mRNA_M-pyrifera_M_contig82635.19315.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82635.19315.1
Unique NamemRNA_M-pyrifera_M_contig82635.19315.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82635.19315.1 vs. uniprot
Match: A0A5A8EIS0_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EIS0_CAFRO)

HSP 1 Score: 236 bits (603), Expect = 7.130e-72
Identity = 119/244 (48.77%), Postives = 168/244 (68.85%), Query Frame = 1
Query:    1 YRQPGLQVHVIRILWMVPVYAVESFLSLFFTEYALFFETIRDSFEAFVIYSFLQLLLNYVGSEARLSDRLRHKPSSVGRHLPPCSWCLREWRLGRDFVQRCKEGVLQYVVIKLLCTAAVVALELNGKYAEGSLQP-DRGYLYVTLLSNFSQIWAIYALVMFYQATKEELAGIKPFPKFTVIKAVVFFSWWQSVAISIAAEMGYIRGGQGYSRLEVAKALQNLLICVEMLVAAVAHRSIFNVKEF 729
            ++QP LQ HV+R+L++  V+++ S+L L F E AL  ET+RD +EAF IYSF   LL   G EA L+ RLR KP+S GRH+ P + CL+ W LG   ++RCK GVLQYVV++L+ TA  + LE  G +AEG L   DRGY+YVT ++N SQ+ A+Y L++  QA  EEL  ++ +PK   +KAV+FF WWQ +A+++  ++G +    G++  EVAK +QNLLI +EML AA+AHR  F V +F
Sbjct:   78 FKQPRLQKHVVRVLFLPVVFSISSYLCLVFREAALTVETLRDGYEAFAIYSFTAFLLEAAGGEAALAARLRAKPASAGRHIFPMNHCLQPWPLGAVLLRRCKAGVLQYVVVRLVLTAVTLVLEGQGVFAEGELARFDRGYVYVTAIANMSQMTAVYCLLLLLQAAHEELTPVRAWPKLLCVKAVIFFVWWQGIALAVLVQLGLMPTSLGWTEQEVAKGVQNLLIVLEMLPAALAHRWAFPVSDF 321          
BLAST of mRNA_M-pyrifera_M_contig82635.19315.1 vs. uniprot
Match: A0A5A8CWL8_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CWL8_CAFRO)

HSP 1 Score: 236 bits (603), Expect = 5.970e-70
Identity = 119/244 (48.77%), Postives = 168/244 (68.85%), Query Frame = 1
Query:    1 YRQPGLQVHVIRILWMVPVYAVESFLSLFFTEYALFFETIRDSFEAFVIYSFLQLLLNYVGSEARLSDRLRHKPSSVGRHLPPCSWCLREWRLGRDFVQRCKEGVLQYVVIKLLCTAAVVALELNGKYAEGSLQP-DRGYLYVTLLSNFSQIWAIYALVMFYQATKEELAGIKPFPKFTVIKAVVFFSWWQSVAISIAAEMGYIRGGQGYSRLEVAKALQNLLICVEMLVAAVAHRSIFNVKEF 729
            ++QP LQ HV+R+L++  V+++ S+L L F E AL  ET+RD +EAF IYSF   LL   G EA L+ RLR KP+S GRH+ P + CL+ W LG   ++RCK GVLQYVV++L+ TA  + LE  G +AEG L   DRGY+YVT ++N SQ+ A+Y L++  QA  EEL  ++ +PK   +KAV+FF WWQ +A+++  ++G +    G++  EVAK +QNLLI +EML AA+AHR  F V +F
Sbjct:   78 FKQPRLQKHVVRVLFLPVVFSISSYLCLVFREAALTVETLRDGYEAFAIYSFTAFLLEAAGGEAALAARLRAKPASAGRHIFPMNHCLQPWPLGAVLLRRCKAGVLQYVVVRLVLTAVTLVLEGQGVFAEGELARFDRGYVYVTAIANMSQMTAVYCLLLLLQAAHEELTPVRAWPKLLCVKAVIFFVWWQGIALAVLVQLGLMPTSLGWTEQEVAKGVQNLLIVLEMLPAALAHRWAFPVSDF 321          
BLAST of mRNA_M-pyrifera_M_contig82635.19315.1 vs. uniprot
Match: A0A812ZXF6_9DINO (Tmem184c protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812ZXF6_9DINO)

