mRNA_M-pyrifera_M_contig82533.19295.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82533.19295.1
Unique NamemRNA_M-pyrifera_M_contig82533.19295.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82533.19295.1 vs. uniprot
Match: A0A1V9XZ72_9ACAR (Tetratricopeptide repeat protein 36 isoform 1 n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9XZ72_9ACAR)

HSP 1 Score: 65.9 bits (159), Expect = 9.800e-11
Identity = 52/125 (41.60%), Postives = 69/125 (55.20%), Query Frame = 1
Query:   22 RVKELAESGDLEGALRFLDEELE---SRGKSGILLNDRAQVHRLSGDLAAARRDLDEAIGVEEEKLPLYNAYTQRAALRREVGEPEAAISLDLKAAAFYGSKLARAVVE--PINPYAALCSMAVD 381
            R   LAE+G  E AL+ L + L    S  +   LLNDRAQV RL G+L+ A +DLD A+ +   +     A  Q+A L R  G  E A +L L+ +A  GS  AR+ +E  P NPYA LC+  V 
Sbjct:   43 RAVALAEAGQHEEALQLLGKLLNRSSSNHEKASLLNDRAQVQRLLGNLSGAAKDLDAALVLGVNRKAQRQALAQKALLERLSGRREVAQAL-LQRSAALGSIFARSQLEAEPTNPYAKLCNQMVQ 166          
BLAST of mRNA_M-pyrifera_M_contig82533.19295.1 vs. uniprot
Match: A0A4P9Y831_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y831_9FUNG)

HSP 1 Score: 60.8 bits (146), Expect = 3.720e-9
Identity = 45/118 (38.14%), Postives = 63/118 (53.39%), Query Frame = 1
Query:   16 GKRVKELAESGDLEGALRFLDEELESRGKSGILLNDRAQVHRLSGDLAAARRDLDEAIG-VEEEKLPLYNAYTQRAALRREVGEPEAAISLDLKAAAFYGSKLARAVVEPINPYAALC 366
            GK +K  AE+ DL+ AL   D+ +          N++AQ+ R+S     A   L+ AI     +K  L  AYTQRA LR+E+G+ E + S D +  A YG  LA+A     NPYA +C
Sbjct:    9 GKAIK-AAENNDLDTALHHCDQAISLEPTYASAYNNKAQILRMSKKSKIALDSLNLAIQHAHGDKRILRQAYTQRAILRKEMGDQEGSAS-DFEMGAKYGHTLAKAAATAENPYAKMC 124          
BLAST of mRNA_M-pyrifera_M_contig82533.19295.1 vs. uniprot
Match: A0A7M7MIQ3_VARDE (Uncharacterized protein n=2 Tax=Varroa TaxID=62624 RepID=A0A7M7MIQ3_VARDE)

HSP 1 Score: 61.6 bits (148), Expect = 3.970e-9
Identity = 48/121 (39.67%), Postives = 64/121 (52.89%), Query Frame = 1
Query:   22 RVKELAESGDLEGALRFLDEELE---SRGKSGILLNDRAQVHRLSGDLAAARRDLDEAIGVEEEKLPLYNAYTQRAALRREVGEPEAAISLDLKAAAFYGSKLARAVVE--PINPYAALCS 369
            R   +AE+G    A + L + L    S  +   LLNDRAQV RL G+L  A  DLD  + +   +     A TQ+A + R  G  E A +  L+ AA  GS+ ARA +E  P NPYA LC+
Sbjct:   43 RAVAVAEAGLYNEAHQLLSDLLNRSTSDNERAALLNDRAQVSRLLGNLTDATEDLDAVLALGVNRRAQRQALTQKALIERVSGRRETAKAF-LERAATMGSRFARAQIEAEPTNPYARLCN 162          
BLAST of mRNA_M-pyrifera_M_contig82533.19295.1 vs. uniprot
Match: A0A7M7KS17_VARDE (Uncharacterized protein n=2 Tax=Varroa TaxID=62624 RepID=A0A7M7KS17_VARDE)

