mRNA_M-pyrifera_M_contig82700.19331.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82700.19331.1
Unique NamemRNA_M-pyrifera_M_contig82700.19331.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig82700.19331.1 vs. uniprot
Match: A0A7S1C2H6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C2H6_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 4.710e-14
Identity = 49/131 (37.40%), Postives = 72/131 (54.96%), Query Frame = 1 
Query:   22 SPHLRNLCLIAAATTFLGRVLARRMFRVDLEL----GGTFSLLLGTFWLLWYHFFVVERPLLEFTRTLGNLHTLSRLSPRLTFRPHPLFNPHLQTVLLNALNALDAYLQPYSGYRRQTIKSADG-NDVHLD 399
            S H+RNL  I+   + +    ARR+  +   L     G F++    FW L+Y +FVVERP++ F R++ N+  + R   R  +     FN H QTVL N LN LD +L P++ YRR+ + + D  N V LD
Sbjct:   61 SKHVRNLGGISLVLSLVTHRAARRLLFLPRGLRDGLSGAFTMWFLVFWFLYYRYFVVERPVILFQRSMWNMAIMERFRVRRFYPVFWGFNFHAQTVLCNGLNVLDEWLTPFAKYRRELLPAHDPPNHVVLD 191
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82700.19331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S1C2H6_9STRA4.710e-1437.40Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82700contigM-pyrifera_M_contig82700:17..427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816734.0668826-CDS-M-pyrifera_M_contig82700:16..4271622816734.0668826-CDS-M-pyrifera_M_contig82700:16..427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82700 17..427 -
1692278146.9055746-CDS-M-pyrifera_M_contig82700:16..4271692278146.9055746-CDS-M-pyrifera_M_contig82700:16..427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82700 17..427 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82700.19331.1prot_M-pyrifera_M_contig82700.19331.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82700 17..427 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82700.19331.1

>prot_M-pyrifera_M_contig82700.19331.1 ID=prot_M-pyrifera_M_contig82700.19331.1|Name=mRNA_M-pyrifera_M_contig82700.19331.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
SILVSVRSPHLRNLCLIAAATTFLGRVLARRMFRVDLELGGTFSLLLGTF
WLLWYHFFVVERPLLEFTRTLGNLHTLSRLSPRLTFRPHPLFNPHLQTVL
LNALNALDAYLQPYSGYRRQTIKSADGNDVHLDWVSG
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mRNA from alignment at M-pyrifera_M_contig82700:17..427-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82700.19331.1 ID=mRNA_M-pyrifera_M_contig82700.19331.1|Name=mRNA_M-pyrifera_M_contig82700.19331.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig82700:17..427- (Macrocystis pyrifera P11B4 male)
TCAATTCTAGTGAGTGTTCGCAGTCCTCACTTGAGAAATTTGTGTCTCAT
CGCGGCAGCAACCACGTTTTTAGGGCGCGTCTTGGCTCGTCGAATGTTTC
GGGTAGATCTTGAGCTTGGTGGAACATTCAGTTTACTGTTGGGGACGTTT
TGGTTACTGTGGTATCATTTCTTTGTCGTTGAACGTCCCTTGTTGGAATT
TACGCGCACATTGGGCAATCTCCACACTCTCTCGCGCCTTTCTCCTCGAC
TCACGTTTCGTCCACATCCGCTCTTCAACCCACACCTCCAAACAGTGTTA
CTGAACGCACTAAACGCGCTGGATGCGTACCTCCAACCCTACTCTGGCTA
TCGCCGGCAAACGATCAAAAGCGCAGATGGCAACGACGTTCACTTGGATT
GGGTCAGTGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82700:17..427-

>mRNA_M-pyrifera_M_contig82700.19331.1 ID=mRNA_M-pyrifera_M_contig82700.19331.1|Name=mRNA_M-pyrifera_M_contig82700.19331.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig82700:17..427- (Macrocystis pyrifera P11B4 male)
TCAATTCTAGTGAGTGTTCGCAGTCCTCACTTGAGAAATTTGTGTCTCAT
CGCGGCAGCAACCACGTTTTTAGGGCGCGTCTTGGCTCGTCGAATGTTTC
GGGTAGATCTTGAGCTTGGTGGAACATTCAGTTTACTGTTGGGGACGTTT
TGGTTACTGTGGTATCATTTCTTTGTCGTTGAACGTCCCTTGTTGGAATT
TACGCGCACATTGGGCAATCTCCACACTCTCTCGCGCCTTTCTCCTCGAC
TCACGTTTCGTCCACATCCGCTCTTCAACCCACACCTCCAAACAGTGTTA
CTGAACGCACTAAACGCGCTGGATGCGTACCTCCAACCCTACTCTGGCTA
TCGCCGGCAAACGATCAAAAGCGCAGATGGCAACGACGTTCACTTGGATT
GGGTCAGTGGATCAATTCTAGTGAGTGTTCGCAGTCCTCACTTGAGAAAT
TTGTGTCTCATCGCGGCAGCAACCACGTTTTTAGGGCGCGTCTTGGCTCG
TCGAATGTTTCGGGTAGATCTTGAGCTTGGTGGAACATTCAGTTTACTGT
TGGGGACGTTTTGGTTACTGTGGTATCATTTCTTTGTCGTTGAACGTCCC
TTGTTGGAATTTACGCGCACATTGGGCAATCTCCACACTCTCTCGCGCCT
TTCTCCTCGACTCACGTTTCGTCCACATCCGCTCTTCAACCCACACCTCC
AAACAGTGTTACTGAACGCACTAAACGCGCTGGATGCGTACCTCCAACCC
TACTCTGGCTATCGCCGGCAAACGATCAAAAGCGCAGATGGCAACGACGT
TCACTTGGATTGGGTCAGTGGA
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