HSP 1 Score: 222 bits (565), Expect = 3.060e-69
Identity = 112/238 (47.06%), Postives = 159/238 (66.81%), Query Frame = 1
Query:   25 HVIRILWMVPVYAVESFLSLFFTEYALFFETIRDSFEAFVIYSFLQLLLNYVGSEARLSDRLRHKPSSVGRHLPPCSWCLREWRLGRDFVQRCKEGVLQYVVIKLLCTAAVVALELNGKYAEGSL-QPDRGYLYVTLLSNFSQIWAIYALVMFYQATKEELAGIKPFPKFTVIKAVVFFSWWQSVAISIAAEMGYIRG--GQGYSRLEVAKALQNLLICVEMLVAAVAHRSIFNVKEF 729
            +V+RI+WMVP+Y++ SFLSL   + + + + +RD +E FVI++F+  L+ + GSE +L+ +LR KP S G HL P S CL  WRLGRDF+ RCK G LQY+V+K  C  A + ++    Y EG +     GYLYV+LLS  SQ +AIY LV+FY A   +LA + P PKF  +KAVVF +W QSVA++ A ++G I       YS  ++AK +QN  ICVEM +AA+ HR IF+ +++
Sbjct:    1 YVVRIMWMVPIYSISSFLSLVLKDSSPYLDVVRDFYECFVIHAFVAFLIAWCGSEDQLASKLRQKPPSKGAHLWPMSCCLPRWRLGRDFLWRCKWGTLQYIVVKTTCAIATLIMQALDVYGEGEVFSLTHGYLYVSLLSAVSQTYAIYCLVLFYHAMSGDLAPMNPVPKFLTVKAVVFATWAQSVAVAAAVQLGLIAPFITAQYSEEDIAKGIQNFAICVEMFIAALLHRRIFSFRQY 238          
BLAST of mRNA_M-pyrifera_M_contig82635.19315.1 vs. uniprot
Match: A0A0U9HJL2_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HJL2_KLENI)

HSP 1 Score: 226 bits (575), Expect = 9.610e-69
Identity = 118/250 (47.20%), Postives = 161/250 (64.40%), Query Frame = 1
Query:    1 YRQPGLQVHVIRILWMVPVYAVESFLSLFFTEYALFFETIRDSFEAFVIYSFLQLLLNYVGSEARLSDRLRHKPSSVGRHLPPCSWCLREWRLGRDFVQRCKEGVLQYVVIKLLCTAAVVALELNGKYAEGSLQPDRGYLYVTLLSNFSQIWAIYALVMFYQATKEELAGIKPFPKFTVIKAVVFFSWWQSVAISIAAEMGYIRGGQGYSRLEV---AKALQNLLICVEMLVAAVAHRSIFNVKEFMDST 741
            Y +P  Q  +IRIL MVP+YAV+S+L+L F   A++  T+R+ +EA+VIYSF + LL YVG E RL + +  KP     H+ P S  L+ WR+G+ FV+ CK GV  YVV++ + T   +  E  G Y EGS  P + Y+Y+T + N SQIWA+Y LVMFY+A  EEL  +KPF KF  +KAVVFFS+WQSVAI+I  +   IR  +  S  +V   A  +Q+ LIC+EM  AA+AH   F+  E+ D T
Sbjct:   71 YTKPLEQKKIIRILMMVPIYAVDSWLALRFKNVAIYINTLRECYEAYVIYSFFEYLLAYVGGETRLGEEIELKPQV--EHVFPFSLALKPWRMGQTFVKNCKVGVHNYVVVQPILTMTALFCEWGGYYGEGSFNPQKAYVYLTFVYNVSQIWALYCLVMFYRAAHEELQPMKPFAKFACVKAVVFFSFWQSVAIAILVKFNVIRSQETLSNYDVDDVATGIQDFLICIEMFFAAIAHGVAFSASEYADPT 318          
BLAST of mRNA_M-pyrifera_M_contig82635.19315.1 vs. uniprot
Match: B8BWD0_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWD0_THAPS)

