mRNA_M-pyrifera_M_contig82696.19327.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82696.19327.1
Unique NamemRNA_M-pyrifera_M_contig82696.19327.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig82696.19327.1 vs. uniprot
Match: RL31_CYAPA (60S ribosomal protein L31 n=1 Tax=Cyanophora paradoxa TaxID=2762 RepID=RL31_CYAPA)

HSP 1 Score: 121 bits (304), Expect = 1.510e-33
Identity = 62/104 (59.62%), Postives = 84/104 (80.77%), Query Frame = 1 
Query:   13 TVDATINLHKRLHKVGFKKRARKAVKAVREFAADLMRTSDVRVDPTLNRYIWNKGVRNVPRRVRVRMIRKVKEGEEEDGEKLYTVVTHVGVPSFKGLKTEEAKA 324
            T + TINLHKRLH VGFKKRA +AVK +++FA+ +M T+DVRVDP LN+++WN+G+R+VP RVRVR+ RK +  +E+  EKLYT+VT+V V SFKGL+T+   A
Sbjct:   16 TREYTINLHKRLHGVGFKKRAPRAVKEIKKFASKIMGTTDVRVDPRLNKFVWNQGIRSVPYRVRVRLARK-RNDDEDAKEKLYTLVTYVPVTSFKGLQTQNVDA 118
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BLAST of mRNA_M-pyrifera_M_contig82696.19327.1 vs. uniprot
Match: A0A7R9LE55_9ACAR (60S ribosomal protein L31 n=1 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9LE55_9ACAR)

HSP 1 Score: 119 bits (297), Expect = 2.020e-32
Identity = 60/100 (60.00%), Postives = 79/100 (79.00%), Query Frame = 1 
Query:   13 TVDATINLHKRLHKVGFKKRARKAVKAVREFAADLMRTSDVRVDPTLNRYIWNKGVRNVPRRVRVRMIRKVKEGEEEDGEKLYTVVTHVGVPSFKGLKTE 312
            T + T++LHKRLH VGFKK+A +A+K +R FA+  M T DVR+D  LN+Y+W+KG+RNVP RVRVR+ R+  E +E+   KLYT+VTHV VPSFKGL+TE
Sbjct:   20 TREYTVHLHKRLHGVGFKKKAPRAIKEIRRFASKHMGTVDVRIDTRLNKYLWSKGIRNVPYRVRVRLARRRNE-DEDSPNKLYTLVTHVAVPSFKGLQTE 118
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BLAST of mRNA_M-pyrifera_M_contig82696.19327.1 vs. uniprot
Match: A0A7S2UWG1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWG1_9STRA)

HSP 1 Score: 117 bits (292), Expect = 9.480e-32
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 1 
Query:   19 DATINLHKRLHKVGFKKRARKAVKAVREFAADLMRTSDVRVDPTLNRYIWNKGVRNVPRRVRVRMIRKVKEGEEEDGEKLYTVVTHVGVPSFKGLKTEEAKA 324
            D TINLHKR++K+ FKKRA + ++ +++FA+  M TSDVR+D  LN++IW+KGVRNVP RVRVR+ RK  E +EE  EKLYT+V HV V SFKGL+TE   A
Sbjct:   17 DYTINLHKRMYKITFKKRAPRCIREIKQFASKAMGTSDVRIDAKLNKFIWSKGVRNVPYRVRVRLSRKRNE-DEEAKEKLYTLVQHVEVTSFKGLQTENVDA 117
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BLAST of mRNA_M-pyrifera_M_contig82696.19327.1 vs. uniprot
Match: F0YCW2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCW2_AURAN)

HSP 1 Score: 116 bits (291), Expect = 1.270e-31
Identity = 60/100 (60.00%), Postives = 78/100 (78.00%), Query Frame = 1 
Query:   13 TVDATINLHKRLHKVGFKKRARKAVKAVREFAADLMRTSDVRVDPTLNRYIWNKGVRNVPRRVRVRMIRKVKEGEEEDGEKLYTVVTHVGVPSFKGLKTE 312
            T D T+NLHKRLH + FKK+A +AV+ +++FA  +M+TSDVRVD  LN+++W+KG+RNVP RVRVR+ RK  E +EE  EKLYT+V HV V S KGL TE
Sbjct:   12 TRDYTVNLHKRLHGITFKKKAPRAVREIKKFAQSMMKTSDVRVDAKLNKFLWSKGIRNVPTRVRVRLSRKRNE-DEEASEKLYTLVQHVEVTSVKGLNTE 110
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BLAST of mRNA_M-pyrifera_M_contig82696.19327.1 vs. uniprot
Match: A0A7S2L691_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2L691_9DINO)

