mRNA_M-pyrifera_M_contig82707.19332.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82707.19332.1
Unique NamemRNA_M-pyrifera_M_contig82707.19332.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82707.19332.1 vs. uniprot
Match: A0A068RS72_9FUNG (Lysosomal cystine transporter family n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068RS72_9FUNG)

HSP 1 Score: 142 bits (357), Expect = 3.260e-39
Identity = 66/110 (60.00%), Postives = 88/110 (80.00%), Query Frame = 1
Query:   70 ATWLDFLLFVSYIKLAVSLIKYIPQAYLNFARRTTDGFNIYNVLLDFTGGMLSVAQLLLDSGLSGDWSGISGDPVKFGLGLCSMVFDSVFMVQHYILFPGNNAAYFRARD 399
            A W+D + ++SY+KL +S+IKY+PQA++NF R++T G++I+N+LLDFTGG LSVAQLLLDS LSGDWSG+SGDPVKFGLG  S+ FD +F+ QHYIL+      Y  + D
Sbjct:  153 AMWIDLMYYLSYVKLLISIIKYLPQAWINFRRKSTVGWSIHNILLDFTGGTLSVAQLLLDSYLSGDWSGVSGDPVKFGLGFVSIAFDLLFITQHYILYRDRTDYYLSSVD 262          
BLAST of mRNA_M-pyrifera_M_contig82707.19332.1 vs. uniprot
Match: A0A8H7SE43_9FUNG (Uncharacterized protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7SE43_9FUNG)

HSP 1 Score: 141 bits (355), Expect = 1.870e-38
Identity = 66/110 (60.00%), Postives = 86/110 (78.18%), Query Frame = 1
Query:   70 ATWLDFLLFVSYIKLAVSLIKYIPQAYLNFARRTTDGFNIYNVLLDFTGGMLSVAQLLLDSGLSGDWSGISGDPVKFGLGLCSMVFDSVFMVQHYILFPGNNAAYFRARD 399
            A W+D + ++SYIKL V+++KY+PQ ++NF R++T G++IYN+LLDFTGG+LSVAQLLLD+ LSGDWSG+SGDPVKFGLG  S+ FD  FM QHYIL+      Y    D
Sbjct:  156 AHWIDLMYYLSYIKLGVTIVKYLPQVWINFKRKSTVGWSIYNILLDFTGGVLSVAQLLLDAYLSGDWSGVSGDPVKFGLGFVSIFFDLFFMTQHYILYRDRTDYYLSTVD 265          
BLAST of mRNA_M-pyrifera_M_contig82707.19332.1 vs. uniprot
Match: A0A261XWM7_9FUNG (Uncharacterized protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XWM7_9FUNG)

HSP 1 Score: 139 bits (349), Expect = 3.380e-38
Identity = 60/96 (62.50%), Postives = 83/96 (86.46%), Query Frame = 1
Query:   76 WLDFLLFVSYIKLAVSLIKYIPQAYLNFARRTTDGFNIYNVLLDFTGGMLSVAQLLLDSGLSGDWSGISGDPVKFGLGLCSMVFDSVFMVQHYILF 363
            W+D L  +SY KLA+S++KY+PQAY N+ R++T G++I+N+LLDFTGG+LS  QL LDS ++GDWSG++G+PVKFGLGLCSM FD +F++QHYIL+
Sbjct:  143 WIDLLYHLSYFKLAISVLKYVPQAYKNYQRKSTVGWSIHNILLDFTGGILSTTQLFLDSSMTGDWSGVTGNPVKFGLGLCSMTFDVLFIIQHYILY 238          
BLAST of mRNA_M-pyrifera_M_contig82707.19332.1 vs. uniprot
Match: A0A8H7PJ97_9FUNG (Uncharacterized protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7PJ97_9FUNG)

HSP 1 Score: 139 bits (350), Expect = 6.030e-38
Identity = 69/115 (60.00%), Postives = 92/115 (80.00%), Query Frame = 1
Query:   19 TTASVVYAALVAAGAVSATWLDFLLFVSYIKLAVSLIKYIPQAYLNFARRTTDGFNIYNVLLDFTGGMLSVAQLLLDSGLSGDWSGISGDPVKFGLGLCSMVFDSVFMVQHYILF 363
            TT   V A +VA  A  A W+D L F+++IKLAVSLIKY+PQ ++N+ R++T G++I+N+LLDFTGG LS+ QLLLD+ +SGDWSG+SGDPVKFGLG  ++ FD +FM QHYIL+
Sbjct:  139 TTVVGVAAVIVAVEAGQAMWIDLLYFMAWIKLAVSLIKYLPQVWINYKRQSTVGWSIHNILLDFTGGFLSITQLLLDAWISGDWSGVSGDPVKFGLGFIAIGFDIIFMCQHYILY 253          
BLAST of mRNA_M-pyrifera_M_contig82707.19332.1 vs. uniprot
Match: S2JPP5_MUCC1 (Uncharacterized protein n=1 Tax=Mucor circinelloides f. circinelloides (strain 1006PhL) TaxID=1220926 RepID=S2JPP5_MUCC1)

