mRNA_M-pyrifera_M_contig82579.19302.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82579.19302.1
Unique NamemRNA_M-pyrifera_M_contig82579.19302.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig82579.19302.1 vs. uniprot
Match: A0A2D5AS47_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5AS47_9BACT)

HSP 1 Score: 165 bits (418), Expect = 4.980e-45
Identity = 103/305 (33.77%), Postives = 150/305 (49.18%), Query Frame = 1 
Query:    1 SLLLVGLLQLLDTTAELWRDVEVDRERTEIGTALVMRLEHDLSTLEAGIEGDLWADWATIDADGDELAGLSVPRLRFVRRASAREVARLAAELDLAAADEADXXXXXXXXTSLLTEPAGDLSDPSLEGWKRVDRGLCEVVWALVPADEQPFRGRLI----RAVRLLDDDSKMSLFDERLFTASGRPVPGLFEPLSDDVLWMDMAFAGQVTQTRADTRWDIGPRPADGARAWDGWDRQRLSLERSELNVGPEALPQPDETPNLPRRVRVRFEVETPQDRLRRPTLLNGIEHDATVFDVSDGSRMPD 903
            S+L + L++LLDT+  +W   E  RE  E+G A++   ++D+  +EAG  GDL  DW + D D D + G   PR+RFV++ASA ++ARL                               + DP         R L EV WAL+P  E     RL+    R  R L D   +S FDE  F   GRPVPG    ++  +LW ++ +A Q T+ R    W+ G     GA +WD W+R R  +E  E N     +P+  + P++PRR+R+  E+E P +  RR      I  +   F V DGSR+P+
Sbjct:   27 SILFIALVRLLDTSLRIWGRTEAGRELFEVGGAVMDLFDNDILGIEAGPRGDLLGDWTSFDLDRDGIDGTFWPRVRFVKQASASQLARL---------------------------ENVSVGDPHR-------RDLVEVCWALLPRREADVEERLVGLLWRGERKLSDKESLSFFDENFFGTGGRPVPGALNVVTGGILWFEVEYATQTTRVR--DGWEHGFDLTSGASSWDAWNRGRPDVETCEWNEPHPGMPKVKDMPSMPRRIRLVLELERPVELKRRTRTSGLITVEENSFVVGDGSRLPE 295
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BLAST of mRNA_M-pyrifera_M_contig82579.19302.1 vs. uniprot
Match: A0A521KZK2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521KZK2_9BACT)

HSP 1 Score: 140 bits (353), Expect = 1.740e-35
Identity = 104/309 (33.66%), Postives = 145/309 (46.93%), Query Frame = 1 
Query:    1 SLLLVGLLQLLDTTAELWRDVEVDRERTEIGTALVMRLEHDLSTLEAGIEGDLWADWATIDADGDELAGLSVPRLRFVRRASAREVARLAAELDLAAADEADXXXXXXXXTSLLTEPAGDLSDPSLEGWKRVDRGLCEVVWALVPADEQPFR----GRLIRAVRLLDDDSKMSLFDERLFTASGRPVPGLFEPLSDDVLWMDMAFAGQVTQTRADTRWDIGPRPADGARAWDGWDRQRLSLER---SELNVGPEALPQP--DETPNLPRRVRVRFEVETPQDRLRRPTLLNGIEHDATVFDVSDGSRMP 900
            SLL++ L++L+DT+  LWR  E  R + E+ +A+   L  DL+ +E+G  GDL  +WA  D DGD +A L   RLR VR ASA E+ RL                                SD  + G     +GL EV WAL+PA     R    G L R VRL    + +SL D R F++SGRP  G+ E ++  VLW +   A   T   +   W+ G        +WD     R   ER   +E      AL  P   + P LPRR+R+ FEVET + ++RR +    +        V D S++P
