mRNA_M-pyrifera_M_contig109263.1934.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109263.1934.1
Unique NamemRNA_M-pyrifera_M_contig109263.1934.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109263.1934.1 vs. uniprot
Match: M2XIW7_GALSU (Calcineurin subunit B n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XIW7_GALSU)

HSP 1 Score: 72.0 bits (175), Expect = 1.570e-13
Identity = 39/97 (40.21%), Postives = 57/97 (58.76%), Query Frame = 1
Query:    1 IPEFAMNPLARRMTALIDREGSMGSINFRSFLQFLSVFGRHKRFSDERYVFLFRLYDVDQDGTISLQDLTHVLKLLVGGWCSQEQTQKIAERTMQAA 291
            IPE AMNPL  R+ ++ D       +NFR F+  LS+F        E+  F FR+YDV+ DG IS+ DL  +L+++VG    Q   ++IA  T+QA+
Sbjct:   53 IPELAMNPLVPRIVSMFD------GVNFRQFVSLLSIFSATSP-KQEKIDFAFRIYDVENDGIISVNDLVELLQMMVGNNLDQSTLEEIARATIQAS 142          
BLAST of mRNA_M-pyrifera_M_contig109263.1934.1 vs. uniprot
Match: D5AE28_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=D5AE28_PICSI)

HSP 1 Score: 71.6 bits (174), Expect = 2.350e-13
Identity = 35/98 (35.71%), Postives = 62/98 (63.27%), Query Frame = 1
Query:    1 IPEFAMNPLARRMTALIDREGSMGSINFRSFLQFLSVFGRHKRFSDERYVFLFRLYDVDQDGTISLQDLTHVLKLLVGGWCSQEQTQKIAERTMQAAG 294
            +PEFA+NPL++R+  ++D       +NF+ FL FLS F        ++  F+F++YD D +G ++L+D+  VL+ L G + S+EQ Q++  + ++ AG
Sbjct:   55 VPEFAVNPLSQRLLRMLD------GLNFKEFLAFLSAFSSRASIR-QKIEFIFKVYDSDGNGKVTLEDILEVLRDLTGSFISEEQRQQVVGQVLEEAG 145          
BLAST of mRNA_M-pyrifera_M_contig109263.1934.1 vs. uniprot
Match: A0A0D6R858_ARACU (Uncharacterized protein n=2 Tax=Araucaria cunninghamii TaxID=56994 RepID=A0A0D6R858_ARACU)

HSP 1 Score: 71.6 bits (174), Expect = 2.350e-13
Identity = 34/98 (34.69%), Postives = 62/98 (63.27%), Query Frame = 1
Query:    1 IPEFAMNPLARRMTALIDREGSMGSINFRSFLQFLSVFGRHKRFSDERYVFLFRLYDVDQDGTISLQDLTHVLKLLVGGWCSQEQTQKIAERTMQAAG 294
            +PEFA+NPL++R+  ++D       +NF+ F+ FLS F        ++  F+F++YD D +G ++L+D+  VL+ L G + S+EQ Q++  + ++ AG
Sbjct:   55 VPEFAVNPLSKRLLTMLD------GLNFKDFVSFLSAFSSRANLQ-QKIEFIFKVYDSDGNGKVTLRDILEVLQDLTGSFISEEQRQQVVGQVLEEAG 145          
BLAST of mRNA_M-pyrifera_M_contig109263.1934.1 vs. uniprot
Match: A0A0L0HJ12_SPIPD (Calcineurin subunit B n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HJ12_SPIPD)

HSP 1 Score: 71.2 bits (173), Expect = 3.310e-13
Identity = 42/106 (39.62%), Postives = 66/106 (62.26%), Query Frame = 1
Query:    1 IPEFAMNPLARRMTALIDREGSMGSINFRSFLQFLSVFGRHKRFSDERYVFLFRLYDVDQDGTISLQDLTHVLKLLVGGWCSQEQTQKIAERTMQAAGCTDSPGKV 318
            +P+ A NPLA+R+ A+ D +GS G ++F+ F+  LS F   K   +E+  F F++YD+D+DG IS  +L  VLK++VG      Q Q+I ++T+  A   D  GK+
Sbjct:   48 LPQVANNPLAQRLLAVFDNDGS-GDVDFKEFISGLSAFST-KGNREEKLKFAFKVYDMDRDGFISNGELFLVLKMMVGNNLRDSQLQQIVDKTIMEADL-DLDGKI 150          
BLAST of mRNA_M-pyrifera_M_contig109263.1934.1 vs. uniprot
Match: F4NVU5_BATDJ (Calcineurin subunit B n=3 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4NVU5_BATDJ)

