mRNA_M-pyrifera_M_contig100864.193.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100864.193.1
Unique NamemRNA_M-pyrifera_M_contig100864.193.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100864.193.1 vs. uniprot
Match: UPI001EE50693 (LOW QUALITY PROTEIN: uncharacterized protein LOC124262067 n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE50693)

HSP 1 Score: 160 bits (406), Expect = 3.310e-43
Identity = 75/139 (53.96%), Postives = 99/139 (71.22%), Query Frame = 1
Query:   19 IKKVHVVSMNHLDVGYNGIYPTTGFIVNVLNRYFDVYFPRAMAMSAAMRASGTSDRFIYTTHPFLVSLYVDCPPNFVLNGMSLHCPTSTQVDAMEGALRRGDIVMHAGPFNVEIENVGDPGLWGDAVALSRDLAQRYGI 435
            +K++H++ MNHLDVGYNGI+PT GF+ NV+NRYF VYFPRA+ +S  +R+ G  +R +YTTHP+LVSLY+DCPPN  L+G+ L CP    V     A RRGDI  HAGP N++ E + DP L    + L +DL +R GI
Sbjct:   53 VKRLHLIFMNHLDVGYNGIFPTLGFVNNVINRYFTVYFPRAVNISQQLRSDGYMERLVYTTHPWLVSLYLDCPPNLNLSGIVLQCPGKEAVSEFVAAARRGDISWHAGPMNMQFEML-DPALVEFGLQLGQDLDKRLGI 190          
BLAST of mRNA_M-pyrifera_M_contig100864.193.1 vs. uniprot
Match: UPI0003F08BDB (uncharacterized protein LOC102807935 n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F08BDB)

HSP 1 Score: 155 bits (393), Expect = 5.510e-42
Identity = 69/145 (47.59%), Postives = 103/145 (71.03%), Query Frame = 1
Query:    1 WIAQEQIKKVHVVSMNHLDVGYNGIYPTTGFIVNVLNRYFDVYFPRAMAMSAAMRASGTSDRFIYTTHPFLVSLYVDCPPNFVLNGMSLHCPTSTQVDAMEGALRRGDIVMHAGPFNVEIENVGDPGLWGDAVALSRDLAQRYGI 435
            W+  + I  VH+V MNHLDVGYNG+    GF+ NVLN+YF++Y+PRA+ ++  +R  G ++ FIYTTHP+LVSLY+DCPP+  L G+ L CP+    +  + A++RGDI  HAGP N++ +N+ D  L+  ++ +S DL +R+GI
Sbjct:   26 WVKVQDINHVHIVYMNHLDVGYNGLTTEKGFVNNVLNQYFNIYYPRAIRIANTLRLLGGNETFIYTTHPWLVSLYLDCPPSLELAGIKLICPSKEDKNRFKKAVKRGDITWHAGPMNLQTDNI-DKSLFEYSLTISEDLDKRFGI 169          
BLAST of mRNA_M-pyrifera_M_contig100864.193.1 vs. uniprot
Match: UPI001B88D188 (uncharacterized protein LOC121381225 n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88D188)

HSP 1 Score: 151 bits (382), Expect = 6.670e-40
Identity = 71/141 (50.35%), Postives = 94/141 (66.67%), Query Frame = 1
Query:   13 EQIKKVHVVSMNHLDVGYNGIYPTTGFIVNVLNRYFDVYFPRAMAMSAAMRASGTSDRFIYTTHPFLVSLYVDCPPNFVLNGMSLHCPTSTQVDAMEGALRRGDIVMHAGPFNVEIENVGDPGLWGDAVALSRDLAQRYGI 435
            E I KVH+V MNHLDVG+NGI P  GFI N+LN+YF VYFPRA+  +  + A G  ++ +YTTHP+LVSLY+DCPPN  L+G+ L CP  T VD  + A+  G I  HAGP N+  E + D  +    + +S DL + +GI
Sbjct:   30 ESILKVHIVFMNHLDVGFNGIAPELGFINNILNKYFQVYFPRAIQQAMTLEALGFKEKLVYTTHPWLVSLYLDCPPNLNLSGIVLQCPNKTSVDIFKKAVDLGIITWHAGPMNMMFETLMDVSMVEFGLQMSEDLDKMFGI 170          
BLAST of mRNA_M-pyrifera_M_contig100864.193.1 vs. uniprot
Match: UPI00201F0608 (uncharacterized protein LOC124142894 n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F0608)

