mRNA_M-pyrifera_M_contig82757.19338.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82757.19338.1
Unique NamemRNA_M-pyrifera_M_contig82757.19338.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig82757.19338.1 vs. uniprot
Match: A0A7G9NZ91_9BACT (Uncharacterized protein n=1 Tax=Planctomycetales bacterium zrk34 TaxID=2723666 RepID=A0A7G9NZ91_9BACT)

HSP 1 Score: 164 bits (414), Expect = 4.770e-43
Identity = 86/156 (55.13%), Postives = 111/156 (71.15%), Query Frame = 1 
Query:   31 KSVLLNSGQFTWQLPLLSISSVGGVGWSFGLNYLADSGVDDVLGLNFSFPQYMRLEEGI-GYVDLALSDYTQERFTETSPNVYEPADDNNTQSTLVRTGSGTSNDEFTLTSAQGVVTKFFGFHVSITTPGRLKSIADRYGSVQAYEWTVTSGVVQL 495
            +SVLL +G+F+++  LLS+ S+GG+ W+F L+YL ++GVD +LG NF++PQ +RLEE + G VDL     T E F +T P+ YEPA DNNTQS L R GSG + DEFTLTSA G V+KFFGF   I TPGR+KSI DRYG+ Q Y W    G  Q+
Sbjct:  132 QSVLLTAGRFSFKQRLLSVDSIGGISWAFNLSYLGNNGVDGLLGKNFNYPQNLRLEEQVSGDVDLLSGKNTSETFNKTGPSTYEPAADNNTQSVLTRAGSGAT-DEFTLTSASGTVSKFFGFDSPIPTPGRVKSITDRYGNQQTYTWVNVGGQDQV 286
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82757.19338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7G9NZ91_9BACT4.770e-4355.13Uncharacterized protein n=1 Tax=Planctomycetales b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82757contigM-pyrifera_M_contig82757:2..616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size615
Cds size615
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816734.333343-CDS-M-pyrifera_M_contig82757:1..6161622816734.333343-CDS-M-pyrifera_M_contig82757:1..616Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82757 2..616 -
1692278147.0360377-CDS-M-pyrifera_M_contig82757:1..6161692278147.0360377-CDS-M-pyrifera_M_contig82757:1..616Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82757 2..616 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82757.19338.1prot_M-pyrifera_M_contig82757.19338.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82757 2..616 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82757.19338.1

>prot_M-pyrifera_M_contig82757.19338.1 ID=prot_M-pyrifera_M_contig82757.19338.1|Name=mRNA_M-pyrifera_M_contig82757.19338.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=205bp
NSCSAAVTGGKSVLLNSGQFTWQLPLLSISSVGGVGWSFGLNYLADSGVD
DVLGLNFSFPQYMRLEEGIGYVDLALSDYTQERFTETSPNVYEPADDNNT
QSTLVRTGSGTSNDEFTLTSAQGVVTKFFGFHVSITTPGRLKSIADRYGS
VQAYEWTVTSGVVQLAKITDSYDRSIEYRYYGSEYGYRLQEIEDFLERKL
NFQYD
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mRNA from alignment at M-pyrifera_M_contig82757:2..616-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82757.19338.1 ID=mRNA_M-pyrifera_M_contig82757.19338.1|Name=mRNA_M-pyrifera_M_contig82757.19338.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=615bp|location=Sequence derived from alignment at M-pyrifera_M_contig82757:2..616- (Macrocystis pyrifera P11B4 male)
AACTCCTGCTCCGCTGCCGTGACAGGGGGCAAGTCGGTTCTTCTGAACTC
CGGCCAATTCACTTGGCAGTTGCCGCTGCTGTCGATCAGTTCTGTAGGTG
GCGTTGGCTGGTCTTTTGGACTCAACTATCTCGCGGATAGTGGTGTGGAT
GACGTGCTCGGATTGAACTTCAGTTTCCCCCAATACATGCGGCTGGAAGA
GGGAATTGGCTATGTCGACTTGGCCCTCAGTGACTATACGCAAGAACGAT
TTACCGAGACTTCACCCAACGTTTACGAACCTGCGGATGACAACAACACA
CAGTCCACGCTGGTGCGTACCGGCAGCGGGACTTCGAATGACGAATTCAC
GCTGACTTCCGCACAGGGGGTCGTTACTAAGTTCTTCGGATTCCACGTAT
CGATCACCACGCCCGGCCGTCTCAAAAGCATTGCCGACCGCTATGGGAGC
GTACAGGCCTACGAGTGGACGGTGACCAGTGGCGTGGTGCAACTGGCCAA
GATCACCGACTCTTACGATCGCTCGATCGAGTATCGCTACTACGGCAGCG
AGTACGGCTATCGTCTCCAGGAGATCGAGGACTTCCTGGAACGCAAACTG
AACTTCCAGTACGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82757:2..616-

