mRNA_M-pyrifera_M_contig82532.19294.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82532.19294.1
Unique NamemRNA_M-pyrifera_M_contig82532.19294.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig82532.19294.1 vs. uniprot
Match: A0A3B0XXP7_9ZZZZ (A2M domain-containing protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0XXP7_9ZZZZ)

HSP 1 Score: 56.6 bits (135), Expect = 7.580e-7
Identity = 46/121 (38.02%), Postives = 65/121 (53.72%), Query Frame = 1 
Query:    1 DDAFVIALAARTLWRAGRHLDVAKELSKQLELWQDNDGIVRGPQQPHTLTRSGPRDSETEVTALSALMWESLANSKSNATVALYGAIGAL-LAREDRAGRFGATQATVLALEAINGFSEAQ 360
            DD++VIALAA  L+ +G     A +LS +L    D  G + G     ++TRSG      E T+L+ L W      K +A  A    +    L    +AGRFG+TQ+TVLAL+AIN +  A+
Sbjct: 1056 DDSYVIALAANILYLSGEK-QAATDLSARLSKLVDKQGAIMGA--VTSITRSGGDALAIETTSLALLAWL-----KDDAQWAAQVEVSMKWLFERSKAGRFGSTQSTVLALKAINAYDAAR 1168
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BLAST of mRNA_M-pyrifera_M_contig82532.19294.1 vs. uniprot
Match: A0A1Y1HV73_KLENI (Alpha-2-macroglobulin n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HV73_KLENI)

HSP 1 Score: 55.8 bits (133), Expect = 1.340e-6
Identity = 47/112 (41.96%), Postives = 61/112 (54.46%), Query Frame = 1 
Query:    4 DAFVIALAARTLWRAGRHLDVAKELSKQLELWQDNDGIVRGPQQPHTLTRSGPRDSETEVTALSALMWESLANSKSNATVALYGAIGALLAREDRAGRFGATQATVLALEAI 339
            D + +A+ A TL++ GR  D A +L++ L+  Q  DG VRG     ++TRSG      E TAL AL W    N       A   AI   +A     GRFG+TQATVLAL+AI
Sbjct:  311 DPYFVAMVADTLYKVGRK-DEAGQLARGLQKHQKADGSVRGA--TTSITRSGGDSLLVETTALVALCW---LNDVETFGAAARRAID-WIATRCAGGRFGSTQATVLALKAI 415
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BLAST of mRNA_M-pyrifera_M_contig82532.19294.1 vs. uniprot
Match: A0A3B0X3N5_9ZZZZ (TED_complement domain-containing protein (Fragment) n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0X3N5_9ZZZZ)

HSP 1 Score: 52.4 bits (124), Expect = 1.910e-5
Identity = 46/121 (38.02%), Postives = 64/121 (52.89%), Query Frame = 1 
Query:    1 DDAFVIALAARTLWRAGRHLDVAKELSKQLELWQDNDGIVRGPQQPHTLTRSGPRDSETEVTALSALMWESLANSKSNATVALYGAIGAL-LAREDRAGRFGATQATVLALEAINGFSEAQ 360
            DD +VIALAA   + AG    +A  LSK+L       G V       ++TRSG    + E T+L+ L W      K +A  A    +    L  + +AGRFG+TQ+TVLAL+AIN +  A+
Sbjct:    8 DDTYVIALAANVFYIAGDK-KIASTLSKRLAEAVGKTGSVADSLT--SITRSGGESLDIETTSLALLAWL-----KDDAKWAAQVEVSMRWLFEQSKAGRFGSTQSTVLALKAINVYDAAR 120
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82532.19294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A3B0XXP7_9ZZZZ7.580e-738.02A2M domain-containing protein n=1 Tax=hydrothermal... [more]
A0A1Y1HV73_KLENI1.340e-641.96Alpha-2-macroglobulin n=1 Tax=Klebsormidium nitens... [more]
A0A3B0X3N5_9ZZZZ1.910e-538.02TED_complement domain-containing protein (Fragment... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82532contigM-pyrifera_M_contig82532:97..456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816732.1118126-CDS-M-pyrifera_M_contig82532:96..4561622816732.1118126-CDS-M-pyrifera_M_contig82532:96..456Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82532 97..456 +
1692278145.7625897-CDS-M-pyrifera_M_contig82532:96..4561692278145.7625897-CDS-M-pyrifera_M_contig82532:96..456Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82532 97..456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82532.19294.1prot_M-pyrifera_M_contig82532.19294.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82532 97..456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82532.19294.1

