mRNA_M-pyrifera_M_contig82528.19292.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82528.19292.1
Unique NamemRNA_M-pyrifera_M_contig82528.19292.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82528.19292.1 vs. uniprot
Match: A0A1E1X592_9ACAR (HEAT repeat-containing protein 1 (Fragment) n=1 Tax=Amblyomma aureolatum TaxID=187763 RepID=A0A1E1X592_9ACAR)

HSP 1 Score: 73.6 bits (179), Expect = 2.720e-12
Identity = 45/122 (36.89%), Postives = 67/122 (54.92%), Query Frame = 1
Query:    1 WKTVGLHTFGLLDKLRQLLPVPAFVAVIDGLLRHPDTAVRRRALHFLNAQLAAATSTGGLAPGSAALFLDLVPGLLRAAKDSNETPA------NRQAAILSVDVLVRFLGPEHRRAFRSTLD 348
            WK +      ++ K+  LLP   FV+V+  L+ H   ++RR A+  LN +LAA    G     S    L+LVP LL+ A+  +++ +      NRQ A+LS+ +L+R LGPEHR  F  T D
Sbjct:  704 WKALSAKLHDIVHKVNGLLPSGQFVSVVRSLMCHELPSIRRSAMDMLNGKLAAKDYFGEEDTQS---LLELVPMLLQVARGKSDSTSGEEAALNRQTALLSLKLLIRMLGPEHRDTFAETYD 822          
BLAST of mRNA_M-pyrifera_M_contig82528.19292.1 vs. uniprot
Match: A0A023GFM2_AMBTT (HEAT repeat-containing protein 1 (Fragment) n=1 Tax=Amblyomma triste TaxID=251400 RepID=A0A023GFM2_AMBTT)

HSP 1 Score: 70.5 bits (171), Expect = 3.090e-11
Identity = 45/130 (34.62%), Postives = 63/130 (48.46%), Query Frame = 1
Query:    1 WKTVGLHTFGLLDKLRQLLPVPAFVAVIDGLLRHPDTAVRRRALHFLNAQLAAATSTGGLAPGSAALFLDLVPGLLRAA------KDSNETPANRQAAILSVDVLVRFLGPEHRRAFRSTLDEALALATE 372
            WKT+      ++ K+  LLP   FV+V+  L+ H   ++RR A+  LN +LA                L+ VP LLR A          E   NRQ A+LS+ +L+R LGPEHR  F  T D    L ++
Sbjct:  178 WKTLSAKLHDIIHKVNGLLPSGQFVSVVRSLMCHELPSIRRSAMDMLNGKLACKDY---FLEEDTQPLLEFVPMLLRVAGGKTGTASGEEAAVNRQTAMLSLKLLIRMLGPEHRDTFTETYDLVYQLLSD 304          
BLAST of mRNA_M-pyrifera_M_contig82528.19292.1 vs. uniprot
Match: A0A224ZB14_9ACAR (HEAT repeat-containing protein 1 n=4 Tax=Rhipicephalus TaxID=34630 RepID=A0A224ZB14_9ACAR)

HSP 1 Score: 63.9 bits (154), Expect = 6.510e-9
Identity = 47/145 (32.41%), Postives = 68/145 (46.90%), Query Frame = 1
Query:    1 WKTVGLHTFGLLDKLRQLLPVPAFVAVIDGLLRHPDTAVRRRALHFLNAQLAAATSTGGLAPGSAALFLDLVPGLLRAAK---------------------DSNETPANRQAAILSVDVLVRFLGPEHRRAFRSTLDEALALATE 372
            WK +      ++ K+  LLP   FV+V+  L+ H  +++RR A+  LN +LAA       A       L+LVP LL+ A+                      S E   NRQ A+LS+ +L+R LG EHR AF    D A  L ++
Sbjct: 1515 WKALLSKLHDVVHKVNGLLPSGQFVSVVQSLMCHELSSIRRSAMDMLNEKLAAKDY---FAEEDTQSLLELVPMLLQMARGKSVSAAPVAPSVGDGTSGATSSEEAALNRQTALLSLKLLIRTLGAEHRDAFAEVYDLAHQLLSD 1656          
BLAST of mRNA_M-pyrifera_M_contig82528.19292.1 vs. uniprot
Match: UPI00189B97E1 (LOW QUALITY PROTEIN: HEAT repeat-containing protein 1-like n=1 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI00189B97E1)

