mRNA_M-pyrifera_M_contig82758.19339.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82758.19339.1
Unique NamemRNA_M-pyrifera_M_contig82758.19339.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig82758.19339.1 vs. uniprot
Match: H1YFE7_9SPHI (ATP-binding region ATPase domain protein n=1 Tax=Mucilaginibacter paludis DSM 18603 TaxID=714943 RepID=H1YFE7_9SPHI)

HSP 1 Score: 57.0 bits (136), Expect = 4.510e-6
Identity = 39/156 (25.00%), Postives = 75/156 (48.08%), Query Frame = 1 
Query:  130 KALELSKKIDNEELLSMSLSNLAISSRKMGMEVEAIHYANQAIGLVNDLESSEMLVSLHLEKGMCFYQTENWNRARDHFFESLTKEINVDDSRHLARVYVNLGHYYNLKREYDNAVNXYDMAMEQGANLVGVDEANYAYDSLTTYFIRTEDFKSAL 597
            KAL LS K+ N+EL+   L+ LA+     G   +++  + +AI    DL+  + +          FY+T+N++    +  + L      +D  + ARV  +LG  Y    +  NA+  Y+ A++        +  + AY+ L+  +++ ++ K AL
Sbjct:   35 KALLLSHKLQNKELIGRCLNRLALFKMIQGEYDKSLSMSEEAIKYFEDLKDDKGIADAKYNIAGIFYKTDNFHLGLIYLIDCLATYRKYNDYHNQARVEKSLGTIYEYFGDEKNAIKSYESAVQTARIAEDSNLESNAYNPLSGVYLKQKNAKKAL 190
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BLAST of mRNA_M-pyrifera_M_contig82758.19339.1 vs. uniprot
Match: A0A0J0YLC2_9FLAO (Histidine kinase n=3 Tax=unclassified Flavobacterium TaxID=196869 RepID=A0A0J0YLC2_9FLAO)

HSP 1 Score: 55.1 bits (131), Expect = 2.030e-5
Identity = 42/184 (22.83%), Postives = 87/184 (47.28%), Query Frame = 1 
Query:   52 IAHLTLDIGRLFYENRAFDKALKYYKKALELSKKIDNEELLSMSLSNLAISSRKMGMEVEAIHYANQAIGLVNDLESSEMLVSLHLEKGMCFYQTENWNRARDHFFESLTKEINVDDSRHLARVYVNLGHYYNLKREYDNAVNXYDMAMEQGANLVGVDEANYAYDSLTTYFIRTEDFKSALTY 603
            +A+ T  +G+++Y  R +++ALK + K++ L  K       +++L  + I++   G    A  Y  +A  L+  L   +    LH EK + F  + N+  A + F + + K  N  + +     Y  LG      ++ D+A+  +D A+E  A    + + +    +++ Y+ + + F  A +Y
Sbjct:   66 LANQTFKLGKIYYNQRNYNEALKNFYKSVALFDKAKPTCTKALALHYIGITNVAKGNYQLAEIYYKKADSLLKKLNIVDKAEILHYEKAIAFKASNNFPLAIETFQKIVKKPDNKPNLKTKTDAYYQLGLIETQLKQNDSAIIHFDKALEINAKTNDLVQKSRIILAISQYYKKNKHFDLAYSY 249
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BLAST of mRNA_M-pyrifera_M_contig82758.19339.1 vs. uniprot
Match: A0A1F3IMT2_9BACT (CHAT domain-containing protein n=1 Tax=Bacteroidetes bacterium GWF2_33_16 TaxID=1797341 RepID=A0A1F3IMT2_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 9.510e-5
Identity = 47/181 (25.97%), Postives = 82/181 (45.30%), Query Frame = 1 
Query:    4 FYRAIEVNKQMKNDVQIAHLTLDIGRLFYENRAFDKALKYYKKALELSKKIDNEELLSMSLSNLA-ISSRKMGMEVEAIHYANQAIGLVNDLESSEMLVSLHLEKGMCFYQTENWNRARDHFFESLTKEINVDDSRHLARVYVNLGHYYNLKREYDNAVNXYDMAMEQGANLVGVDEANYA 543