HSP 1 Score: 221 bits (563), Expect = 2.210e-68
Identity = 113/248 (45.56%), Postives = 162/248 (65.32%), Query Frame = 1
Query:    1 YRQPGLQVHVIRILWMVPVYAVESFLSLFFTEYALFFETIRDSFEAFVIYSFLQLLLNYVGSEARLSDRLRHKPSSVGRHLPPCSWCLREWRLGRD----FVQRCKEGVLQYVVIKLLCTAAVVALELNGKYAEGSLQPDRGYLYVTLLSNFSQIWAIYALVMFYQATKEELAGIKPFPKFTVIKAVVFFSWWQSVAISIAAEMGYIR------GGQGYSRLEVAKALQNLLICVEMLVAAVAHRSIF 714
            Y QP +Q +V+RILWMVP+Y++ES+L L F   A++ ET+RD +E++V+YSFLQ L+  +G E  L   L+ K  + G H+   +W ++ W +G+     F  +CK GVLQYV++K++ +  V+ LE+ G Y EG   P  GYLY+ +++N SQ WA+Y L  FY ATK EL  I+P  KF  +KAVVFF+WWQS+ ISI  +MG I        G+ ++   VAK LQ+ LIC+EM VAA+ H  +F
Sbjct:   32 YYQPNVQCYVVRILWMVPIYSIESWLCLRFHTAAIYIETLRDVYESYVLYSFLQFLIAVLGGEEALVLMLKDKSPTRGVHMWGMNWFIKPWLMGQPWTSPFFVKCKLGVLQYVLLKVVSSIIVMFLEIYGLYKEGDFTPRGGYLYICIITNLSQCWALYCLAFFYYATKNELGPIRPVGKFLSVKAVVFFTWWQSLGISILFQMGMIPHYAAVDDGREWTAEAVAKGLQDYLICIEMFVAAIVHTFVF 279          
BLAST of mRNA_M-pyrifera_M_contig82635.19315.1 vs. uniprot
Match: A0A7S4E1A8_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4E1A8_9EUKA)

HSP 1 Score: 226 bits (575), Expect = 5.360e-68
Identity = 114/241 (47.30%), Postives = 161/241 (66.80%), Query Frame = 1
Query:   10 PGLQVHVIRILWMVPVYAVESFLSLFFTEYALFFETIRDSFEAFVIYSFLQLLLNYVGSEARL-SDRLRHKPSSVGRHLPPCSWCLREWRLGRDFVQRCKEGVLQYVVIKLLCTAAVVALELNGKYAEGSLQPDRGYLYVTLLSNFSQIWAIYALVMFYQATKEELAGIKPFPKFTVIKAVVFFSWWQSVAISIAAEMGYIRGGQGYSRLEVAKALQNLLICVEMLVAAVAHRSIFNVKEF 729
            P LQV+V+RILWMVP+YA ES+LSL F  +A+  ET R+++EA+VIY+ + L   Y+G E R+  D LR    S  +HL P ++ L +W  G +FV+ CK GVLQYV+IKL  TA    LE +G Y EG+L P+  YL++T+ +N SQIWA+Y L++FY +  +EL G  P  K   +KAVVFFS+WQ V I+I  + G I     ++  E+A+  Q+ LIC+EM+ AA+AH   F+ K+F
Sbjct:   84 PELQVYVVRILWMVPIYACESWLSLRFKTHAVLIETAREAYEAYVIYNCVYLFFGYLGGEERIVQDSLRRNDPSKEQHLFPFNYILLQWPTGAEFVENCKLGVLQYVIIKLFLTALTFYLESHGNYEEGNLDPNGWYLWITIANNVSQIWAMYCLMLFYYSYHDELEGFHPLSKLVCVKAVVFFSFWQGVVIAILVKQGMITSTYHWTTEEIARGTQDYLICIEMVFAAIAHLFSFSYKDF 324          
BLAST of mRNA_M-pyrifera_M_contig82635.19315.1 vs. uniprot
Match: A0A1E7FR84_9STRA (DUF300-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FR84_9STRA)