HSP 1 Score: 117 bits (293), Expect = 1.600e-31
Identity = 65/106 (61.32%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:    4 EPRTVDATINLHKRLHKVGFKKRARKAVKAVREFAADLMRTSDVRVDPTLNRYIWNKGVRNVPRRVRVRMIRKVKEGEEEDGEKLYTVVTHVGVPSFKGLKTEEAK 321
            EP T D TI+LHK LHKV FKKRA +A++ +R+FAA  M T DVRVD  LN++IW+ GVRNVP RVRVRM RK  E +EE  EK +T+V HV V SFKGL+TE  +
Sbjct:   41 EPVTRDYTIHLHKLLHKVQFKKRAPRAIREIRKFAARAMTTKDVRVDTKLNKFIWSNGVRNVPTRVRVRMSRKRNE-DEEAKEKTFTLVQHVPVESFKGLQTETVR 145
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BLAST of mRNA_M-pyrifera_M_contig82696.19327.1 vs. uniprot
Match: A0A812MRN1_9DINO (RPL31 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812MRN1_9DINO)

HSP 1 Score: 115 bits (289), Expect = 3.050e-31
Identity = 59/106 (55.66%), Postives = 80/106 (75.47%), Query Frame = 1 
Query:    4 EPRTVDATINLHKRLHKVGFKKRARKAVKAVREFAADLMRTSDVRVDPTLNRYIWNKGVRNVPRRVRVRMIRKVKEGEEEDGEKLYTVVTHVGVPSFKGLKTEEAK 321
            EP T D TI+LHK + K+ FKKRA +AV+ VR+FA  +M T DVR+D  LN+++W+ G+RNVPRRVRVR+ RK  E +E+  EK++T+V HV V SFKGL+TE  +
Sbjct:   15 EPATRDYTIHLHKHMQKISFKKRAPRAVRVVRQFANKVMMTKDVRIDTKLNKFLWSNGIRNVPRRVRVRLSRKRSE-DEDAKEKMFTLVQHVPVESFKGLQTENVR 119
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BLAST of mRNA_M-pyrifera_M_contig82696.19327.1 vs. uniprot
Match: A0A078ALR3_STYLE (Uncharacterized protein n=3 Tax=Oxytrichidae TaxID=57506 RepID=A0A078ALR3_STYLE)

HSP 1 Score: 115 bits (288), Expect = 3.730e-31
Identity = 60/105 (57.14%), Postives = 82/105 (78.10%), Query Frame = 1 
Query:    4 EPRTVDATINLHKRLHKVGFKKRARKAVKAVREFAADLMRTSDVRVDPTLNRYIWNKGVRNVPRRVRVRMIRKVKEGEEEDGEKLYTVVTHVGVPSFKGLKTEEA 318
            +P T D TINLHKRLH + FKKRA +A++ +R+FA   M T DVRVD +LNR++W++G+RNVPR+VRVR+ RK  E +E+  EK Y++V H+ V SF+GLKTE+A
Sbjct:   13 QPVTRDYTINLHKRLHGIQFKKRAPRAIREIRKFAVAEMFTKDVRVDTSLNRFLWSQGIRNVPRKVRVRISRKKNE-DEDAKEKFYSLVQHLQVDSFEGLKTEKA 116
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BLAST of mRNA_M-pyrifera_M_contig82696.19327.1 vs. uniprot
Match: A0A7S2ACN3_9DINO (Hypothetical protein n=2 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2ACN3_9DINO)