Sbjct:   23 SLLVLALVKLIDTSMTLWRKTEERRSQNEMSSAVTELLASDLAAVESGPRGDLLVEWAPFDVDGDGIATLPCLRLRLVRAASAGEIERLQVA-----------------------------SDAPVLG-----QGLLEVCWALLPASTAGARLEWDGVLWRGVRLYGPGAGLSLLDPRFFSSSGRPASGVLEEVTGGVLWFEALCASAGTDLSSG--WESGAAREQSFASWDARGAARPDAERFVANEPGAAMSALVSPLGVQRPQLPRRMRLVFEVETARGKMRRVSTTADVGIKEGALRVDDASKLP 295
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BLAST of mRNA_M-pyrifera_M_contig82579.19302.1 vs. uniprot
Match: A0A518CXF1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Pla163 TaxID=2528008 RepID=A0A518CXF1_9BACT)

HSP 1 Score: 128 bits (322), Expect = 7.500e-31
Identity = 100/315 (31.75%), Postives = 140/315 (44.44%), Query Frame = 1 
Query:    1 SLLLVGLLQLLDTTAELWRDVEVDRERTEIGTALVMRLEHDLSTLEAGIEGDLWADWATIDADGDELAGLSVPRLRFVRRASAREVARLAAELDLAAADEADXXXXXXXXTSLLTEPAGDLSDPSLEGWKRVDRGLCEVVWALVPADEQ---------------PFRGRLIRAVRLLDDDSKMSLFDERLFTASGRPVPGLFEPLSDDVLWMDMAFAGQVTQTRADTRWDIGPRPADGARAWDGWDRQRLSLERSELNVGPEALPQPDETPNLPRRVRVRFEVETPQDRLRRPTLLNGIEHDATVFDVSDGSRMP 900
            +LL + ++QLLD+T  +W   E  R      + L  ++  +L  L  G  GDL  DW   D DGD +A   +PRLRFVRRA+A ++ RL                          +   D +DP+    +  +  L EVV+ ++P++ +               P    L R  RLLDD S+ S FD+  F  +G P  G  EP+ D +LW+++  AG+ T  R D  W +G  P D ARAWD     RL       N            P  PRRVR+  EVE P D  RR  L   +  +A    V D   +P
Sbjct:   28 ALLSLMVVQLLDSTMRVWGRAEAQRYAIGTHSTLSSQILDELDQLAGGERGDLLIDWEIFDTDGDLIATRPLPRLRFVRRATAADMNRLG-------------------------QREIDPNDPTTARLRGGELPLLEVVYCVLPSEIEGLLETGELAEGMPGAPGDVVLWRGERLLDDASRPSAFDDDFFL-NGFPPTGSAEPVHDGILWVELLCAGRGT--RLDRGWRVGTTPQDAARAWDAHGGGRLDTALHPFNAPYMGQGTYRGEPLFPRRVRLVLEVEGPSDAKRRAALAEPLTPEAIEMVVRDPQLLP 314
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82579.19302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2D5AS47_9BACT4.980e-4533.77Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A521KZK2_9BACT1.740e-3533.66Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A518CXF1_9BACT7.500e-3131.75Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82579contigM-pyrifera_M_contig82579:3..905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size903
Cds size903