HSP 1 Score: 63.9 bits (154), Expect = 6.510e-9
Identity = 47/145 (32.41%), Postives = 68/145 (46.90%), Query Frame = 1
Query:    1 WKTVGLHTFGLLDKLRQLLPVPAFVAVIDGLLRHPDTAVRRRALHFLNAQLAAATSTGGLAPGSAALFLDLVPGLLRAAK---------------------DSNETPANRQAAILSVDVLVRFLGPEHRRAFRSTLDEALALATE 372
            WK +      ++ K+  LLP   FV+V+  L+ H  +++RR A+  LN +LAA       A       L+LVP LL+ A+                      S E   NRQ A+LS+ +L+R LG EHR AF    D A  L ++
Sbjct: 1515 WKALLSKLHDIVHKVNGLLPSGQFVSVVRSLMCHELSSIRRSAMDMLNEKLAAKXY---FAEEDTQSLLELVPTLLQMARGKSSSTVPVAPADGDKTSQATSSEEAALNRQTALLSLKLLIRTLGAEHRDAFAEVYDLAHQLLSD 1656          
BLAST of mRNA_M-pyrifera_M_contig82528.19292.1 vs. uniprot
Match: A0A8H7BTE7_9FUNG (U3 small nucleolar RNA-associated protein 10 n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BTE7_9FUNG)

HSP 1 Score: 63.5 bits (153), Expect = 8.860e-9
Identity = 40/121 (33.06%), Postives = 64/121 (52.89%), Query Frame = 1
Query:    1 WKTVGLHTFGLLDKLRQLLPVPAFVAVIDGLLRHPDTAVRRRALHFLNAQLAAATSTGGLAPGSAALFLDLVPGLL-----RAAKDSNETPA-NRQAAILSVDVLVRFLGPEHRRAFRSTL 345
            W+ +    + +L+K+  LLP+ AFV VI  L +HP+ AVRRRA+  LN ++A  +  G +      LF+ L+  L       A+K S E  A N+Q+A+L +  L +  G  +   F   +
Sbjct: 1543 WRAIPKVVYDVLEKINALLPLRAFVGVISHLSKHPEMAVRRRAMDILNQKIA--SFEGRMPEDDEGLFIHLITDLTTLIETEASKASEEEAAINKQSALLCISSLAKLCGGIYPAQFADAI 1661          
BLAST of mRNA_M-pyrifera_M_contig82528.19292.1 vs. uniprot
Match: UPI001895010B (LOW QUALITY PROTEIN: HEAT repeat-containing protein 1-like n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI001895010B)

HSP 1 Score: 62.8 bits (151), Expect = 1.640e-8
Identity = 48/145 (33.10%), Postives = 67/145 (46.21%), Query Frame = 1
Query:    1 WKTVGLHTFGLLDKLRQLLPVPAFVAVIDGLLRHPDTAVRRRALHFLNAQLAAATSTGGLAPGSAALFLDLVPGLLR---------------------AAKDSNETPANRQAAILSVDVLVRFLGPEHRRAFRSTLDEALALATE 372
            WK +      ++ K+  LLP   FV+VI  L+ H  +++RR A+  LN +LAA       A       L+LVP LL+                      A  S E   NRQ A+LS+ +L+R LG EHR AF    D A  L ++
Sbjct: 1518 WKALLSKLHDVVHKVNGLLPSGQFVSVIRSLMCHELSSIRRSAMDMLNEKLAAKDY---FAEEDTQSLLELVPMLLQMAHGKSLSNMPSAPSVGDRTSGATSSEEAALNRQTALLSLKLLIRTLGAEHRDAFAEVYDLAHQLLSD 1659          
BLAST of mRNA_M-pyrifera_M_contig82528.19292.1 vs. uniprot
Match: L7MHN9_RHIPC (HEAT repeat-containing protein 1 (Fragment) n=2 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7MHN9_RHIPC)

HSP 1 Score: 58.5 bits (140), Expect = 4.630e-7
Identity = 46/145 (31.72%), Postives = 66/145 (45.52%), Query Frame = 1
Query:    1 WKTVGLHTFGLLDKLRQLLPVPAFVAVIDGLLRHPDTAVRRRALHFLNAQLAAATSTGGLAPGSAALFLDLVPGLLRAAKD---------------------SNETPANRQAAILSVDVLVRFLGPEHRRAFRSTLDEALALATE 372
            WK +      ++ K+  LLP   FV+V   L+ H  +++RR ++  LN +LAA       A       L+LVP LL+ A                       S E   NRQ A+LS+ +L+R LG EHR AF    D A  L ++
Sbjct:  542 WKALLSKLHDVVHKVNGLLPSGQFVSVARSLMCHELSSIRRSSMDMLNEKLAAKDY---FAEEDTQSLLELVPMLLQMAGGKSLSVVPSAPSIGDGTSGATLSEEAALNRQTALLSLKLLIRTLGAEHRDAFAEVYDLAHQLLSD 683          
BLAST of mRNA_M-pyrifera_M_contig82528.19292.1 vs. uniprot
Match: L7LZ21_RHIPC (HEAT repeat-containing protein 1 n=1 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7LZ21_RHIPC)

