prot_M-pyrifera_M_contig82669.19322.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig82669.19322.1
Unique Nameprot_M-pyrifera_M_contig82669.19322.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length69
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig82669.19322.1 vs. uniprot
Match: D8LIV8_ECTSI (Cir_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIV8_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 4.070e-26
Identity = 54/64 (84.38%), Postives = 57/64 (89.06%), Query Frame = 0 
Query:    1 HPATTWNQKKIWEAEQKDAKNKKDEAAANKELKRDSDRRFYEHLAGGKEQDPSSTALNFMYAPP 64
            HPATTWNQKKIWEAEQ D K KKDEA+ANKELKRDSDRRFYE+LAGGK QD S+ ALNFMY PP
Sbjct:   43 HPATTWNQKKIWEAEQADLKQKKDEASANKELKRDSDRRFYENLAGGKPQDASAAALNFMYNPP 106
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82669.19322.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIV8_ECTSI4.070e-2684.38Cir_N domain-containing protein n=2 Tax=Ectocarpus... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 9..29
NoneNo IPR availablePANTHERPTHR13151:SF2COREPRESSOR INTERACTING WITH RBPJ 1coord: 1..69
IPR019339CBF1-interacting co-repressor CIR, N-terminal domainPFAMPF10197Cir_Ncoord: 1..33
e-value: 1.9E-7
score: 31.2
IPR040014Corepressor interacting with RBPJ 1PANTHERPTHR13151CBF1 INTERACTING COREPRESSOR CIRcoord: 1..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82669contigM-pyrifera_M_contig82669:461..667 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82669.19322.1mRNA_M-pyrifera_M_contig82669.19322.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig82669 461..667 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig82669.19322.1 ID=prot_M-pyrifera_M_contig82669.19322.1|Name=mRNA_M-pyrifera_M_contig82669.19322.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
HPATTWNQKKIWEAEQKDAKNKKDEAAANKELKRDSDRRFYEHLAGGKEQ
DPSSTALNFMYAPPPGFQQ
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019339CIR_N_dom
IPR040014CIR1