            F ++ +  + + + + +A L +++G + Y    ++KA+KYY KA EL K +D++  L+    N A I   +   +     Y N  I L  +  S   + S++   G+ +  T N  +A ++F ESL  +   D    L   + N+   Y+     D A   Y  A+E     VG     YA
Sbjct:   60 FLKSFQYYQSINSSIHLAPLNVNLGIIQYHYGNYEKAMKYYNKAEELYKNLDDKNQLTYVYINKANIFEIQKDYKKAEQFYLNALIILNQNKGSKLTIASVYNNLGIVYRNTGNNEKAIEYFLESLKLK---DVHERLFTPFGNIALSYDQLNRIDEAEIYYLKALENIEQTVGNKNRWYA 237
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82758.19339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
H1YFE7_9SPHI4.510e-625.00ATP-binding region ATPase domain protein n=1 Tax=M... [more]
A0A0J0YLC2_9FLAO2.030e-522.83Histidine kinase n=3 Tax=unclassified Flavobacteri... [more]
A0A1F3IMT2_9BACT9.510e-525.97CHAT domain-containing protein n=1 Tax=Bacteroidet... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82758contigM-pyrifera_M_contig82758:186..902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size603
Cds size603
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816734.368433-CDS-M-pyrifera_M_contig82758:185..4091622816734.368433-CDS-M-pyrifera_M_contig82758:185..409Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82758 186..409 -
1692278147.0459416-CDS-M-pyrifera_M_contig82758:185..4091692278147.0459416-CDS-M-pyrifera_M_contig82758:185..409Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82758 186..409 -
1622816734.381005-CDS-M-pyrifera_M_contig82758:523..9021622816734.381005-CDS-M-pyrifera_M_contig82758:523..902Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82758 524..902 -
1692278147.059437-CDS-M-pyrifera_M_contig82758:523..9021692278147.059437-CDS-M-pyrifera_M_contig82758:523..902Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82758 524..902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82758.19339.1prot_M-pyrifera_M_contig82758.19339.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82758 186..902 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82758.19339.1

>prot_M-pyrifera_M_contig82758.19339.1 ID=prot_M-pyrifera_M_contig82758.19339.1|Name=mRNA_M-pyrifera_M_contig82758.19339.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=201bp
SFYRAIEVNKQMKNDVQIAHLTLDIGRLFYENRAFDKALKYYKKALELSK
KIDNEELLSMSLSNLAISSRKMGMEVEAIHYANQAIGLVNDLESSEMLVS
LHLEKGMCFYQTENWNRARDHFFESLTKEINVDDSRHLARVYVNLGHYYN
LKREYDNAVNYYDMAMEQGANLVGVDEANYAYDSLTTYFIRTEDFKSALT
Y
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mRNA from alignment at M-pyrifera_M_contig82758:186..902-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82758.19339.1 ID=mRNA_M-pyrifera_M_contig82758.19339.1|Name=mRNA_M-pyrifera_M_contig82758.19339.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=717bp|location=Sequence derived from alignment at M-pyrifera_M_contig82758:186..902- (Macrocystis pyrifera P11B4 male)