HSP 1 Score: 116 bits (291), Expect = 4.270e-31
Identity = 61/103 (59.22%), Postives = 79/103 (76.70%), Query Frame = 1 
Query:    4 EPRTVDATINLHKRLHKVGFKKRARKAVKAVREFAADLMRTSDVRVDPTLNRYIWNKGVRNVPRRVRVRMIRKVKEGEEEDGEKLYTVVTHVGVPSFKGLKTE 312
            EP T D TI+LHK LHK+ FKKRA +AV+ +R+FAA +M T DVR+D  LN+++W+KG+RNVPRRVRVRM RK +  +EE  EK +T+  HV V SFK L+TE
Sbjct:   51 EPVTRDYTIHLHKVLHKISFKKRAPRAVREIRKFAAKVMLTKDVRIDTKLNKFVWSKGIRNVPRRVRVRMSRK-RNDDEEATEKTFTLCQHVPVESFKSLQTE 152
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BLAST of mRNA_M-pyrifera_M_contig82696.19327.1 vs. uniprot
Match: A7S786_NEMVE (60S ribosomal protein L31 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7S786_NEMVE)

HSP 1 Score: 115 bits (288), Expect = 4.580e-31
Identity = 57/104 (54.81%), Postives = 81/104 (77.88%), Query Frame = 1 
Query:   13 TVDATINLHKRLHKVGFKKRARKAVKAVREFAADLMRTSDVRVDPTLNRYIWNKGVRNVPRRVRVRMIRKVKEGEEEDGEKLYTVVTHVGVPSFKGLKTEEAKA 324
            T + TINLHKR+H +GFKKRA +A+K +R+FA  +M T DVR+D  LN+++WN+G+RNVP RVRVR+ RK  E +E+   KLYT+VT V V +FKGL+T++ ++
Sbjct:   19 TREYTINLHKRIHGIGFKKRAPRAIKEIRKFAEKMMGTPDVRIDTRLNKHVWNQGIRNVPYRVRVRLARKRNE-DEDSPHKLYTLVTSVAVSTFKGLQTQKVES 121
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BLAST of mRNA_M-pyrifera_M_contig82696.19327.1 vs. uniprot
Match: UPI000C6D4D1A (60S ribosomal protein L31 n=2 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6D4D1A)

HSP 1 Score: 115 bits (288), Expect = 4.720e-31
Identity = 60/100 (60.00%), Postives = 78/100 (78.00%), Query Frame = 1 
Query:   13 TVDATINLHKRLHKVGFKKRARKAVKAVREFAADLMRTSDVRVDPTLNRYIWNKGVRNVPRRVRVRMIRKVKEGEEEDGEKLYTVVTHVGVPSFKGLKTE 312
            T + TI++HKRLH +GFKKRA +A+K +R+FA   M T DVR+D  LN+++W+KGVRNVP RVRVR+ RK  E +E+   KLYT+VTHV V SFKGL+TE
Sbjct:   19 TREYTIHVHKRLHGIGFKKRAPRAIKEIRKFAEKQMGTPDVRIDTRLNKFVWSKGVRNVPYRVRVRLSRKRNE-DEDSPHKLYTLVTHVPVASFKGLQTE 117
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82696.19327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
RL31_CYAPA1.510e-3359.6260S ribosomal protein L31 n=1 Tax=Cyanophora parad... [more]
A0A7R9LE55_9ACAR2.020e-3260.0060S ribosomal protein L31 n=1 Tax=Oppiella nova Ta... [more]
A0A7S2UWG1_9STRA9.480e-3259.80Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0YCW2_AURAN1.270e-3160.00Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2L691_9DINO1.600e-3161.32Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A0A812MRN1_9DINO3.050e-3155.66RPL31 protein n=1 Tax=Symbiodinium sp. CCMP2456 Ta... [more]
A0A078ALR3_STYLE3.730e-3157.14Uncharacterized protein n=3 Tax=Oxytrichidae TaxID... [more]
A0A7S2ACN3_9DINO4.270e-3159.22Hypothetical protein n=2 Tax=Alexandrium andersoni... [more]
A7S786_NEMVE4.580e-3154.8160S ribosomal protein L31 n=1 Tax=Nematostella vec... [more]
UPI000C6D4D1A4.720e-3160.0060S ribosomal protein L31 n=2 Tax=Centruroides scu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82696contigM-pyrifera_M_contig82696:163..489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue5.2e-24
Seed eggNOG ortholog44056.XP_009038340.1
Preferred nameRPL31
KEGG rclassRC00010
KEGG koko:K02910,ko:K13566,ko:K17433
KEGG ReactionR00269,R00348
KEGG Pathwayko00250,ko03010,map00250,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006412,GO:0006450,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0022625,GO:0022626,GO:0030054,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0055044,GO:0065007,GO:0065008,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG2097@1,KOG0893@2759
EC3.5.1.3
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Exons1
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816733.638888-CDS-M-pyrifera_M_contig82696:162..4891622816733.638888-CDS-M-pyrifera_M_contig82696:162..489Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82696 163..489 -
1692278146.5599236-CDS-M-pyrifera_M_contig82696:162..4891692278146.5599236-CDS-M-pyrifera_M_contig82696:162..489Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82696 163..489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82696.19327.1prot_M-pyrifera_M_contig82696.19327.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82696 163..489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82696.19327.1