HSP 1 Score: 61.6 bits (148), Expect = 5.180e-9
Identity = 48/121 (39.67%), Postives = 64/121 (52.89%), Query Frame = 1
Query:   22 RVKELAESGDLEGALRFLDEELE---SRGKSGILLNDRAQVHRLSGDLAAARRDLDEAIGVEEEKLPLYNAYTQRAALRREVGEPEAAISLDLKAAAFYGSKLARAVVE--PINPYAALCS 369
            R   +AE+G    A + L + L    S  +   LLNDRAQV RL G+L  A  DLD  + +   +     A TQ+A + R  G  E A +  L+ AA  GS+ ARA +E  P NPYA LC+
Sbjct:   60 RAVAVAEAGLYNEAHQLLSDLLNRSTSDNERAALLNDRAQVSRLLGNLTDATEDLDAVLALGVNRRAQRQALTQKALIERVSGRRETAKAF-LERAATMGSRFARAQIEAEPTNPYARLCN 179          
BLAST of mRNA_M-pyrifera_M_contig82533.19295.1 vs. uniprot
Match: A0A2T9Y1X0_9FUNG (Uncharacterized protein n=1 Tax=Smittium megazygosporum TaxID=133381 RepID=A0A2T9Y1X0_9FUNG)

HSP 1 Score: 59.7 bits (143), Expect = 2.690e-8
Identity = 44/126 (34.92%), Postives = 70/126 (55.56%), Query Frame = 1
Query:   19 KRVKELAESGDLEGALRFLDEELESRGKSGILLNDRAQVHRLSGDLAAARRDLDEAIGVEEEKLP-LYNAYTQRAALRREVGEPEAAISLDLKAAAFYGSKLARAVVEPINPYAALCSMAVDAVMK 393
            K   +LAE G+LE A   L + ++   +     N+RAQV+RL  D  +   DLD+AI   +  +  L  AYTQRA ++R +G+    +S D   AA  G+++A+      NP+A +C+ AV  +M+
Sbjct:   63 KEAVKLAEEGNLEEARDMLSQIIKEHPRYASAYNNRAQVYRLLKDDQSTLADLDKAILEGKSNIHVLSQAYTQRAIVKRSIGDENGCLS-DYTIAAELGNEVAKLGKVQENPFAKMCNTAVLKMMQ 187          
BLAST of mRNA_M-pyrifera_M_contig82533.19295.1 vs. uniprot
Match: UPI00193E800E (tetratricopeptide repeat protein 36 homolog n=1 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI00193E800E)

HSP 1 Score: 59.7 bits (143), Expect = 2.770e-8
Identity = 43/122 (35.25%), Postives = 65/122 (53.28%), Query Frame = 1
Query:   31 ELAESGDLEGALRFLDEELESRGKSGILLNDRAQVHRLSGDLAAARRDLDEAIGVEE--EKLPLYNAYTQRAALRREVGEPEAAISLDLKAAAFYGSKLARAVVEPINPYAALCSMAVDAVM 390
            +LAESGDL GA+       +         N+RAQV+R+ G++ AA  DL+ AI +           A  QRA L  ++   E A++ D  AAA +G++ A+  +  +NPYAALC+  +   M
Sbjct:   65 QLAESGDLSGAVDAFSRAAQKAPHRPAAYNNRAQVYRIQGNIDAAMLDLNRAIELSGGGRGKSGSQALCQRALLHLKMENREGAVA-DFTAAARHGNRFAKTQLVKLNPYAALCNQMLSIAM 185          
BLAST of mRNA_M-pyrifera_M_contig82533.19295.1 vs. uniprot
Match: A0A507DTY6_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DTY6_9FUNG)

HSP 1 Score: 58.5 bits (140), Expect = 6.510e-8
Identity = 44/113 (38.94%), Postives = 62/113 (54.87%), Query Frame = 1
Query:   34 LAESGDLEGALRFLDEELESRGKSGILLNDRAQVHRLSGDLAAARRDLDEAIGVEEEKLP-LYNAYTQRAALRREVGEPEAAISLDLKAAAFYGSKLARAVVEPINPYAALCS 369
            LAE   ++ +L  L+E +          N+RAQ +RL GD   A  DL  AI       P L  AYTQRA +R+E+G+ EA    D    A YG+++A+A V+  NPYA +C+
Sbjct:   61 LAEKDAVDASLEKLNECIRLEPTYASAYNNRAQAYRLKGDTTKALDDLKLAIEHGAGNPPILKQAYTQRAIVRKELGD-EAGSESDFAQGARYGNEIAKAAVKN-NPYAKMCN 171          
BLAST of mRNA_M-pyrifera_M_contig82533.19295.1 vs. uniprot
Match: W2STD5_NECAM (Tetratricopeptide repeat protein (Fragment) n=1 Tax=Necator americanus TaxID=51031 RepID=W2STD5_NECAM)