HSP 1 Score: 218 bits (556), Expect = 1.850e-67
Identity = 116/252 (46.03%), Postives = 160/252 (63.49%), Query Frame = 1
Query:    1 YRQPGLQVHVIRILWMVPVYAVESFLSLFFTEYALFFETIRDSFEAFVIYSFLQLLLNYVGSEARLSDRLRHKPSSVGRHLPPCSWCLREWRLGR---DFVQRCKEGVLQYVVIKLLCTAAVVALELNGKYAEGSLQPDRGYLYVTLLSNFSQIWAIYALVMFYQATKEELAGIKPFPKFTVIKAVVFFSWWQSVAISIAAEMGY------IRGGQGYSRLEVAKALQNLLICVEMLVAAVAHRSIFNVKEF 729
            Y QP  Q H++RILWMVP+Y+++S+L L F +Y+++FETIRD +EA+V+YSFLQ L+  +G E  L   L+ K  + G H+    +C++ W +      F  RCK GVLQYV++K + T AV  LE NG Y EG      GYLY+++++N SQ WAIY  + FY ATK EL  I+P  KF  +K +VFF+WWQS+ ISI A   +        G   YS  +VAKALQ+ LIC+EM V A+ H  +F   E+
Sbjct:   23 YNQPETQNHIVRILWMVPIYSIQSWLGLRFKDYSIYFETIRDWYEAYVLYSFLQYLIQVLGGEEALILMLKDKSPTRGVHIWGLQYCVKPWLMVHWTSPFFLRCKFGVLQYVLLKFILTIAVFILERNGLYKEGVFSYKGGYLYISIVTNLSQTWAIYCFLFFYFATKNELTPIRPVGKFLSVKLLVFFTWWQSLFISILAFWSFPTSHTASTGIVEYSPEDVAKALQDYLICIEMFVFAIVHIFVFPHDEY 274          
BLAST of mRNA_M-pyrifera_M_contig82635.19315.1 vs. uniprot
Match: A0A7S4DTK1_9EUKA (Hypothetical protein n=3 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DTK1_9EUKA)

HSP 1 Score: 215 bits (548), Expect = 3.920e-65
Identity = 107/238 (44.96%), Postives = 161/238 (67.65%), Query Frame = 1
Query:   16 LQVHVIRILWMVPVYAVESFLSLFFTEYALFFETIRDSFEAFVIYSFLQLLLNYVGSEARLSDRLRHKPSSVGRHLPPCSWCLREWRLGRDFVQRCKEGVLQYVVIKLLCTAAVVALELNGKYAEGSLQPDRGYLYVTLLSNFSQIWAIYALVMFYQATKEELAGIKPFPKFTVIKAVVFFSWWQSVAISIAAEMGYIRGGQGYSRLEVAKALQNLLICVEMLVAAVAHRSIFNVKEF 729
            L+ ++IRI+ MVP Y+V + + + + +  ++F+T+R+ +EAFVIYSFL+ L+N++G +  L  +LR KP   G   P C   +++W +G +F ++ K G LQYVV+K +   A  A+  NG Y  G  + DRGY+YVT+++N SQIWA+Y L +FY A K EL  I+P  KF V+KAVVFF+WWQSV +++  +M +I     +S  +V    QNLLIC+EML+AA+AHR  F V++F
Sbjct:   48 LRKYIIRIVLMVPAYSVSALMGIMYKDSCIYFDTVRECYEAFVIYSFLKFLINFLGGDEALPYKLRAKPQQ-GHLFPFCM--MKDWEMGHEFFRKIKLGTLQYVVLKPVLAWACFAMYQNGIYGAGEFRFDRGYIYVTIITNVSQIWAMYCLALFYVACKVELGPIRPVGKFMVVKAVVFFTWWQSVMLALLVKMDWIHRNGEFSTEDVVNGTQNLLICLEMLLAAMAHRYTFPVRDF 282          
BLAST of mRNA_M-pyrifera_M_contig82635.19315.1 vs. uniprot
Match: G4VIF5_SCHMA (Putative organic solute transporter n=3 Tax=Schistosoma TaxID=6181 RepID=G4VIF5_SCHMA)