>prot_M-pyrifera_M_contig82696.19327.1 ID=prot_M-pyrifera_M_contig82696.19327.1|Name=mRNA_M-pyrifera_M_contig82696.19327.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
TEPRTVDATINLHKRLHKVGFKKRARKAVKAVREFAADLMRTSDVRVDPT
LNRYIWNKGVRNVPRRVRVRMIRKVKEGEEEDGEKLYTVVTHVGVPSFKG
LKTEEAKA*
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mRNA from alignment at M-pyrifera_M_contig82696:163..489-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82696.19327.1 ID=mRNA_M-pyrifera_M_contig82696.19327.1|Name=mRNA_M-pyrifera_M_contig82696.19327.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig82696:163..489- (Macrocystis pyrifera P11B4 male)
ACAGAGCCACGCACTGTTGATGCTACGATCAACTTGCACAAGCGGTTGCA
CAAGGTTGGTTTCAAGAAGCGGGCACGCAAGGCTGTCAAGGCAGTGCGTG
AGTTCGCTGCTGATTTGATGCGCACCTCTGATGTGCGTGTAGACCCTACC
TTGAACCGCTACATCTGGAACAAGGGTGTGCGCAACGTGCCACGCCGTGT
GAGGGTGCGCATGATCCGAAAGGTCAAGGAAGGTGAGGAGGAAGATGGGG
AGAAGCTTTACACCGTTGTCACCCACGTCGGAGTCCCATCCTTCAAGGGC
CTCAAGACTGAGGAAGCAAAGGCATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82696:163..489-

>mRNA_M-pyrifera_M_contig82696.19327.1 ID=mRNA_M-pyrifera_M_contig82696.19327.1|Name=mRNA_M-pyrifera_M_contig82696.19327.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig82696:163..489- (Macrocystis pyrifera P11B4 male)
ACAGAGCCACGCACTGTTGATGCTACGATCAACTTGCACAAGCGGTTGCA
CAAGGTTGGTTTCAAGAAGCGGGCACGCAAGGCTGTCAAGGCAGTGCGTG
AGTTCGCTGCTGATTTGATGCGCACCTCTGATGTGCGTGTAGACCCTACC
TTGAACCGCTACATCTGGAACAAGGGTGTGCGCAACGTGCCACGCCGTGT
GAGGGTGCGCATGATCCGAAAGGTCAAGGAAGGTGAGGAGGAAGATGGGG
AGAAGCTTTACACCGTTGTCACCCACGTCGGAGTCCCATCCTTCAAGGGC
CTCAAGACTGAGGAAGCAAAGGCATAAACAGAGCCACGCACTGTTGATGC
TACGATCAACTTGCACAAGCGGTTGCACAAGGTTGGTTTCAAGAAGCGGG
CACGCAAGGCTGTCAAGGCAGTGCGTGAGTTCGCTGCTGATTTGATGCGC
ACCTCTGATGTGCGTGTAGACCCTACCTTGAACCGCTACATCTGGAACAA
GGGTGTGCGCAACGTGCCACGCCGTGTGAGGGTGCGCATGATCCGAAAGG
TCAAGGAAGGTGAGGAGGAAGATGGGGAGAAGCTTTACACCGTTGTCACC
CACGTCGGAGTCCCATCCTTCAAGGGCCTCAAGACTGAGGAAGCAAAGGC
ATAA
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