HSP 1 Score: 70.9 bits (172), Expect = 4.660e-13
Identity = 44/106 (41.51%), Postives = 64/106 (60.38%), Query Frame = 1
Query:    1 IPEFAMNPLARRMTALIDREGSMGSINFRSFLQFLSVFGRHKRFSDERYVFLFRLYDVDQDGTISLQDLTHVLKLLVGGWCSQEQTQKIAERTMQAAGCTDSPGKV 318
            IP  A NPLA+R+ A+ D  GS G ++F+ FL  LS F    +  D+ + F F++YD+D+DG IS  +L  VLK++VG      Q Q+I ++T+  A   D  GKV
Sbjct:   48 IPAIASNPLAQRLLAVFDTNGS-GDVDFKEFLTGLSAFSAKGKKEDKLH-FAFKVYDMDRDGFISNGELFLVLKMMVGNNLKDAQLQQIVDKTIMEADI-DMDGKV 150          
BLAST of mRNA_M-pyrifera_M_contig109263.1934.1 vs. uniprot
Match: A0A8H3TX36_9TREE (Calcineurin subunit B n=1 Tax=Naganishia liquefaciens TaxID=104408 RepID=A0A8H3TX36_9TREE)

HSP 1 Score: 70.5 bits (171), Expect = 6.550e-13
Identity = 44/106 (41.51%), Postives = 65/106 (61.32%), Query Frame = 1
Query:    1 IPEFAMNPLARRMTALIDREGSMGSINFRSFLQFLSVFGRHKRFSDERYVFLFRLYDVDQDGTISLQDLTHVLKLLVGGWCSQEQTQKIAERTMQAAGCTDSPGKV 318
            IP+ A NPLA RM A+ D +GS G ++F+ F+  LS F   K   +E+  F F++YD+D+DG IS  +L  VLK +VG     +Q Q+I ++T+  A   D  GK+
Sbjct:   49 IPQIANNPLAHRMIAIFDTDGS-GHVDFQDFVGGLSAFSS-KGGREEKLRFAFKVYDMDRDGYISNGELYLVLKQMVGNNLKDQQLQQIVDKTIMEAD-KDGDGKL 151          
BLAST of mRNA_M-pyrifera_M_contig109263.1934.1 vs. uniprot
Match: A0A1E3PFF8_9ASCO (Calcineurin subunit B n=1 Tax=Nadsonia fulvescens var. elongata DSM 6958 TaxID=857566 RepID=A0A1E3PFF8_9ASCO)

HSP 1 Score: 69.7 bits (169), Expect = 1.270e-12
Identity = 39/94 (41.49%), Postives = 60/94 (63.83%), Query Frame = 1
Query:    1 IPEFAMNPLARRMTALIDREGSMGSINFRSFLQFLSVFGRHKRFSDERYVFLFRLYDVDQDGTISLQDLTHVLKLLVGGWCSQEQTQKIAERTM 282
            +P  A NPLA R+ A+ D +GS G I+F+ F+  LS F   K  ++E+  F F++YD+D+DG IS  +L  VLK++VG    + Q Q I ++T+
Sbjct:   49 LPGIANNPLASRLIAVFDEDGS-GDIDFQEFITGLSAFSS-KGNNEEKLKFTFKIYDIDRDGYISNGELFLVLKMMVGNNLKENQLQHIVDKTI 140          
BLAST of mRNA_M-pyrifera_M_contig109263.1934.1 vs. uniprot
Match: A0A0G4IJZ1_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IJZ1_PLABS)