HSP 1 Score: 137 bits (346), Expect = 7.780e-38
Identity = 65/98 (66.33%), Postives = 85/98 (86.73%), Query Frame = 1
Query:   70 ATWLDFLLFVSYIKLAVSLIKYIPQAYLNFARRTTDGFNIYNVLLDFTGGMLSVAQLLLDSGLSGDWSGISGDPVKFGLGLCSMVFDSVFMVQHYILF 363
            A W+D L ++SYIKL +SLIKY+PQA+LNF R++T G++I+N+LLD TGG+LS+ QLLLD+ LSGDWSG+SG+PVK GLGL S+ FD +FMVQHYIL+
Sbjct:  120 AMWIDLLYYLSYIKLTISLIKYMPQAWLNFKRKSTIGWSIHNILLDCTGGVLSITQLLLDAYLSGDWSGVSGNPVKLGLGLQSIAFDVLFMVQHYILY 217          
BLAST of mRNA_M-pyrifera_M_contig82707.19332.1 vs. uniprot
Match: A0A812NB00_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812NB00_9DINO)

HSP 1 Score: 139 bits (350), Expect = 8.130e-38
Identity = 69/116 (59.48%), Postives = 90/116 (77.59%), Query Frame = 1
Query:   34 VYAALVAAGAVSA--TWLDFLLFVSYIKLAVSLIKYIPQAYLNFARRTTDGFNIYNVLLDFTGGMLSVAQLLLDSGLSGDWSGISGDPVKFGLGLCSMVFDSVFMVQHYILFPGNN 375
            +YA ++AAG   +   WLD+++ VSY+KL V+LIKY PQ YLN++R++T G+N++NVLLDFTGG LSV Q LLD   + +W GISGDPVKF LGL SMVFD++FM QHY L+  NN
Sbjct:  157 IYAIVIAAGVQGSIFNWLDYVIGVSYVKLGVTLIKYAPQVYLNYSRQSTAGWNVWNVLLDFTGGSLSVLQQLLDCAWTNNWEGISGDPVKFALGLTSMVFDTMFMTQHYCLYAENN 272          
BLAST of mRNA_M-pyrifera_M_contig82707.19332.1 vs. uniprot
Match: E1ZNG3_CHLVA (Uncharacterized protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZNG3_CHLVA)

HSP 1 Score: 139 bits (350), Expect = 9.300e-38
Identity = 64/107 (59.81%), Postives = 87/107 (81.31%), Query Frame = 1
Query:   73 TWLDFLLFVSYIKLAVSLIKYIPQAYLNFARRTTDGFNIYNVLLDFTGGMLSVAQLLLDSGLSGDWSGISGDPVKFGLGLCSMVFDSVFMVQHYILFPGNNAAYFRA 393
            +WL FL F+SYIKLAVSL+KYIPQ +LN+ R++TDG+N++NVLLDF GG+LS+ QLL+D  ++ DWS ++G+PVKFGLG  SM+FD +FM QH++L+P   A  F A
Sbjct:  151 SWLSFLYFLSYIKLAVSLVKYIPQVWLNYKRQSTDGWNMHNVLLDFGGGLLSLVQLLMDGAVTRDWSAVTGNPVKFGLGFASMLFDLIFMAQHWLLYPAAAAGSFWA 257          
BLAST of mRNA_M-pyrifera_M_contig82707.19332.1 vs. uniprot
Match: A0A167P392_PHYB8 (Uncharacterized protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167P392_PHYB8)

HSP 1 Score: 138 bits (347), Expect = 1.160e-37
Identity = 60/96 (62.50%), Postives = 82/96 (85.42%), Query Frame = 1
Query:   76 WLDFLLFVSYIKLAVSLIKYIPQAYLNFARRTTDGFNIYNVLLDFTGGMLSVAQLLLDSGLSGDWSGISGDPVKFGLGLCSMVFDSVFMVQHYILF 363
            W+D + ++SY+KLA+S IKY+PQ +LN+ R++T G++IYN+LLDF GG LS+ QLLLD+ +SGDWSG+SGDPVKFGLG  ++ FD VF+VQHYIL+
Sbjct:  150 WIDLMYYLSYVKLAISFIKYLPQVWLNYKRKSTVGWSIYNILLDFAGGALSIGQLLLDASISGDWSGVSGDPVKFGLGFVAIAFDLVFIVQHYILY 245          
BLAST of mRNA_M-pyrifera_M_contig82707.19332.1 vs. uniprot
Match: A0A163J2I2_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163J2I2_ABSGL)