HSP 1 Score: 151 bits (381), Expect = 9.450e-40
Identity = 71/139 (51.08%), Postives = 97/139 (69.78%), Query Frame = 1
Query:   19 IKKVHVVSMNHLDVGYNGIYPTTGFIVNVLNRYFDVYFPRAMAMSAAMRASGTSDRFIYTTHPFLVSLYVDCPPNFVLNGMSLHCPTSTQVDAMEGALRRGDIVMHAGPFNVEIENVGDPGLWGDAVALSRDLAQRYGI 435
            +K++H++ MNHLDVGYNGI+PT GF+ NV+NRYF VYFPRA+ +S  +R+ G  +R +YTTHP+LVSLY+DCPPN  L+G+ L CP    V     A + GDI  HAGP N++ E + D  +    + L +DL +R GI
Sbjct:   39 VKRLHLLFMNHLDVGYNGIFPTLGFVNNVINRYFTVYFPRAVNVSRQLRSEGYLERLVYTTHPWLVSLYLDCPPNLNLSGIVLQCPGEDAVSDFVAAAQLGDISWHAGPMNMQFEML-DTAMVEFGLQLGQDLDKRLGI 176          
BLAST of mRNA_M-pyrifera_M_contig100864.193.1 vs. uniprot
Match: A0A2T7NML9_POMCA (Uncharacterized protein n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NML9_POMCA)

HSP 1 Score: 151 bits (381), Expect = 9.480e-40
Identity = 67/140 (47.86%), Postives = 100/140 (71.43%), Query Frame = 1
Query:   16 QIKKVHVVSMNHLDVGYNGIYPTTGFIVNVLNRYFDVYFPRAMAMSAAMRASGTSDRFIYTTHPFLVSLYVDCPPNFVLNGMSLHCPTSTQVDAMEGALRRGDIVMHAGPFNVEIENVGDPGLWGDAVALSRDLAQRYGI 435
            +IKKVH+V MNHLDVGY+GIYP  GF +NV+N+YF  Y+PRA A++  +R  G  +R +YTTHP+L+ LY++CP   + + +SL CP+ T+VD +  A+  GD+V HAGP N++ EN  DP +   ++ +S +L + +GI
Sbjct:   32 KIKKVHLVFMNHLDVGYDGIYPEVGFALNVINKYFTEYYPRAAAIAEELRLLGFRERLVYTTHPWLLHLYLNCPSMMLASNVSLKCPSRTEVDTVRRAVAMGDVVWHAGPMNMQFENFMDPVMLDLSLNISTNLDREFGI 171          
BLAST of mRNA_M-pyrifera_M_contig100864.193.1 vs. uniprot
Match: A0A8B6DJW8_MYTGA (Uncharacterized protein n=3 Tax=Mytilus TaxID=6548 RepID=A0A8B6DJW8_MYTGA)

HSP 1 Score: 149 bits (377), Expect = 3.150e-39
Identity = 71/142 (50.00%), Postives = 101/142 (71.13%), Query Frame = 1
Query:   13 EQIKKVHVVSMNHLDVGYNGIYPTT-GFIVNVLNRYFDVYFPRAMAMSAAMRASGTSDRFIYTTHPFLVSLYVDCPPNFVLNGMSLHCPTSTQVDAMEGALRRGDIVMHAGPFNVEIENVGDPGLWGDAVALSRDLAQRYGI 435
            E ++KVH++ MNHLDVGY+G+ P   GFI NVLN+YF  YFPRA+ +S  +R  G  ++FIYTTHP+LVSLY++CPPN VL+G+ L CP +T++ +   A+++GDI  HAGP N++ E + D  L    + LS+DL  +  I
Sbjct:   25 EDVEKVHIIFMNHLDVGYDGLLPEELGFINNVLNKYFVEYFPRAIRLSEQLRMLGYYEKFIYTTHPWLVSLYLNCPPNLVLSGIKLKCPNTTELSSFVNAVKQGDITWHAGPMNMQFEVI-DVELARFGIKLSKDLDDKMNI 165          
BLAST of mRNA_M-pyrifera_M_contig100864.193.1 vs. uniprot
Match: K1QIM2_CRAGI (Uncharacterized protein n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1QIM2_CRAGI)

