPRSGGRRHQGVDMLAPTGTPLQAVVSGLVEHRSNRLGGITLVLFGDNGNRYYYAHLAGYEGLPGRVEQAQVIGYIGDTGNATGVPHLHFELRPGGGVPVNPYPSVRA 400          
BLAST of mRNA_M-pyrifera_M_contig82786.19343.1 vs. uniprot
Match: A0A539E9A4_9ACTN (Putative metalloendopeptidase (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539E9A4_9ACTN)

HSP 1 Score: 148 bits (374), Expect = 1.640e-43
Identity = 73/124 (58.87%), Postives = 90/124 (72.58%), Query Frame = 1
Query:   67 CPVAGAHSFIDSWGYPRSSGRRHKGVDMMASIGTPIAAPVSGTVEHRSNRVGGRSFHLNGDDGNYYYGTHLSGYEKSGR-VNAGDIIGYVGDDGNARGIPHLHFEVHPGGGSAVNPYPYVAAVC 435
            CPVAG+ +F+D+WG PRS GR H+GVDMM++ GTP+ A VSGTV  ++N++GG    L G DG  YY  HLS +E S R V AG++IGYVG  GN     HLHFE+HPGGG+AVNPYP V A C
Sbjct:    2 CPVAGSTAFVDTWGAPRSGGRTHQGVDMMSANGTPLVAVVSGTVTMKTNKLGGNVVWLTGVDGAKYYYAHLSAWEGSSRSVGAGEVIGYVGSTGNTS-ANHLHFEIHPGGGAAVNPYPTVRAYC 124          
BLAST of mRNA_M-pyrifera_M_contig82786.19343.1 vs. uniprot
Match: A0A381R1H5_9ZZZZ (Peptidase_M23 domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381R1H5_9ZZZZ)

HSP 1 Score: 152 bits (385), Expect = 4.130e-43
Identity = 73/124 (58.87%), Postives = 87/124 (70.16%), Query Frame = 1
Query:   67 CPVAGAHSFIDSWGYPRSSGRRHKGVDMMASIGTPIAAPVSGTVEHRSNRVGGRSFHLNGDDGNYYYGTHLSGYEKSGRVNAGDIIGYVGDDGNARGIPHLHFEVHPGGG-SAVNPYPYVAAVC 435
            CP+     F D+WGYPRS GR H+GVD++     PI APV G V +R + VGGRSF L   DG+YYYG HLS Y + G V AGD+IGY+GD GNA+G+ HLHFE HPGGG +AVNPYP   A C
Sbjct:  155 CPIGARTKFRDTWGYPRSGGRSHEGVDLVGIRHDPIVAPVDGVVSYRWDSVGGRSFDLVATDGDYYYGAHLSAYGREGAVRAGDVIGYMGDSGNAQGV-HLHFEYHPGGGQNAVNPYPLADAHC 277          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82786.19343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2DPE1_9ACTN5.820e-6575.40Peptidoglycan DD-metalloendopeptidase family prote... [more]
A0A7Y2II79_9ACTN1.200e-6475.40Peptidoglycan DD-metalloendopeptidase family prote... [more]
A0A5Q2RE01_9ACTN1.480e-6277.24Peptidoglycan DD-metalloendopeptidase family prote... [more]
A0A7V9GIS7_9ACTN1.080e-5872.00Peptidoglycan DD-metalloendopeptidase family prote... [more]
A0A7C1UBI4_9ACTN8.350e-4962.90Peptidase_M23 domain-containing protein n=1 Tax=Ac... [more]
A0A6N2DPW9_9ACTN1.390e-4562.40Peptidase_M23 domain-containing protein n=1 Tax=Il... [more]
A0A349BAH5_9ACTN1.190e-4459.57Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A848UA09_9ACTN4.670e-4462.30Peptidoglycan DD-metalloendopeptidase family prote... [more]
A0A539E9A4_9ACTN1.640e-4358.87Putative metalloendopeptidase (Fragment) n=1 Tax=A... [more]
A0A381R1H5_9ZZZZ4.130e-4358.87Peptidase_M23 domain-containing protein (Fragment)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82786contigM-pyrifera_M_contig82786:123..560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score149.4
Seed ortholog evalue1.3e-33
Seed eggNOG ortholog1313172.YM304_31100
KEGG koko:K21471,ko:K21472
Hectar predicted targeting categoryother localisation
EggNOG free text desc.heme binding
EggNOG OGsCOG0739@1,COG0739@2
COG Functional cat.M
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko01011
Exons1
Model size438
Cds size438
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816734.5205724-CDS-M-pyrifera_M_contig82786:122..5601622816734.5205724-CDS-M-pyrifera_M_contig82786:122..560Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82786 123..560 +
1692278147.1096356-CDS-M-pyrifera_M_contig82786:122..5601692278147.1096356-CDS-M-pyrifera_M_contig82786:122..560Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82786 123..560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82786.19343.1prot_M-pyrifera_M_contig82786.19343.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82786 123..560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82786.19343.1