HSP 1 Score: 57.0 bits (136), Expect = 1.340e-7
Identity = 40/113 (35.40%), Postives = 63/113 (55.75%), Query Frame = 1
Query:   34 LAESGDLEGALRFLDEELESRGKSGILLNDRAQVHRLSGDLAAARRDLDEAIGVEEEK-LPLYNAYTQRAALRREVGEPEAAISLDLKAAAFYGSKLARAVVEPINPYAALCS 369
            LAE+G L+ A+R   E +E    +    N++AQ  RL+G    A  DL++AI + +        A+ QRA + R  GE + A + D + AA +GS  A+  +  +NPYAA+C+
Sbjct:   21 LAETGQLDAAIRKFSEAIEKCPMNPSAYNNKAQALRLAGKPEEALTDLEQAIIISKGTGKSACQAFVQRAMIHRLRGEDDLARA-DFQKAADFGSSFAKIQMVALNPYAAMCN 132          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82533.19295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A1V9XZ72_9ACAR9.800e-1141.60Tetratricopeptide repeat protein 36 isoform 1 n=1 ... [more]
A0A4P9Y831_9FUNG3.720e-938.14Uncharacterized protein (Fragment) n=1 Tax=Piptoce... [more]
A0A7M7MIQ3_VARDE3.970e-939.67Uncharacterized protein n=2 Tax=Varroa TaxID=62624... [more]
A0A7M7KS17_VARDE5.180e-939.67Uncharacterized protein n=2 Tax=Varroa TaxID=62624... [more]
A0A2T9Y1X0_9FUNG2.690e-834.92Uncharacterized protein n=1 Tax=Smittium megazygos... [more]
UPI00193E800E2.770e-835.25tetratricopeptide repeat protein 36 homolog n=1 Ta... [more]
A0A507DTY6_9FUNG6.510e-838.94Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
W2STD5_NECAM1.340e-735.40Tetratricopeptide repeat protein (Fragment) n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82533contigM-pyrifera_M_contig82533:204..665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score72.8
Seed ortholog evalue1.4e-10
Seed eggNOG ortholog10224.XP_002734804.1
Preferred nameTTC36
Hectar predicted targeting categoryother localisation
GOsGO:0006996,GO:0007275,GO:0007368,GO:0007389,GO:0007423,GO:0007507,GO:0008150,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032474,GO:0032501,GO:0032502,GO:0042471,GO:0042472,GO:0043583,GO:0044085,GO:0044782,GO:0048513,GO:0048562,GO:0048568,GO:0048598,GO:0048731,GO:0048839,GO:0048840,GO:0048856,GO:0060271,GO:0061371,GO:0070925,GO:0071840,GO:0072359,GO:0090596,GO:0120031,GO:0120036
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs3A05J@33154,3BPHK@33208,3D6DK@33213,KOG4555@1,KOG4555@2759
COG Functional cat.T
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons2
Model size399
Cds size399
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816732.1485243-CDS-M-pyrifera_M_contig82533:203..4141622816732.1485243-CDS-M-pyrifera_M_contig82533:203..414Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82533 204..414 +
1692278145.7727995-CDS-M-pyrifera_M_contig82533:203..4141692278145.7727995-CDS-M-pyrifera_M_contig82533:203..414Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82533 204..414 +
1622816732.1599188-CDS-M-pyrifera_M_contig82533:477..6651622816732.1599188-CDS-M-pyrifera_M_contig82533:477..665Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82533 478..665 +
1692278145.7837286-CDS-M-pyrifera_M_contig82533:477..6651692278145.7837286-CDS-M-pyrifera_M_contig82533:477..665Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82533 478..665 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82533.19295.1prot_M-pyrifera_M_contig82533.19295.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82533 204..665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82533.19295.1