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816732.543304-CDS-M-pyrifera_M_contig82579:2..9051622816732.543304-CDS-M-pyrifera_M_contig82579:2..905Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82579 3..905 +
1692278146.0237553-CDS-M-pyrifera_M_contig82579:2..9051692278146.0237553-CDS-M-pyrifera_M_contig82579:2..905Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82579 3..905 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82579.19302.1prot_M-pyrifera_M_contig82579.19302.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82579 3..905 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82579.19302.1

>prot_M-pyrifera_M_contig82579.19302.1 ID=prot_M-pyrifera_M_contig82579.19302.1|Name=mRNA_M-pyrifera_M_contig82579.19302.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=301bp
SLLLVGLLQLLDTTAELWRDVEVDRERTEIGTALVMRLEHDLSTLEAGIE
GDLWADWATIDADGDELAGLSVPRLRFVRRASAREVARLAAELDLAAADE
ADEDAEEDAETSLLTEPAGDLSDPSLEGWKRVDRGLCEVVWALVPADEQP
FRGRLIRAVRLLDDDSKMSLFDERLFTASGRPVPGLFEPLSDDVLWMDMA
FAGQVTQTRADTRWDIGPRPADGARAWDGWDRQRLSLERSELNVGPEALP
QPDETPNLPRRVRVRFEVETPQDRLRRPTLLNGIEHDATVFDVSDGSRMP
D
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mRNA from alignment at M-pyrifera_M_contig82579:3..905+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82579.19302.1 ID=mRNA_M-pyrifera_M_contig82579.19302.1|Name=mRNA_M-pyrifera_M_contig82579.19302.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=903bp|location=Sequence derived from alignment at M-pyrifera_M_contig82579:3..905+ (Macrocystis pyrifera P11B4 male)
TCGCTGCTGCTCGTCGGGCTGTTGCAGCTGCTCGACACGACGGCGGAGCT
GTGGCGCGACGTCGAGGTCGATCGCGAGCGCACCGAGATCGGCACGGCGC
TGGTGATGCGCCTCGAGCACGACCTGTCGACGCTCGAGGCGGGCATCGAG
GGCGACCTGTGGGCCGACTGGGCGACGATCGACGCGGACGGCGATGAGCT
GGCGGGGCTGAGCGTGCCGCGGCTGCGCTTCGTGCGGCGGGCCTCGGCGC
GTGAGGTCGCGCGGCTGGCCGCCGAGCTGGACCTCGCCGCGGCCGATGAA
GCTGACGAGGACGCTGAGGAGGATGCGGAGACGTCGCTCTTGACCGAGCC
GGCCGGCGACCTGTCGGACCCGAGCCTGGAGGGCTGGAAGCGGGTCGACC
GCGGCCTGTGCGAGGTCGTGTGGGCGCTGGTCCCGGCCGACGAGCAGCCG
TTCCGCGGGCGCCTGATCCGCGCCGTGCGCCTGCTCGACGACGACTCCAA
GATGTCGCTGTTCGACGAGCGCCTGTTCACCGCCAGCGGCCGGCCCGTGC
CGGGGCTGTTCGAGCCGCTGAGCGACGACGTACTGTGGATGGACATGGCC
TTCGCCGGCCAGGTCACCCAGACCCGCGCCGACACGCGGTGGGACATCGG
TCCGCGGCCGGCGGACGGCGCGCGGGCCTGGGACGGTTGGGACCGCCAGC
GGCTCTCGCTCGAGCGCAGCGAGCTCAACGTCGGTCCCGAGGCCCTGCCC
CAGCCCGACGAGACGCCCAACCTGCCGCGGCGGGTACGGGTGCGCTTCGA
GGTGGAGACGCCCCAGGACCGCTTGCGCCGGCCGACGCTCTTGAACGGCA