HSP 1 Score: 214 bits (546), Expect = 4.400e-64
Identity = 111/249 (44.58%), Postives = 161/249 (64.66%), Query Frame = 1
Query:    1 YRQPGLQVHVIRILWMVPVYAVESFLSLFFTEYALFFETIRDSFEAFVIYSFLQLLLNYVGSE-ARLSDRLRHKPSSVGRHLPPCSWCLREWRLGRDFVQRCKEGVLQYVVIKLLCTAAVVALELNGKYAEGSLQPDRGYLYVTLLSNFSQIWAIYALVMFYQATKEELAGIKPFPKFTVIKAVVFFSWWQSVAISIAAEMGYIRGGQGYSRLEVAK---ALQNLLICVEMLVAAVAHRSIFNVKEFMD 735
            Y  P LQ H+IRILWMVP+YAV+++++L F  +A++F+T+R+ +EA+VIY+FL  LLNY+ SE   L   +  KP    +HLPP  +    W++GR F+  C+ G LQY VI+ L TA  +  E+ G Y EG       +LY+T+++N SQIWA+Y LVMFY+ T+ EL+ +KP  KF  +K VVF S+WQS+ I++ A  G IR  + +   +V     ALQN  IC+EM +AA+AH   F    ++D
Sbjct:   67 YTNPLLQRHIIRILWMVPIYAVDAWMALIFPSFAIYFDTLRECYEAYVIYNFLAFLLNYLRSEFPDLRYVIEQKPQM--KHLPPFCF-FSSWKMGRVFIDHCRHGALQYTVIRPLTTAIALICEMVGVYGEGDFSFRHAFLYLTIINNVSQIWALYCLVMFYRCTRLELSPMKPVAKFLCVKFVVFMSFWQSILIAVLAATGVIRKVEAWKLYDVQSIGIALQNFAICIEMFIAAIAHHFSFTWTPYVD 312          
BLAST of mRNA_M-pyrifera_M_contig82635.19315.1 vs. uniprot
Match: A0A6F9DUG2_9ASCI (Transmembrane protein 184C-like n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DUG2_9ASCI)

HSP 1 Score: 213 bits (543), Expect = 1.360e-63
Identity = 111/245 (45.31%), Postives = 162/245 (66.12%), Query Frame = 1
Query:    1 YRQPGLQVHVIRILWMVPVYAVESFLSLFFTEYALFFETIRDSFEAFVIYSFLQLLLNYVGSEARLSDRLRHKPSSVGRHLPPCSWCLREWRLGRDFVQRCKEGVLQYVVIKLLCTAAVVALELNGKYAEGSLQPDRGYLYVTLLSNFSQIWAIYALVMFYQATKEELAGIKPFPKFTVIKAVVFFSWWQSVAISIAAEMGYIRGGQGYS-RLEVAKALQNLLICVEMLVAAVAHRSIFNVKEFM 732
            + QP LQ  ++RILWMVPVYA++S+ ++ F + A++F+T+R+ +EA+VIYSF+  LLNY+  E  L+  L  KP    +H+ P   C   W +G  F+QRCK+GVLQY +I+ L T   +  +L   Y EG   P   +LY+ +++N SQIWA+Y L +FY ATKEEL  IKP  KF  +K VVF S+WQ++AI+I  E+  +    G++ + E+A  LQ+LLIC EM +A+VAH   F+ K F+
Sbjct:   78 FTQPELQKPIMRILWMVPVYAIDSWFAVKFPDLAIYFDTVRECYEAYVIYSFMSYLLNYLTREYELAGTLGSKPQR--KHIFPFC-CFPSWPMGGIFIQRCKQGVLQYTLIRPLTTVIALICQLQNVYKEGDFNPRYAWLYIMIINNVSQIWAMYCLCLFYLATKEELKPIKPVGKFVCVKLVVFASFWQALAIAIVVEVIDLNKKWGWNTKEELANGLQDLLICFEMFIASVAHHYTFSYKPFI 319          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82635.19315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8EIS0_CAFRO7.130e-7248.77Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8CWL8_CAFRO5.970e-7048.77Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A812ZXF6_9DINO3.060e-6947.06Tmem184c protein (Fragment) n=1 Tax=Symbiodinium s... [more]
A0A0U9HJL2_KLENI9.610e-6947.20Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
B8BWD0_THAPS2.210e-6845.56Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S4E1A8_9EUKA5.360e-6847.30Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
A0A1E7FR84_9STRA1.850e-6746.03DUF300-domain-containing protein (Fragment) n=1 Ta... [more]
A0A7S4DTK1_9EUKA3.920e-6544.96Hypothetical protein n=3 Tax=Lotharella globosa Ta... [more]
G4VIF5_SCHMA4.400e-6444.58Putative organic solute transporter n=3 Tax=Schist... [more]
A0A6F9DUG2_9ASCI1.360e-6345.31Transmembrane protein 184C-like n=1 Tax=Phallusia ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82635contigM-pyrifera_M_contig82635:2..877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score223.0
Seed ortholog evalue1.5e-55
Seed eggNOG ortholog2850.Phatr16105
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Organic solute transporter Ostalpha
EggNOG OGs2XB9K@2836,KOG2641@1,KOG2641@2759
COG Functional cat.T
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size741
Cds size741
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816733.0900478-CDS-M-pyrifera_M_contig82635:1..5481622816733.0900478-CDS-M-pyrifera_M_contig82635:1..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82635 2..548 +
1692278146.2888691-CDS-M-pyrifera_M_contig82635:1..5481692278146.2888691-CDS-M-pyrifera_M_contig82635:1..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82635 2..548 +
1622816733.1086032-CDS-M-pyrifera_M_contig82635:683..8771622816733.1086032-CDS-M-pyrifera_M_contig82635:683..877Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82635 684..877 +
1692278146.2995853-CDS-M-pyrifera_M_contig82635:683..8771692278146.2995853-CDS-M-pyrifera_M_contig82635:683..877Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82635 684..877 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82635.19315.1prot_M-pyrifera_M_contig82635.19315.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82635 2..877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82635.19315.1