HSP 1 Score: 147 bits (372), Expect = 1.490e-38
Identity = 69/139 (49.64%), Postives = 100/139 (71.94%), Query Frame = 1
Query:   13 EQIKKVHVVSMNHLDVGYNGIYPTTGFIVNVLNRYFDVYFPRAMAMSAAMRASGTSDRFIYTTHPFLVSLYVDCPPNFVLNGMSLHCPTSTQVDAMEGALRRGDIVMHAGPFNVEIENVGDPGLWGDAVALSRDLAQRY 429
            + +K VHV+ MNHLDVGY+GI P  GFI N+LNRYF+ YFPRA+ +S  +RA    + F+YTTHP+LVSLY+DCP +F L+ + L CP  T+ +  E A+RRGDI  HAGP N++ EN+ +  L+  ++ +S +L +++
Sbjct:   15 DNVKYVHVIFMNHLDVGYDGISPEIGFINNILNRYFNEYFPRAVNLSEQLRAGEYVENFVYTTHPWLVSLYLDCPEHFRLSDIPLLCPNQTEKEYFEAAIRRGDITWHAGPMNMQPENINEI-LFQMSLNMSFELDKKF 152          
BLAST of mRNA_M-pyrifera_M_contig100864.193.1 vs. uniprot
Match: UPI00201F767B (uncharacterized protein LOC124124794 isoform X1 n=7 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F767B)

HSP 1 Score: 147 bits (372), Expect = 1.640e-38
Identity = 72/143 (50.35%), Postives = 99/143 (69.23%), Query Frame = 1
Query:    7 AQEQIKKVHVVSMNHLDVGYNGIYPTTGFIVNVLNRYFDVYFPRAMAMSAAMRASGTSDRFIYTTHPFLVSLYVDCPPNFVLNGMSLHCPTSTQVDAMEGALRRGDIVMHAGPFNVEIENVGDPGLWGDAVALSRDLAQRYGI 435
            A   ++ VH++ MNHLDVGYNGI PT GFI NVLN YF +YFPRA+ +S  +R     + FIYTTHP+LVSLY+DCP N +LN ++L CP++  V A   A+ RGDI  HAGP N++ EN+ +  L+  ++ +S D+   +GI
Sbjct:   36 AASSVETVHIIFMNHLDVGYNGISPTVGFINNVLNIYFQLYFPRAVQLSQQLRHDQYEETFIYTTHPWLVSLYLDCP-NLILNNITLACPSTKDVAAFRDAVMRGDITWHAGPMNMQPENM-NQALFELSLNISLDVDAEFGI 176          
BLAST of mRNA_M-pyrifera_M_contig100864.193.1 vs. uniprot
Match: A0A8B8DLY6_CRAVI (uncharacterized protein LOC111127633 isoform X1 n=4 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8DLY6_CRAVI)