HSP 1 Score: 69.7 bits (169), Expect = 1.450e-12
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = 1
Query:    1 IPEFAMNPLARRMTALIDREGSMGSINFRSFLQFLSVFGRHKRFSDERYVFLFRLYDVDQDGTISLQDLTHVLKLLVGGWCSQEQTQKIAERTMQAAGCTDSPGKV 318
            +P    NPL +R+  + D + + G ++F+ F+  LS+F         R  F+FR+YDV+ DG IS  DL  VLK++VG   ++ Q Q++ +RT+ A G TD  GK+
Sbjct:   56 VPYLMHNPLVKRVMEIFDADKN-GQVDFKEFIDALSIFTSSGDQDASRLAFVFRIYDVNNDGYISNGDLFAVLKIMVGDNLTEVQLQQLVDRTI-ATGDTDCDGKL 159          
BLAST of mRNA_M-pyrifera_M_contig109263.1934.1 vs. uniprot
Match: A0A481SVZ1_9INSE (Calcineurin b subunit n=2 Tax=Zygentoma TaxID=30264 RepID=A0A481SVZ1_9INSE)

HSP 1 Score: 69.7 bits (169), Expect = 1.680e-12
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 1
Query:    1 IPEFAMNPLARRMTALIDREGSMGSINFRSFLQFLSVFGRHKR-------FSDERYVFLFRLYDVDQDGTISLQDLTHVLKLLVGGWCSQEQTQKIAERTMQAA 291
            IPE A+NPL  R+     ++ S   +NFR F++ L+ F   K+         DE+  F F++YD+D DG IS  +L  +L ++VG   S+EQ   IAERT+  A
Sbjct:   54 IPELAINPLGDRIVHAFFQDSSDDRVNFRQFMRVLAHFRPIKKNRENTLNSRDEKLKFAFKMYDLDDDGRISRDELLAILHMMVGANISEEQLTSIAERTIMEA 157          
BLAST of mRNA_M-pyrifera_M_contig109263.1934.1 vs. uniprot
Match: UPI001E1DF377 (calcineurin subunit B-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DF377)

HSP 1 Score: 68.9 bits (167), Expect = 2.420e-12
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = 1
Query:    1 IPEFAMNPLARRMTALIDREGSMGSINFRSFLQFLSVFGRHKRFSDERYVFLFRLYDVDQDGTISLQDLTHVLKLLVGGWCSQEQTQKIAERTMQAAGCTDSPGKV 318
            IPE AMNPL  R+ ++ D      S+NFR F+Q LS+FG +      +  F FR+YDVDQDG +S  DL+ VL+++VG     +   ++ ++  + A   D+ G++
Sbjct:   53 IPELAMNPLVPRIVSVFD------SVNFREFVQNLSLFGPNGT-PQAKIDFAFRVYDVDQDGFVSEDDLSTVLRMMVGDNIDDDSLHRVVQKVFKDAD-KDNDGRI 150          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109263.1934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
M2XIW7_GALSU1.570e-1340.21Calcineurin subunit B n=1 Tax=Galdieria sulphurari... [more]
D5AE28_PICSI2.350e-1335.71Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]
A0A0D6R858_ARACU2.350e-1334.69Uncharacterized protein n=2 Tax=Araucaria cunningh... [more]
A0A0L0HJ12_SPIPD3.310e-1339.62Calcineurin subunit B n=2 Tax=Spizellomyces TaxID=... [more]
F4NVU5_BATDJ4.660e-1341.51Calcineurin subunit B n=3 Tax=Batrachochytrium den... [more]
A0A8H3TX36_9TREE6.550e-1341.51Calcineurin subunit B n=1 Tax=Naganishia liquefaci... [more]
A0A1E3PFF8_9ASCO1.270e-1241.49Calcineurin subunit B n=1 Tax=Nadsonia fulvescens ... [more]
A0A0G4IJZ1_PLABS1.450e-1237.74Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A481SVZ1_9INSE1.680e-1238.46Calcineurin b subunit n=2 Tax=Zygentoma TaxID=3026... [more]
UPI001E1DF3772.420e-1237.74calcineurin subunit B-like n=1 Tax=Mercenaria merc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109263contigM-pyrifera_M_contig109263:289..606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score76.3
Seed ortholog evalue9.4e-12
Seed eggNOG ortholog109760.SPPG_00562T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Calcineurin subunit B
EggNOG OGs38D4P@33154,3P06Y@4751,COG5126@1,KOG0034@2759
COG Functional cat.T
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Exons1
Model size318
Cds size303
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815602.488123-CDS-M-pyrifera_M_contig109263:288..5911622815602.488123-CDS-M-pyrifera_M_contig109263:288..591Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109263 289..591 -
1692277482.7800279-CDS-M-pyrifera_M_contig109263:288..5911692277482.7800279-CDS-M-pyrifera_M_contig109263:288..591Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109263 289..591 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815602.50371-UTR-M-pyrifera_M_contig109263:591..6061622815602.50371-UTR-M-pyrifera_M_contig109263:591..606Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109263 592..606 -
1692277482.7943196-UTR-M-pyrifera_M_contig109263:591..6061692277482.7943196-UTR-M-pyrifera_M_contig109263:591..606Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109263 592..606 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109263.1934.1prot_M-pyrifera_M_contig109263.1934.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109263 289..591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109263.1934.1