HSP 1 Score: 137 bits (346), Expect = 1.160e-37
Identity = 64/108 (59.26%), Postives = 85/108 (78.70%), Query Frame = 1
Query:   76 WLDFLLFVSYIKLAVSLIKYIPQAYLNFARRTTDGFNIYNVLLDFTGGMLSVAQLLLDSGLSGDWSGISGDPVKFGLGLCSMVFDSVFMVQHYILFPGNNAAYFRARD 399
            W+D L F+SYIKLA+S IKYIPQ ++N+ R++T G++I+N++LDFTGG+LSVAQL+LD+ LSGDWSGI+GDPVKFGLG  ++ FD +FM QHYI +      Y    D
Sbjct:  153 WIDVLYFLSYIKLAISFIKYIPQLWMNYRRKSTIGWSIHNIILDFTGGLLSVAQLVLDAALSGDWSGITGDPVKFGLGFVAIAFDLLFMSQHYIFYRERFDYYLATED 260          
BLAST of mRNA_M-pyrifera_M_contig82707.19332.1 vs. uniprot
Match: A0A1Y2GNI0_9FUNG (PQ loop repeat-domain-containing protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GNI0_9FUNG)

HSP 1 Score: 139 bits (350), Expect = 1.210e-37
Identity = 64/106 (60.38%), Postives = 85/106 (80.19%), Query Frame = 1
Query:   67 SATWLDFLLFVSYIKLAVSLIKYIPQAYLNFARRTTDGFNIYNVLLDFTGGMLSVAQLLLDSGLSGDWSGISGDPVKFGLGLCSMVFDSVFMVQHYILFPGNNAAY 384
            S+ W+D L ++SYIKL +S IKY PQ YLN++ ++T G++++NVLLDFTGG+LS+ QL+LD+ LSGDWSGISGDPVKFGLGL S++FD VF+ QHYI +      Y
Sbjct:  150 SSQWIDLLYYLSYIKLGISFIKYCPQVYLNYSAQSTVGWSVHNVLLDFTGGVLSITQLILDAALSGDWSGISGDPVKFGLGLLSILFDLVFITQHYIFYRNREDFY 255          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82707.19332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A068RS72_9FUNG3.260e-3960.00Lysosomal cystine transporter family n=2 Tax=Licht... [more]
A0A8H7SE43_9FUNG1.870e-3860.00Uncharacterized protein n=1 Tax=Mucor circinatus T... [more]
A0A261XWM7_9FUNG3.380e-3862.50Uncharacterized protein n=1 Tax=Bifiguratus adelai... [more]
A0A8H7PJ97_9FUNG6.030e-3860.00Uncharacterized protein n=1 Tax=Umbelopsis vinacea... [more]
S2JPP5_MUCC17.780e-3866.33Uncharacterized protein n=1 Tax=Mucor circinelloid... [more]
A0A812NB00_9DINO8.130e-3859.48Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
E1ZNG3_CHLVA9.300e-3859.81Uncharacterized protein (Fragment) n=1 Tax=Chlorel... [more]
A0A167P392_PHYB81.160e-3762.50Uncharacterized protein n=1 Tax=Phycomyces blakesl... [more]
A0A163J2I2_ABSGL1.160e-3759.26Uncharacterized protein n=1 Tax=Absidia glauca Tax... [more]
A0A1Y2GNI0_9FUNG1.210e-3760.38PQ loop repeat-domain-containing protein n=1 Tax=L... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82707contigM-pyrifera_M_contig82707:16..414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score139.0
Seed ortholog evalue1.6e-30
Seed eggNOG ortholog554065.XP_005844704.1
KEGG koko:K12386
KEGG Pathwayko04142,map04142
Hectar predicted targeting categorysignal peptide
GOsGO:0000099,GO:0000101,GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015179,GO:0015184,GO:0015318,GO:0015711,GO:0015804,GO:0015807,GO:0015811,GO:0015849,GO:0016020,GO:0022857,GO:0031090,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0072337,GO:0072348,GO:0072349,GO:0098588,GO:0098656,GO:0098805,GO:1901682,GO:1902475,GO:1903825,GO:1905039
EggNOG free text desc.Cystinosin homolog
EggNOG OGs37S1S@33090,KOG3145@1,KOG3145@2759
COG Functional cat.E
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04147
Exons1
Model size399
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816734.1018083-CDS-M-pyrifera_M_contig82707:15..4141622816734.1018083-CDS-M-pyrifera_M_contig82707:15..414Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82707 16..414 +
1692278146.9262345-CDS-M-pyrifera_M_contig82707:15..4141692278146.9262345-CDS-M-pyrifera_M_contig82707:15..414Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82707 16..414 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82707.19332.1prot_M-pyrifera_M_contig82707.19332.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82707 16..414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82707.19332.1

