mRNA_M-pyrifera_M_contig82740.19336.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82740.19336.1
Unique NamemRNA_M-pyrifera_M_contig82740.19336.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82740.19336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82740contigM-pyrifera_M_contig82740:2..397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score63.5
Seed ortholog evalue8.3e-08
Seed eggNOG ortholog946362.XP_004988754.1
Preferred nameSRV2
KEGG koko:K17261
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000935,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005937,GO:0005938,GO:0006996,GO:0007010,GO:0007015,GO:0007154,GO:0007163,GO:0007165,GO:0007264,GO:0007265,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008179,GO:0009653,GO:0009987,GO:0010638,GO:0015629,GO:0016043,GO:0019899,GO:0022411,GO:0023052,GO:0030029,GO:0030036,GO:0030042,GO:0030427,GO:0030428,GO:0030479,GO:0030832,GO:0030834,GO:0030836,GO:0030863,GO:0030864,GO:0031135,GO:0031137,GO:0031138,GO:0031279,GO:0032153,GO:0032155,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0032984,GO:0032989,GO:0033043,GO:0035556,GO:0035838,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043243,GO:0043244,GO:0043332,GO:0043624,GO:0043900,GO:0043901,GO:0043933,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044463,GO:0044464,GO:0045761,GO:0046999,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051014,GO:0051128,GO:0051130,GO:0051261,GO:0051286,GO:0051339,GO:0051493,GO:0051495,GO:0051716,GO:0061645,GO:0065007,GO:0065008,GO:0065009,GO:0071840,GO:0071944,GO:0090066,GO:0097435,GO:0099568,GO:0110053,GO:0120025,GO:0120038,GO:1901879,GO:1901881,GO:1902903,GO:1902905,GO:2000241,GO:2000242
EggNOG free text desc.Belongs to the CAP family
EggNOG OGs38CGH@33154,KOG2675@1,KOG2675@2759
COG Functional cat.TZ
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Exons1
Model size396
Cds size396
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816734.2658122-CDS-M-pyrifera_M_contig82740:1..3971622816734.2658122-CDS-M-pyrifera_M_contig82740:1..397Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82740 2..397 -
1692278147.0113285-CDS-M-pyrifera_M_contig82740:1..3971692278147.0113285-CDS-M-pyrifera_M_contig82740:1..397Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82740 2..397 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82740.19336.1prot_M-pyrifera_M_contig82740.19336.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82740 2..397 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82740.19336.1

>prot_M-pyrifera_M_contig82740.19336.1 ID=prot_M-pyrifera_M_contig82740.19336.1|Name=mRNA_M-pyrifera_M_contig82740.19336.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
MESAIKTLLDRLETVTARLESVESQLGGAAPAAGGAAPAAGGAGESGAAL
VSDYDNLVSELSGFFTSSRKFANAELSAQIDALEAGIKAQRTFLNVVSQA
KKPSDEVFGKLLADTSAAVAKVIEIRDSNRGN
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mRNA from alignment at M-pyrifera_M_contig82740:2..397-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82740.19336.1 ID=mRNA_M-pyrifera_M_contig82740.19336.1|Name=mRNA_M-pyrifera_M_contig82740.19336.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig82740:2..397- (Macrocystis pyrifera P11B4 male)
ATGGAGTCCGCCATCAAGACCCTTCTCGACCGTCTCGAGACCGTCACCGC
CCGCCTGGAGTCGGTGGAGTCTCAGCTCGGAGGCGCCGCACCTGCCGCTG
GCGGTGCCGCCCCCGCCGCCGGCGGTGCTGGCGAGTCTGGCGCTGCTCTT
GTGTCCGACTACGACAACCTCGTGAGCGAGCTCTCTGGCTTTTTCACTTC
CTCGCGCAAGTTCGCCAACGCCGAGCTCTCTGCGCAGATCGACGCCCTCG
AGGCCGGCATCAAGGCCCAGCGCACCTTCCTCAACGTCGTCTCGCAGGCC
AAGAAGCCCTCTGACGAGGTCTTCGGCAAGCTCCTTGCCGACACCTCTGC
TGCTGTCGCCAAGGTGATTGAGATCCGCGACTCGAACCGCGGCAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82740:2..397-

>mRNA_M-pyrifera_M_contig82740.19336.1 ID=mRNA_M-pyrifera_M_contig82740.19336.1|Name=mRNA_M-pyrifera_M_contig82740.19336.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig82740:2..397- (Macrocystis pyrifera P11B4 male)
ATGGAGTCCGCCATCAAGACCCTTCTCGACCGTCTCGAGACCGTCACCGC
CCGCCTGGAGTCGGTGGAGTCTCAGCTCGGAGGCGCCGCACCTGCCGCTG
GCGGTGCCGCCCCCGCCGCCGGCGGTGCTGGCGAGTCTGGCGCTGCTCTT
GTGTCCGACTACGACAACCTCGTGAGCGAGCTCTCTGGCTTTTTCACTTC
CTCGCGCAAGTTCGCCAACGCCGAGCTCTCTGCGCAGATCGACGCCCTCG
AGGCCGGCATCAAGGCCCAGCGCACCTTCCTCAACGTCGTCTCGCAGGCC
AAGAAGCCCTCTGACGAGGTCTTCGGCAAGCTCCTTGCCGACACCTCTGC
TGCTGTCGCCAAGGTGATTGAGATCCGCGACTCGAACCGCGGCAACATGG
AGTCCGCCATCAAGACCCTTCTCGACCGTCTCGAGACCGTCACCGCCCGC
CTGGAGTCGGTGGAGTCTCAGCTCGGAGGCGCCGCACCTGCCGCTGGCGG
TGCCGCCCCCGCCGCCGGCGGTGCTGGCGAGTCTGGCGCTGCTCTTGTGT
CCGACTACGACAACCTCGTGAGCGAGCTCTCTGGCTTTTTCACTTCCTCG
CGCAAGTTCGCCAACGCCGAGCTCTCTGCGCAGATCGACGCCCTCGAGGC
CGGCATCAAGGCCCAGCGCACCTTCCTCAACGTCGTCTCGCAGGCCAAGA
AGCCCTCTGACGAGGTCTTCGGCAAGCTCCTTGCCGACACCTCTGCTGCT
GTCGCCAAGGTGATTGAGATCCGCGACTCGAACCGCGGCAAC
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