>prot_M-pyrifera_M_contig82635.19315.1 ID=prot_M-pyrifera_M_contig82635.19315.1|Name=mRNA_M-pyrifera_M_contig82635.19315.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=247bp
YRQPGLQVHVIRILWMVPVYAVESFLSLFFTEYALFFETIRDSFEAFVIY
SFLQLLLNYVGSEARLSDRLRHKPSSVGRHLPPCSWCLREWRLGRDFVQR
CKEGVLQYVVIKLLCTAAVVALELNGKYAEGSLQPDRGYLYVTLLSNFSQ
IWAIYALVMFYQATKEELAGIKPFPKFTVIKAVVFFSWWQSVAISIAAEM
GYIRGGQGYSRLEVAKALQNLLICVEMLVAAVAHRSIFNVKEFMDST
back to top

mRNA from alignment at M-pyrifera_M_contig82635:2..877+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82635.19315.1 ID=mRNA_M-pyrifera_M_contig82635.19315.1|Name=mRNA_M-pyrifera_M_contig82635.19315.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig82635:2..877+ (Macrocystis pyrifera P11B4 male)
TATCGGCAGCCCGGGCTGCAGGTGCACGTGATCCGCATTCTGTGGATGGT GCCCGTGTACGCGGTGGAGAGCTTTTTGAGCCTGTTTTTCACCGAATACG CGCTGTTTTTCGAAACCATCCGGGACTCGTTCGAGGCCTTTGTGATCTAC TCCTTCCTGCAGCTGCTGCTGAACTACGTCGGTTCCGAAGCAAGATTAAG CGATCGATTACGTCACAAACCATCCTCTGTGGGACGCCACCTCCCACCTT GCTCCTGGTGTCTGAGGGAATGGAGACTCGGAAGAGACTTTGTGCAACGC TGCAAAGAAGGCGTCCTGCAGTACGTGGTCATCAAGCTCCTATGCACAGC CGCCGTCGTTGCCCTAGAGCTCAACGGCAAATACGCAGAGGGCTCCCTCC AACCAGACAGAGGGTACCTCTACGTCACCCTCCTCTCCAACTTTTCCCAA ATCTGGGCCATCTACGCTCTCGTCATGTTCTACCAAGCCACGAAAGAAGA ACTCGCGGGAATCAAACCCTTCCCAAAGTTCACTGTCATCAAAGCAGGTA AGGAAAAAGGAGAGGAGGAGAGGAACAAGGAGGGGAGTTTTTTTTCGTTT TCTTCTTCCTCTTCTTCAACCACCCCCCTTTCCTACCTACCCCATGTCTT CTTCCAACTTCTTTCCTTTTCTTTTCTTGCAGTGGTATTTTTCAGTTGGT GGCAGAGTGTTGCGATTAGCATTGCTGCGGAGATGGGGTATATTCGAGGT GGACAAGGGTATAGTCGGCTGGAGGTCGCCAAGGCGTTGCAGAATTTGTT GATTTGTGTGGAGATGCTGGTGGCGGCGGTGGCGCATCGGAGCATTTTCA ATGTGAAGGAGTTTATGGACTCAACG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig82635:2..877+