>prot_M-pyrifera_M_contig82707.19332.1 ID=prot_M-pyrifera_M_contig82707.19332.1|Name=mRNA_M-pyrifera_M_contig82707.19332.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
VVLSAGTTASVVYAALVAAGAVSATWLDFLLFVSYIKLAVSLIKYIPQAY
LNFARRTTDGFNIYNVLLDFTGGMLSVAQLLLDSGLSGDWSGISGDPVKF
GLGLCSMVFDSVFMVQHYILFPGNNAAYFRARD
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mRNA from alignment at M-pyrifera_M_contig82707:16..414+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82707.19332.1 ID=mRNA_M-pyrifera_M_contig82707.19332.1|Name=mRNA_M-pyrifera_M_contig82707.19332.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=399bp|location=Sequence derived from alignment at M-pyrifera_M_contig82707:16..414+ (Macrocystis pyrifera P11B4 male)
GTGGTGCTGTCGGCAGGTACAACGGCATCGGTGGTATATGCGGCACTGGT GGCGGCGGGTGCGGTGTCGGCCACGTGGCTCGACTTTCTGCTCTTCGTGT CCTACATCAAGCTCGCCGTCTCGCTCATCAAGTACATCCCGCAGGCCTAC CTCAACTTTGCGCGGCGCACCACCGACGGATTCAACATCTACAACGTGCT CCTCGACTTCACGGGCGGAATGCTCTCCGTGGCACAGCTCCTCCTTGACT CGGGCCTCAGCGGAGACTGGAGTGGGATCTCAGGAGACCCAGTCAAATTC GGACTCGGCCTGTGCAGCATGGTCTTCGACTCGGTCTTCATGGTGCAGCA CTACATCCTCTTCCCAGGGAACAACGCAGCCTACTTCAGGGCCAGGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82707:16..414+

>mRNA_M-pyrifera_M_contig82707.19332.1 ID=mRNA_M-pyrifera_M_contig82707.19332.1|Name=mRNA_M-pyrifera_M_contig82707.19332.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig82707:16..414+ (Macrocystis pyrifera P11B4 male)
GTGGTGCTGTCGGCAGGTACAACGGCATCGGTGGTATATGCGGCACTGGT
GGCGGCGGGTGCGGTGTCGGCCACGTGGCTCGACTTTCTGCTCTTCGTGT
CCTACATCAAGCTCGCCGTCTCGCTCATCAAGTACATCCCGCAGGCCTAC
CTCAACTTTGCGCGGCGCACCACCGACGGATTCAACATCTACAACGTGCT
CCTCGACTTCACGGGCGGAATGCTCTCCGTGGCACAGCTCCTCCTTGACT
CGGGCCTCAGCGGAGACTGGAGTGGGATCTCAGGAGACCCAGTCAAATTC
GGACTCGGCCTGTGCAGCATGGTCTTCGACTCGGTCTTCATGGTGCAGCA
CTACATCCTCTTCCCAGGGAACAACGCAGCCTACTTCAGGGCCAGGGACG
TGGTGCTGTCGGCAGGTACAACGGCATCGGTGGTATATGCGGCACTGGTG
GCGGCGGGTGCGGTGTCGGCCACGTGGCTCGACTTTCTGCTCTTCGTGTC
CTACATCAAGCTCGCCGTCTCGCTCATCAAGTACATCCCGCAGGCCTACC
TCAACTTTGCGCGGCGCACCACCGACGGATTCAACATCTACAACGTGCTC
CTCGACTTCACGGGCGGAATGCTCTCCGTGGCACAGCTCCTCCTTGACTC
GGGCCTCAGCGGAGACTGGAGTGGGATCTCAGGAGACCCAGTCAAATTCG
GACTCGGCCTGTGCAGCATGGTCTTCGACTCGGTCTTCATGGTGCAGCAC
TACATCCTCTTCCCAGGGAACAACGCAGCCTACTTCAGGGCCAGGGAC
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