>mRNA_M-pyrifera_M_contig82757.19338.1 ID=mRNA_M-pyrifera_M_contig82757.19338.1|Name=mRNA_M-pyrifera_M_contig82757.19338.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1230bp|location=Sequence derived from alignment at M-pyrifera_M_contig82757:2..616- (Macrocystis pyrifera P11B4 male)
AACTCCTGCTCCGCTGCCGTGACAGGGGGCAAGTCGGTTCTTCTGAACTC
CGGCCAATTCACTTGGCAGTTGCCGCTGCTGTCGATCAGTTCTGTAGGTG
GCGTTGGCTGGTCTTTTGGACTCAACTATCTCGCGGATAGTGGTGTGGAT
GACGTGCTCGGATTGAACTTCAGTTTCCCCCAATACATGCGGCTGGAAGA
GGGAATTGGCTATGTCGACTTGGCCCTCAGTGACTATACGCAAGAACGAT
TTACCGAGACTTCACCCAACGTTTACGAACCTGCGGATGACAACAACACA
CAGTCCACGCTGGTGCGTACCGGCAGCGGGACTTCGAATGACGAATTCAC
GCTGACTTCCGCACAGGGGGTCGTTACTAAGTTCTTCGGATTCCACGTAT
CGATCACCACGCCCGGCCGTCTCAAAAGCATTGCCGACCGCTATGGGAGC
GTACAGGCCTACGAGTGGACGGTGACCAGTGGCGTGGTGCAACTGGCCAA
GATCACCGACTCTTACGATCGCTCGATCGAGTATCGCTACTACGGCAGCG
AGTACGGCTATCGTCTCCAGGAGATCGAGGACTTCCTGGAACGCAAACTG
AACTTCCAGTACGACAACTCCTGCTCCGCTGCCGTGACAGGGGGCAAGTC
GGTTCTTCTGAACTCCGGCCAATTCACTTGGCAGTTGCCGCTGCTGTCGA
TCAGTTCTGTAGGTGGCGTTGGCTGGTCTTTTGGACTCAACTATCTCGCG
GATAGTGGTGTGGATGACGTGCTCGGATTGAACTTCAGTTTCCCCCAATA
CATGCGGCTGGAAGAGGGAATTGGCTATGTCGACTTGGCCCTCAGTGACT
ATACGCAAGAACGATTTACCGAGACTTCACCCAACGTTTACGAACCTGCG
GATGACAACAACACACAGTCCACGCTGGTGCGTACCGGCAGCGGGACTTC
GAATGACGAATTCACGCTGACTTCCGCACAGGGGGTCGTTACTAAGTTCT
TCGGATTCCACGTATCGATCACCACGCCCGGCCGTCTCAAAAGCATTGCC
GACCGCTATGGGAGCGTACAGGCCTACGAGTGGACGGTGACCAGTGGCGT
GGTGCAACTGGCCAAGATCACCGACTCTTACGATCGCTCGATCGAGTATC
GCTACTACGGCAGCGAGTACGGCTATCGTCTCCAGGAGATCGAGGACTTC
CTGGAACGCAAACTGAACTTCCAGTACGAC
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