HSP 1 Score: 147 bits (371), Expect = 2.230e-38
Identity = 70/139 (50.36%), Postives = 99/139 (71.22%), Query Frame = 1
Query:   19 IKKVHVVSMNHLDVGYNGIYPTTGFIVNVLNRYFDVYFPRAMAMSAAMRASGTSDRFIYTTHPFLVSLYVDCPPNFVLNGMSLHCPTSTQVDAMEGALRRGDIVMHAGPFNVEIENVGDPGLWGDAVALSRDLAQRYGI 435
            +K VHV+ MNHLDVGY+GI+   GFI N+LNRYF  YFPRA+ +S  +RA    + FIYTTHP+LVSLY+DCP +F LN +SL CP  T+++  + A+ RGDI  HAGP N++ EN+ +  L+  ++ +S +L + + I
Sbjct:   38 VKYVHVIFMNHLDVGYDGIHSEIGFINNILNRYFVEYFPRAVNLSQQLRAGEYVENFIYTTHPWLVSLYLDCPTDFRLNNISLMCPNETEIEYFQAAISRGDITWHAGPMNMQPENMNEI-LFQMSLNMSFELDKNFNI 175          
BLAST of mRNA_M-pyrifera_M_contig100864.193.1 vs. uniprot
Match: UPI00201EFFAA (uncharacterized protein LOC124113675 isoform X1 n=4 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201EFFAA)

HSP 1 Score: 146 bits (369), Expect = 4.210e-38
Identity = 67/141 (47.52%), Postives = 96/141 (68.09%), Query Frame = 1
Query:   13 EQIKKVHVVSMNHLDVGYNGIYPTTGFIVNVLNRYFDVYFPRAMAMSAAMRASGTSDRFIYTTHPFLVSLYVDCPPNFVLNGMSLHCPTSTQVDAMEGALRRGDIVMHAGPFNVEIENVGDPGLWGDAVALSRDLAQRYGI 435
            + +KKVH++ MNHLDVG+NGI P  GFI NVLN+YF VYFP+A+ +   +   G +++ +Y +HP+LVS+Y+DCPPN VL G+ L CP  T++   E A++ G I  HAGP N+  E   DP +    + +S DL +R+GI
Sbjct:   36 KDVKKVHLIFMNHLDVGFNGIRPQLGFINNVLNKYFTVYFPQAVKVGLQLYMLGYAEKLMYMSHPWLVSMYLDCPPNLVLAGIQLQCPNKTELSNFEAAIKMGIITWHAGPMNMNNEMF-DPSMVDYTLQISEDLDKRFGI 175          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100864.193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001EE506933.310e-4353.96LOW QUALITY PROTEIN: uncharacterized protein LOC12... [more]
UPI0003F08BDB5.510e-4247.59uncharacterized protein LOC102807935 n=1 Tax=Sacco... [more]
UPI001B88D1886.670e-4050.35uncharacterized protein LOC121381225 n=1 Tax=Gigan... [more]
UPI00201F06089.450e-4051.08uncharacterized protein LOC124142894 n=1 Tax=Halio... [more]
A0A2T7NML9_POMCA9.480e-4047.86Uncharacterized protein n=2 Tax=Pomacea canalicula... [more]
A0A8B6DJW8_MYTGA3.150e-3950.00Uncharacterized protein n=3 Tax=Mytilus TaxID=6548... [more]
K1QIM2_CRAGI1.490e-3849.64Uncharacterized protein n=2 Tax=Crassostrea gigas ... [more]
UPI00201F767B1.640e-3850.35uncharacterized protein LOC124124794 isoform X1 n=... [more]
A0A8B8DLY6_CRAVI2.230e-3850.36uncharacterized protein LOC111127633 isoform X1 n=... [more]
UPI00201EFFAA4.210e-3847.52uncharacterized protein LOC124113675 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100864contigM-pyrifera_M_contig100864:235..669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score155.2
Seed ortholog evalue2.3e-35
Seed eggNOG ortholog10224.XP_006816873.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF5054)
EggNOG OGs28PB8@1,2QVYK@2759,39U15@33154,3BKQH@33208,3DEUS@33213
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size435
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815506.0843651-CDS-M-pyrifera_M_contig100864:234..6691622815506.0843651-CDS-M-pyrifera_M_contig100864:234..669Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100864 235..669 +
1692277441.990048-CDS-M-pyrifera_M_contig100864:234..6691692277441.990048-CDS-M-pyrifera_M_contig100864:234..669Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100864 235..669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100864.193.1prot_M-pyrifera_M_contig100864.193.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100864 235..669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100864.193.1