TCGAGCACGACGCGACGGTCTTCGACGTGTCCGATGGCAGCCGGATGCCG
GAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82579:3..905+

>mRNA_M-pyrifera_M_contig82579.19302.1 ID=mRNA_M-pyrifera_M_contig82579.19302.1|Name=mRNA_M-pyrifera_M_contig82579.19302.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1806bp|location=Sequence derived from alignment at M-pyrifera_M_contig82579:3..905+ (Macrocystis pyrifera P11B4 male)
TCGCTGCTGCTCGTCGGGCTGTTGCAGCTGCTCGACACGACGGCGGAGCT
GTGGCGCGACGTCGAGGTCGATCGCGAGCGCACCGAGATCGGCACGGCGC
TGGTGATGCGCCTCGAGCACGACCTGTCGACGCTCGAGGCGGGCATCGAG
GGCGACCTGTGGGCCGACTGGGCGACGATCGACGCGGACGGCGATGAGCT
GGCGGGGCTGAGCGTGCCGCGGCTGCGCTTCGTGCGGCGGGCCTCGGCGC
GTGAGGTCGCGCGGCTGGCCGCCGAGCTGGACCTCGCCGCGGCCGATGAA
GCTGACGAGGACGCTGAGGAGGATGCGGAGACGTCGCTCTTGACCGAGCC
GGCCGGCGACCTGTCGGACCCGAGCCTGGAGGGCTGGAAGCGGGTCGACC
GCGGCCTGTGCGAGGTCGTGTGGGCGCTGGTCCCGGCCGACGAGCAGCCG
TTCCGCGGGCGCCTGATCCGCGCCGTGCGCCTGCTCGACGACGACTCCAA
GATGTCGCTGTTCGACGAGCGCCTGTTCACCGCCAGCGGCCGGCCCGTGC
CGGGGCTGTTCGAGCCGCTGAGCGACGACGTACTGTGGATGGACATGGCC
TTCGCCGGCCAGGTCACCCAGACCCGCGCCGACACGCGGTGGGACATCGG
TCCGCGGCCGGCGGACGGCGCGCGGGCCTGGGACGGTTGGGACCGCCAGC
GGCTCTCGCTCGAGCGCAGCGAGCTCAACGTCGGTCCCGAGGCCCTGCCC
CAGCCCGACGAGACGCCCAACCTGCCGCGGCGGGTACGGGTGCGCTTCGA
GGTGGAGACGCCCCAGGACCGCTTGCGCCGGCCGACGCTCTTGAACGGCA
TCGAGCACGACGCGACGGTCTTCGACGTGTCCGATGGCAGCCGGATGCCG
GACTCGCTGCTGCTCGTCGGGCTGTTGCAGCTGCTCGACACGACGGCGGA
GCTGTGGCGCGACGTCGAGGTCGATCGCGAGCGCACCGAGATCGGCACGG
CGCTGGTGATGCGCCTCGAGCACGACCTGTCGACGCTCGAGGCGGGCATC
GAGGGCGACCTGTGGGCCGACTGGGCGACGATCGACGCGGACGGCGATGA
GCTGGCGGGGCTGAGCGTGCCGCGGCTGCGCTTCGTGCGGCGGGCCTCGG
CGCGTGAGGTCGCGCGGCTGGCCGCCGAGCTGGACCTCGCCGCGGCCGAT
GAAGCTGACGAGGACGCTGAGGAGGATGCGGAGACGTCGCTCTTGACCGA
GCCGGCCGGCGACCTGTCGGACCCGAGCCTGGAGGGCTGGAAGCGGGTCG
ACCGCGGCCTGTGCGAGGTCGTGTGGGCGCTGGTCCCGGCCGACGAGCAG
CCGTTCCGCGGGCGCCTGATCCGCGCCGTGCGCCTGCTCGACGACGACTC
CAAGATGTCGCTGTTCGACGAGCGCCTGTTCACCGCCAGCGGCCGGCCCG
TGCCGGGGCTGTTCGAGCCGCTGAGCGACGACGTACTGTGGATGGACATG
GCCTTCGCCGGCCAGGTCACCCAGACCCGCGCCGACACGCGGTGGGACAT
CGGTCCGCGGCCGGCGGACGGCGCGCGGGCCTGGGACGGTTGGGACCGCC
AGCGGCTCTCGCTCGAGCGCAGCGAGCTCAACGTCGGTCCCGAGGCCCTG
CCCCAGCCCGACGAGACGCCCAACCTGCCGCGGCGGGTACGGGTGCGCTT
CGAGGTGGAGACGCCCCAGGACCGCTTGCGCCGGCCGACGCTCTTGAACG
GCATCGAGCACGACGCGACGGTCTTCGACGTGTCCGATGGCAGCCGGATG
CCGGAC
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