mRNA_M-pyrifera_M_contig82669.19322.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82669.19322.1
Unique NamemRNA_M-pyrifera_M_contig82669.19322.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig82669.19322.1 vs. uniprot
Match: D8LIV8_ECTSI (Cir_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIV8_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 4.070e-26
Identity = 54/64 (84.38%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:    1 HPATTWNQKKIWEAEQKDAKNKKDEAAANKELKRDSDRRFYEHLAGGKEQDPSSTALNFMYAPP 192
            HPATTWNQKKIWEAEQ D K KKDEA+ANKELKRDSDRRFYE+LAGGK QD S+ ALNFMY PP
Sbjct:   43 HPATTWNQKKIWEAEQADLKQKKDEASANKELKRDSDRRFYENLAGGKPQDASAAALNFMYNPP 106
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82669.19322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIV8_ECTSI4.070e-2684.38Cir_N domain-containing protein n=2 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82669contigM-pyrifera_M_contig82669:461..667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue5.3e-22
Seed eggNOG ortholog2880.D8LIV8
Preferred nameCIR1
KEGG koko:K06066,ko:K14558
KEGG Pathwayko03008,ko04330,map03008,map04330
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000981,GO:0003006,GO:0003674,GO:0003676,GO:0003700,GO:0003705,GO:0003712,GO:0003714,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005815,GO:0005856,GO:0006139,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0007276,GO:0007281,GO:0007292,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015630,GO:0016070,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0019219,GO:0019222,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034641,GO:0042826,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043621,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051704,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0097159,GO:0140110,GO:1901360,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.RNA splicing
EggNOG OGsKOG3794@1,KOG3794@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816733.4672608-CDS-M-pyrifera_M_contig82669:460..6671622816733.4672608-CDS-M-pyrifera_M_contig82669:460..667Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82669 461..667 -
1692278146.497088-CDS-M-pyrifera_M_contig82669:460..6671692278146.497088-CDS-M-pyrifera_M_contig82669:460..667Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82669 461..667 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82669.19322.1prot_M-pyrifera_M_contig82669.19322.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82669 461..667 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82669.19322.1

>prot_M-pyrifera_M_contig82669.19322.1 ID=prot_M-pyrifera_M_contig82669.19322.1|Name=mRNA_M-pyrifera_M_contig82669.19322.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
HPATTWNQKKIWEAEQKDAKNKKDEAAANKELKRDSDRRFYEHLAGGKEQ
DPSSTALNFMYAPPPGFQQ
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mRNA from alignment at M-pyrifera_M_contig82669:461..667-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82669.19322.1 ID=mRNA_M-pyrifera_M_contig82669.19322.1|Name=mRNA_M-pyrifera_M_contig82669.19322.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig82669:461..667- (Macrocystis pyrifera P11B4 male)
CATCCGGCCACCACCTGGAACCAGAAGAAAATCTGGGAGGCCGAGCAGAA
GGACGCCAAGAATAAGAAGGACGAAGCGGCCGCCAACAAGGAGCTGAAGA
GAGACAGTGACAGACGCTTCTACGAGCACCTGGCCGGAGGCAAGGAGCAG
GACCCGTCCTCGACTGCTCTGAACTTCATGTACGCTCCGCCTCCCGGGTT
TCAGCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82669:461..667-

>mRNA_M-pyrifera_M_contig82669.19322.1 ID=mRNA_M-pyrifera_M_contig82669.19322.1|Name=mRNA_M-pyrifera_M_contig82669.19322.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig82669:461..667- (Macrocystis pyrifera P11B4 male)
CATCCGGCCACCACCTGGAACCAGAAGAAAATCTGGGAGGCCGAGCAGAA
GGACGCCAAGAATAAGAAGGACGAAGCGGCCGCCAACAAGGAGCTGAAGA
GAGACAGTGACAGACGCTTCTACGAGCACCTGGCCGGAGGCAAGGAGCAG
GACCCGTCCTCGACTGCTCTGAACTTCATGTACGCTCCGCCTCCCGGGTT
TCAGCAGCATCCGGCCACCACCTGGAACCAGAAGAAAATCTGGGAGGCCG
AGCAGAAGGACGCCAAGAATAAGAAGGACGAAGCGGCCGCCAACAAGGAG
CTGAAGAGAGACAGTGACAGACGCTTCTACGAGCACCTGGCCGGAGGCAA
GGAGCAGGACCCGTCCTCGACTGCTCTGAACTTCATGTACGCTCCGCCTC
CCGGGTTTCAGCAG
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