>prot_M-pyrifera_M_contig82533.19295.1 ID=prot_M-pyrifera_M_contig82533.19295.1|Name=mRNA_M-pyrifera_M_contig82533.19295.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
MDAEVGKRVKELAESGDLEGALRFLDEELESRGKSGILLNDRAQVHRLSG
DLAAARRDLDEAIGVEEEKLPLYNAYTQRAALRREVGEPEAAISLDLKAA
AFYGSKLARAVVEPINPYAALCSMAVDAVMKAE
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mRNA from alignment at M-pyrifera_M_contig82533:204..665+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82533.19295.1 ID=mRNA_M-pyrifera_M_contig82533.19295.1|Name=mRNA_M-pyrifera_M_contig82533.19295.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig82533:204..665+ (Macrocystis pyrifera P11B4 male)
ATGGATGCAGAAGTTGGGAAACGGGTGAAGGAACTTGCAGAAAGTGGAGA CTTGGAAGGCGCGTTGCGTTTTCTGGACGAGGAGTTGGAGAGTCGGGGGA AGAGTGGTATTTTATTGAATGATCGTGCCCAAGTCCATCGTTTGAGTGGC GACCTTGCAGCAGCTCGTCGAGATTTGGACGAAGCGATTGGAGTGGAAGA GGAGAAGCTTCGTTTGGCTGGGAAGGAGGTGTGGAGAGAGGAAGGTGGGC CGGATTGGGGGGAGCAGACACCAGCTCTCTACAACGCATATACCCAGAGA GCCGCACTGCGCCGAGAAGTGGGAGAACCAGAGGCAGCCATTTCTCTCGA CCTCAAAGCTGCTGCTTTCTATGGCTCCAAACTTGCCAGGGCAGTCGTGG AGCCAATAAACCCGTACGCTGCCCTCTGCAGCATGGCAGTGGACGCCGTC ATGAAAGCAGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82533:204..665+

>mRNA_M-pyrifera_M_contig82533.19295.1 ID=mRNA_M-pyrifera_M_contig82533.19295.1|Name=mRNA_M-pyrifera_M_contig82533.19295.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig82533:204..665+ (Macrocystis pyrifera P11B4 male)
ATGGATGCAGAAGTTGGGAAACGGGTGAAGGAACTTGCAGAAAGTGGAGA
CTTGGAAGGCGCGTTGCGTTTTCTGGACGAGGAGTTGGAGAGTCGGGGGA
AGAGTGGTATTTTATTGAATGATCGTGCCCAAGTCCATCGTTTGAGTGGC
GACCTTGCAGCAGCTCGTCGAGATTTGGACGAAGCGATTGGAGTGGAAGA
GGAGAAGCTTCATGGATGCAGAAGTTGGGAAACGGGTGAAGGAACTTGCA
GAAAGTGGAGACTTGGAAGGCGCGTTGCGTTTTCTGGACGAGGAGTTGGA
GAGTCGGGGGAAGAGTGGTATTTTATTGAATGATCGTGCCCAAGTCCATC
GTTTGAGTGGCGACCTTGCAGCAGCTCGTCGAGATTTGGACGAAGCGATT
GGAGTGGAAGAGGAGAAGCTTCCTCTCTACAACGCATATACCCAGAGAGC
CGCACTGCGCCGAGAAGTGGGAGAACCAGAGGCAGCCATTTCTCTCGACC
TCAAAGCTGCTGCTTTCTATGGCTCCAAACTTGCCAGGGCAGTCGTGGAG
CCAATAAACCCGTACGCTGCCCTCTGCAGCATGGCAGTGGACGCCGTCAT
GAAAGCAGAGCTCTCTACAACGCATATACCCAGAGAGCCGCACTGCGCCG
AGAAGTGGGAGAACCAGAGGCAGCCATTTCTCTCGACCTCAAAGCTGCTG
CTTTCTATGGCTCCAAACTTGCCAGGGCAGTCGTGGAGCCAATAAACCCG
TACGCTGCCCTCTGCAGCATGGCAGTGGACGCCGTCATGAAAGCAGAG
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