>prot_M-pyrifera_M_contig100864.193.1 ID=prot_M-pyrifera_M_contig100864.193.1|Name=mRNA_M-pyrifera_M_contig100864.193.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
WIAQEQIKKVHVVSMNHLDVGYNGIYPTTGFIVNVLNRYFDVYFPRAMAM
SAAMRASGTSDRFIYTTHPFLVSLYVDCPPNFVLNGMSLHCPTSTQVDAM
EGALRRGDIVMHAGPFNVEIENVGDPGLWGDAVALSRDLAQRYGI
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mRNA from alignment at M-pyrifera_M_contig100864:235..669+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100864.193.1 ID=mRNA_M-pyrifera_M_contig100864.193.1|Name=mRNA_M-pyrifera_M_contig100864.193.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=435bp|location=Sequence derived from alignment at M-pyrifera_M_contig100864:235..669+ (Macrocystis pyrifera P11B4 male)
TGGATAGCGCAAGAACAAATCAAGAAAGTACATGTGGTTAGTATGAATCA TCTGGATGTCGGATACAACGGGATTTATCCAACGACAGGGTTCATTGTAA ACGTGTTGAATCGTTACTTTGACGTGTACTTTCCCCGAGCAATGGCAATG AGTGCTGCAATGCGTGCTTCTGGGACCAGTGACAGGTTTATCTACACAAC ACATCCTTTCCTCGTATCACTCTATGTGGATTGCCCCCCAAATTTTGTGC TCAATGGCATGTCCCTCCACTGTCCGACAAGCACACAAGTTGATGCAATG GAAGGAGCTCTTCGTCGCGGAGACATTGTGATGCATGCAGGGCCATTCAA TGTGGAAATTGAAAACGTAGGCGATCCAGGGTTGTGGGGTGATGCTGTAG CCTTGTCACGTGATCTAGCACAAAGATATGGCATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100864:235..669+

>mRNA_M-pyrifera_M_contig100864.193.1 ID=mRNA_M-pyrifera_M_contig100864.193.1|Name=mRNA_M-pyrifera_M_contig100864.193.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig100864:235..669+ (Macrocystis pyrifera P11B4 male)
TGGATAGCGCAAGAACAAATCAAGAAAGTACATGTGGTTAGTATGAATCA
TCTGGATGTCGGATACAACGGGATTTATCCAACGACAGGGTTCATTGTAA
ACGTGTTGAATCGTTACTTTGACGTGTACTTTCCCCGAGCAATGGCAATG
AGTGCTGCAATGCGTGCTTCTGGGACCAGTGACAGGTTTATCTACACAAC
ACATCCTTTCCTCGTATCACTCTATGTGGATTGCCCCCCAAATTTTGTGC
TCAATGGCATGTCCCTCCACTGTCCGACAAGCACACAAGTTGATGCAATG
GAAGGAGCTCTTCGTCGCGGAGACATTGTGATGCATGCAGGGCCATTCAA
TGTGGAAATTGAAAACGTAGGCGATCCAGGGTTGTGGGGTGATGCTGTAG
CCTTGTCACGTGATCTAGCACAAAGATATGGCATTTGGATAGCGCAAGAA
CAAATCAAGAAAGTACATGTGGTTAGTATGAATCATCTGGATGTCGGATA
CAACGGGATTTATCCAACGACAGGGTTCATTGTAAACGTGTTGAATCGTT
ACTTTGACGTGTACTTTCCCCGAGCAATGGCAATGAGTGCTGCAATGCGT
GCTTCTGGGACCAGTGACAGGTTTATCTACACAACACATCCTTTCCTCGT
ATCACTCTATGTGGATTGCCCCCCAAATTTTGTGCTCAATGGCATGTCCC
TCCACTGTCCGACAAGCACACAAGTTGATGCAATGGAAGGAGCTCTTCGT
CGCGGAGACATTGTGATGCATGCAGGGCCATTCAATGTGGAAATTGAAAA
CGTAGGCGATCCAGGGTTGTGGGGTGATGCTGTAGCCTTGTCACGTGATC
TAGCACAAAGATATGGCATT
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