>prot_M-pyrifera_M_contig82786.19343.1 ID=prot_M-pyrifera_M_contig82786.19343.1|Name=mRNA_M-pyrifera_M_contig82786.19343.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
AAPTSNGSTASVPANGTGTLKTCPVAGAHSFIDSWGYPRSSGRRHKGVDM
MASIGTPIAAPVSGTVEHRSNRVGGRSFHLNGDDGNYYYGTHLSGYEKSG
RVNAGDIIGYVGDDGNARGIPHLHFEVHPGGGSAVNPYPYVAAVC*
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mRNA from alignment at M-pyrifera_M_contig82786:123..560+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82786.19343.1 ID=mRNA_M-pyrifera_M_contig82786.19343.1|Name=mRNA_M-pyrifera_M_contig82786.19343.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig82786:123..560+ (Macrocystis pyrifera P11B4 male)
GCTGCTCCCACCTCGAACGGATCCACGGCGAGCGTTCCGGCCAACGGAAC CGGGACACTCAAGACCTGCCCGGTCGCCGGCGCCCACTCGTTCATCGACT CGTGGGGCTATCCCCGCTCGAGCGGCCGCCGCCACAAGGGCGTCGACATG ATGGCCTCGATCGGCACACCCATCGCCGCACCGGTGAGCGGCACGGTCGA ACATCGGTCAAATCGTGTCGGTGGTCGGTCGTTCCATCTCAACGGTGACG ACGGCAACTACTACTACGGCACCCACCTGTCGGGCTACGAGAAGTCCGGG CGAGTGAACGCCGGCGACATCATCGGCTACGTCGGCGACGACGGCAACGC CCGCGGGATTCCCCATCTGCACTTCGAAGTGCACCCGGGTGGTGGCAGCG CCGTCAACCCGTACCCCTACGTGGCGGCGGTCTGTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82786:123..560+

>mRNA_M-pyrifera_M_contig82786.19343.1 ID=mRNA_M-pyrifera_M_contig82786.19343.1|Name=mRNA_M-pyrifera_M_contig82786.19343.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig82786:123..560+ (Macrocystis pyrifera P11B4 male)
GCTGCTCCCACCTCGAACGGATCCACGGCGAGCGTTCCGGCCAACGGAAC
CGGGACACTCAAGACCTGCCCGGTCGCCGGCGCCCACTCGTTCATCGACT
CGTGGGGCTATCCCCGCTCGAGCGGCCGCCGCCACAAGGGCGTCGACATG
ATGGCCTCGATCGGCACACCCATCGCCGCACCGGTGAGCGGCACGGTCGA
ACATCGGTCAAATCGTGTCGGTGGTCGGTCGTTCCATCTCAACGGTGACG
ACGGCAACTACTACTACGGCACCCACCTGTCGGGCTACGAGAAGTCCGGG
CGAGTGAACGCCGGCGACATCATCGGCTACGTCGGCGACGACGGCAACGC
CCGCGGGATTCCCCATCTGCACTTCGAAGTGCACCCGGGTGGTGGCAGCG
CCGTCAACCCGTACCCCTACGTGGCGGCGGTCTGTTGAGCTGCTCCCACC
TCGAACGGATCCACGGCGAGCGTTCCGGCCAACGGAACCGGGACACTCAA
GACCTGCCCGGTCGCCGGCGCCCACTCGTTCATCGACTCGTGGGGCTATC
CCCGCTCGAGCGGCCGCCGCCACAAGGGCGTCGACATGATGGCCTCGATC
GGCACACCCATCGCCGCACCGGTGAGCGGCACGGTCGAACATCGGTCAAA
TCGTGTCGGTGGTCGGTCGTTCCATCTCAACGGTGACGACGGCAACTACT
ACTACGGCACCCACCTGTCGGGCTACGAGAAGTCCGGGCGAGTGAACGCC
GGCGACATCATCGGCTACGTCGGCGACGACGGCAACGCCCGCGGGATTCC
CCATCTGCACTTCGAAGTGCACCCGGGTGGTGGCAGCGCCGTCAACCCGT
ACCCCTACGTGGCGGCGGTCTGTTGA
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