>mRNA_M-pyrifera_M_contig82635.19315.1 ID=mRNA_M-pyrifera_M_contig82635.19315.1|Name=mRNA_M-pyrifera_M_contig82635.19315.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1482bp|location=Sequence derived from alignment at M-pyrifera_M_contig82635:2..877+ (Macrocystis pyrifera P11B4 male)
TATCGGCAGCCCGGGCTGCAGGTGCACGTGATCCGCATTCTGTGGATGGT
GCCCGTGTACGCGGTGGAGAGCTTTTTGAGCCTGTTTTTCACCGAATACG
CGCTGTTTTTCGAAACCATCCGGGACTCGTTCGAGGCCTTTGTGATCTAC
TCCTTCCTGCAGCTGCTGCTGAACTACGTCGGTTCCGAAGCAAGATTAAG
CGATCGATTACGTCACAAACCATCCTCTGTGGGACGCCACCTCCCACCTT
GCTCCTGGTGTCTGAGGGAATGGAGACTCGGAAGAGACTTTGTGCAACGC
TGCAAAGAAGGCGTCCTGCAGTACGTGGTCATCAAGCTCCTATGCACAGC
CGCCGTCGTTGCCCTAGAGCTCAACGGCAAATACGCAGAGGGCTCCCTCC
AACCAGACAGAGGGTACCTCTACGTCACCCTCCTCTCCAACTTTTCCCAA
ATCTGGGCCATCTACGCTCTCGTCATGTTCTACCAAGCCACGAAAGAAGA
ACTCGCGGGAATCAAACCCTTCCCAAAGTTCACTGTCATCAAAGCAGTAT
CGGCAGCCCGGGCTGCAGGTGCACGTGATCCGCATTCTGTGGATGGTGCC
CGTGTACGCGGTGGAGAGCTTTTTGAGCCTGTTTTTCACCGAATACGCGC
TGTTTTTCGAAACCATCCGGGACTCGTTCGAGGCCTTTGTGATCTACTCC
TTCCTGCAGCTGCTGCTGAACTACGTCGGTTCCGAAGCAAGATTAAGCGA
TCGATTACGTCACAAACCATCCTCTGTGGGACGCCACCTCCCACCTTGCT
CCTGGTGTCTGAGGGAATGGAGACTCGGAAGAGACTTTGTGCAACGCTGC
AAAGAAGGCGTCCTGCAGTACGTGGTCATCAAGCTCCTATGCACAGCCGC
CGTCGTTGCCCTAGAGCTCAACGGCAAATACGCAGAGGGCTCCCTCCAAC
CAGACAGAGGGTACCTCTACGTCACCCTCCTCTCCAACTTTTCCCAAATC
TGGGCCATCTACGCTCTCGTCATGTTCTACCAAGCCACGAAAGAAGAACT
CGCGGGAATCAAACCCTTCCCAAAGTTCACTGTCATCAAAGCAGTGGTAT
TTTTCAGTTGGTGGCAGAGTGTTGCGATTAGCATTGCTGCGGAGATGGGG
TATATTCGAGGTGGACAAGGGTATAGTCGGCTGGAGGTCGCCAAGGCGTT
GCAGAATTTGTTGATTTGTGTGGAGATGCTGGTGGCGGCGGTGGCGCATC
GGAGCATTTTCAATGTGAAGGAGTTTATGGACTCAACGTGGTATTTTTCA
GTTGGTGGCAGAGTGTTGCGATTAGCATTGCTGCGGAGATGGGGTATATT
CGAGGTGGACAAGGGTATAGTCGGCTGGAGGTCGCCAAGGCGTTGCAGAA
TTTGTTGATTTGTGTGGAGATGCTGGTGGCGGCGGTGGCGCATCGGAGCA
TTTTCAATGTGAAGGAGTTTATGGACTCAACG
back to top