TCTTTTTACAGGGCAATCGAGGTCAACAAGCAAATGAAAAATGACGTGCA
AATAGCTCATTTGACCCTGGACATAGGAAGATTGTTTTATGAAAACAGAG
CCTTTGATAAGGCGCTTAAGTACTATAAAAAAGCACTCGAATTGAGTAAG
AAAATTGACAACGAAGAGTTATTGTCGATGTCTCTATCAAACTTAGCCAT
AAGTTCCAGAAAGATGGGTATGGAAGTAGAAGCTATACATTATGCAAATC
AAGCAATTGGATTGGTCAACGACCTTGAAAGTTCAGAAATGTTGGTGAGT
CTACATTTAGAAAAGGGTATGTGCTTTTATCAAACTGAGAATTGGAATAG
AGCGCGAGATCATTTTTTTGAATCGCTGAGTCTGGCGAATGAAATGGGAA
GATTCGACTTTGTCGGTAGGAATTTGAACAATATTGCTTCAACCTATTTA
AGAGAAGACAACATTGAAAGAGCTGAAAGTTATCTCATTAGAGCTAAAGA
AATTAATGTAGATGACTCTCGCCATTTGGCTAGGGTCTATGTGAACCTTG
GTCATTATTATAATTTGAAGAGGGAATATGATAACGCCGTCAATTACTAT
GACATGGCAATGGAGCAAGGGGCGAACTTGGTAGGGGTAGATGAGGCAAA
TTATGCCTATGATTCACTTACTACCTATTTTATTCGTACCGAGGATTTTA
AGAGTGCTTTGACCTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82758:186..902-

>mRNA_M-pyrifera_M_contig82758.19339.1 ID=mRNA_M-pyrifera_M_contig82758.19339.1|Name=mRNA_M-pyrifera_M_contig82758.19339.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1206bp|location=Sequence derived from alignment at M-pyrifera_M_contig82758:186..902- (Macrocystis pyrifera P11B4 male)
TCTTTTTACAGGGCAATCGAGGTCAACAAGCAAATGAAAAATGACGTGCA
AATAGCTCATTTGACCCTGGACATAGGAAGATTGTTTTATGAAAACAGAG
CCTTTGATAAGGCGCTTAAGTACTATAAAAAAGCACTCGAATTGAGTAAG
AAAATTGACAACGAAGAGTTATTGTCGATGTCTCTATCAAACTTAGCCAT
AAGTTCCAGAAAGATGGGTATGGAAGTAGAAGCTATACATTATGCAAATC
AAGCAATTGGATTGGTCAACGACCTTGAAAGTTCAGAAATGTTGGTGAGT
CTACATTTAGAAAAGGGTATGTGCTTTTATCAAACTGAGAATTGGAATAG
AGCGCGAGATCATTTTTTTGAATCGCTGATCTTTTTACAGGGCAATCGAG
GTCAACAAGCAAATGAAAAATGACGTGCAAATAGCTCATTTGACCCTGGA
CATAGGAAGATTGTTTTATGAAAACAGAGCCTTTGATAAGGCGCTTAAGT
ACTATAAAAAAGCACTCGAATTGAGTAAGAAAATTGACAACGAAGAGTTA
TTGTCGATGTCTCTATCAAACTTAGCCATAAGTTCCAGAAAGATGGGTAT
GGAAGTAGAAGCTATACATTATGCAAATCAAGCAATTGGATTGGTCAACG
ACCTTGAAAGTTCAGAAATGTTGGTGAGTCTACATTTAGAAAAGGGTATG
TGCTTTTATCAAACTGAGAATTGGAATAGAGCGCGAGATCATTTTTTTGA
ATCGCTGACTAAAGAAATTAATGTAGATGACTCTCGCCATTTGGCTAGGG
TCTATGTGAACCTTGGTCATTATTATAATTTGAAGAGGGAATATGATAAC
GCCGTCAATTACTATGACATGGCAATGGAGCAAGGGGCGAACTTGGTAGG
GGTAGATGAGGCAAATTATGCCTATGATTCACTTACTACCTATTTTATTC
GTACCGAGGATTTTAAGAGTGCTTTGACCTACCTAAAGAAATTAATGTAG
ATGACTCTCGCCATTTGGCTAGGGTCTATGTGAACCTTGGTCATTATTAT
AATTTGAAGAGGGAATATGATAACGCCGTCAATTACTATGACATGGCAAT
GGAGCAAGGGGCGAACTTGGTAGGGGTAGATGAGGCAAATTATGCCTATG
ATTCACTTACTACCTATTTTATTCGTACCGAGGATTTTAAGAGTGCTTTG
ACCTAC
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