>prot_M-pyrifera_M_contig109263.1934.1 ID=prot_M-pyrifera_M_contig109263.1934.1|Name=mRNA_M-pyrifera_M_contig109263.1934.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
MNPLARRMTALIDREGSMGSINFRSFLQFLSVFGRHKRFSDERYVFLFRL
YDVDQDGTISLQDLTHVLKLLVGGWCSQEQTQKIAERTMQAAGCTDSPGK
V
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mRNA from alignment at M-pyrifera_M_contig109263:289..606-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109263.1934.1 ID=mRNA_M-pyrifera_M_contig109263.1934.1|Name=mRNA_M-pyrifera_M_contig109263.1934.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig109263:289..606- (Macrocystis pyrifera P11B4 male)
ATTCCCGAATTCGCCATGAACCCGCTCGCGAGGCGCATGACGGCGCTGAT TGACCGCGAGGGCAGCATGGGCAGCATCAACTTCCGCTCCTTCCTCCAGT TCCTCTCCGTGTTCGGCAGGCACAAGCGATTTTCAGACGAGAGGTACGTC TTCCTCTTTCGCCTCTACGACGTCGACCAGGATGGCACCATCTCCCTCCA AGACCTCACGCACGTCCTAAAACTCCTCGTGGGAGGCTGGTGCTCCCAGG AACAAACCCAGAAAATCGCAGAAAGAACCATGCAAGCTGCTGGATGCACC GATTCCCCAGGTAAAGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109263:289..606-

>mRNA_M-pyrifera_M_contig109263.1934.1 ID=mRNA_M-pyrifera_M_contig109263.1934.1|Name=mRNA_M-pyrifera_M_contig109263.1934.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig109263:289..606- (Macrocystis pyrifera P11B4 male)
ATGAACCCGCTCGCGAGGCGCATGACGGCGCTGATTGACCGCGAGGGCAG
CATGGGCAGCATCAACTTCCGCTCCTTCCTCCAGTTCCTCTCCGTGTTCG
GCAGGCACAAGCGATTTTCAGACGAGAGGTACGTCTTCCTCTTTCGCCTC
TACGACGTCGACCAGGATGGCACCATCTCCCTCCAAGACCTCACGCACGT
CCTAAAACTCCTCGTGGGAGGCTGGTGCTCCCAGGAACAAACCCAGAAAA
TCGCAGAAAGAACCATGCAAGCTGCTGGATGCACCGATTCCCCAGGTAAA
GTGATGAACCCGCTCGCGAGGCGCATGACGGCGCTGATTGACCGCGAGGG
CAGCATGGGCAGCATCAACTTCCGCTCCTTCCTCCAGTTCCTCTCCGTGT
TCGGCAGGCACAAGCGATTTTCAGACGAGAGGTACGTCTTCCTCTTTCGC
CTCTACGACGTCGACCAGGATGGCACCATCTCCCTCCAAGACCTCACGCA
CGTCCTAAAACTCCTCGTGGGAGGCTGGTGCTCCCAGGAACAAACCCAGA
AAATCGCAGAAAGAACCATGCAAGCTGCTGGATGCACCGATTCCCCAGGT
AAAGTG
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