>prot_M-pyrifera_M_contig82532.19294.1 ID=prot_M-pyrifera_M_contig82532.19294.1|Name=mRNA_M-pyrifera_M_contig82532.19294.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
DDAFVIALAARTLWRAGRHLDVAKELSKQLELWQDNDGIVRGPQQPHTLT
RSGPRDSETEVTALSALMWESLANSKSNATVALYGAIGALLAREDRAGRF
GATQATVLALEAINGFSEAQ
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mRNA from alignment at M-pyrifera_M_contig82532:97..456+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82532.19294.1 ID=mRNA_M-pyrifera_M_contig82532.19294.1|Name=mRNA_M-pyrifera_M_contig82532.19294.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig82532:97..456+ (Macrocystis pyrifera P11B4 male)
GATGATGCATTCGTGATTGCGTTGGCAGCAAGAACCCTATGGCGTGCTGG
GAGGCATTTGGATGTTGCGAAAGAGCTTTCCAAACAATTGGAGCTGTGGC
AGGACAATGACGGGATTGTTCGAGGTCCACAACAACCTCACACCCTCACT
CGATCAGGGCCACGAGATTCAGAGACAGAAGTGACAGCGCTGTCTGCTCT
GATGTGGGAGTCACTCGCAAATTCCAAGTCAAATGCGACAGTAGCTCTGT
ATGGAGCGATTGGCGCATTGCTTGCACGAGAAGATCGGGCTGGGAGGTTT
GGGGCGACGCAGGCAACAGTACTGGCACTTGAAGCGATTAACGGGTTTTC
TGAAGCTCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82532:97..456+

>mRNA_M-pyrifera_M_contig82532.19294.1 ID=mRNA_M-pyrifera_M_contig82532.19294.1|Name=mRNA_M-pyrifera_M_contig82532.19294.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig82532:97..456+ (Macrocystis pyrifera P11B4 male)
GATGATGCATTCGTGATTGCGTTGGCAGCAAGAACCCTATGGCGTGCTGG
GAGGCATTTGGATGTTGCGAAAGAGCTTTCCAAACAATTGGAGCTGTGGC
AGGACAATGACGGGATTGTTCGAGGTCCACAACAACCTCACACCCTCACT
CGATCAGGGCCACGAGATTCAGAGACAGAAGTGACAGCGCTGTCTGCTCT
GATGTGGGAGTCACTCGCAAATTCCAAGTCAAATGCGACAGTAGCTCTGT
ATGGAGCGATTGGCGCATTGCTTGCACGAGAAGATCGGGCTGGGAGGTTT
GGGGCGACGCAGGCAACAGTACTGGCACTTGAAGCGATTAACGGGTTTTC
TGAAGCTCAAGATGATGCATTCGTGATTGCGTTGGCAGCAAGAACCCTAT
GGCGTGCTGGGAGGCATTTGGATGTTGCGAAAGAGCTTTCCAAACAATTG
GAGCTGTGGCAGGACAATGACGGGATTGTTCGAGGTCCACAACAACCTCA
CACCCTCACTCGATCAGGGCCACGAGATTCAGAGACAGAAGTGACAGCGC
TGTCTGCTCTGATGTGGGAGTCACTCGCAAATTCCAAGTCAAATGCGACA
GTAGCTCTGTATGGAGCGATTGGCGCATTGCTTGCACGAGAAGATCGGGC
TGGGAGGTTTGGGGCGACGCAGGCAACAGTACTGGCACTTGAAGCGATTA
ACGGGTTTTCTGAAGCTCAA
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