HSP 1 Score: 58.5 bits (140), Expect = 4.770e-7
Identity = 46/145 (31.72%), Postives = 66/145 (45.52%), Query Frame = 1
Query:    1 WKTVGLHTFGLLDKLRQLLPVPAFVAVIDGLLRHPDTAVRRRALHFLNAQLAAATSTGGLAPGSAALFLDLVPGLLRAAKD---------------------SNETPANRQAAILSVDVLVRFLGPEHRRAFRSTLDEALALATE 372
            WK +      ++ K+  LLP   FV+V   L+ H  +++RR ++  LN +LAA       A       L+LVP LL+ A                       S E   NRQ A+LS+ +L+R LG EHR AF    D A  L ++
Sbjct: 1141 WKALLSKLHDVVHKVNGLLPSGQFVSVARSLMCHELSSIRRSSMDMLNEKLAAKDY---FAEEDTQSLLELVPMLLQMAGGKSLSVVPSAPSIGDGTSGATLSEEAALNRQTALLSLKLLIRTLGAEHRDAFAEVYDLAHQLLSD 1282          
BLAST of mRNA_M-pyrifera_M_contig82528.19292.1 vs. uniprot
Match: A0A0B7N0I9_9FUNG (U3 small nucleolar RNA-associated protein 10 n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7N0I9_9FUNG)

HSP 1 Score: 57.8 bits (138), Expect = 9.000e-7
Identity = 36/123 (29.27%), Postives = 64/123 (52.03%), Query Frame = 1
Query:    1 WKTVGLHTFGLLDKLRQLLPVPAFVAVIDGLLRHPDTAVRRRALHFLNAQLAAATSTGGLAP-GSAALFLDLVPGLLRAAKDSN-------ETPANRQAAILSVDVLVRFLGPEHRRAFRSTL 345
            W+ +    + +LDK+  LLP+ AFV VI  L+RH D+A+RR+AL+  N ++    S  G AP G   + + ++  L +  +  +       +   N+Q+A+L +  L + LG  +   F   +
Sbjct: 1540 WRAILKVVYDVLDKVNALLPLDAFVNVISELIRHKDSAIRRKALNIFNDKI---VSFDGHAPEGFEDVLVQMISNLTQVIETESVVLSSEEDRAVNKQSALLCIASLAKILGSLYPGQFAEAI 1659          
BLAST of mRNA_M-pyrifera_M_contig82528.19292.1 vs. uniprot
Match: A0A068SA54_9FUNG (U3 small nucleolar RNA-associated protein 10 n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068SA54_9FUNG)

HSP 1 Score: 55.1 bits (131), Expect = 7.630e-6
Identity = 34/123 (27.64%), Postives = 61/123 (49.59%), Query Frame = 1
Query:    1 WKTVGLHTFGLLDKLRQLLPVPAFVAVIDGLLRHPDTAVRRRALHFLNAQL----AAATSTGGLAPGSAALFLDLVPGLLRAAKDSNETPANRQAAILSVDVLVRFLGPEHRRAFRSTLDEAL 357
            W+ +    F +LDK+  LLP+ AFV V+  L++H +TA+RR+A++  N ++     A      L       F  ++    + + +  ++  N+Q+A++ +  L   LG  H  AF   L   L
Sbjct: 1533 WRNILKVVFDVLDKVNGLLPLDAFVKVVTHLIKHQETAIRRKAMNLFNERINMFEVADEDEEQLLVNMVKEFTAVIENESKMSSEE-DSAINKQSALMCISSLTSILGNVHPAAFVDALPTIL 1654          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82528.19292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A1E1X592_9ACAR2.720e-1236.89HEAT repeat-containing protein 1 (Fragment) n=1 Ta... [more]
A0A023GFM2_AMBTT3.090e-1134.62HEAT repeat-containing protein 1 (Fragment) n=1 Ta... [more]
A0A224ZB14_9ACAR6.510e-932.41HEAT repeat-containing protein 1 n=4 Tax=Rhipiceph... [more]
UPI00189B97E16.510e-932.41LOW QUALITY PROTEIN: HEAT repeat-containing protei... [more]
A0A8H7BTE7_9FUNG8.860e-933.06U3 small nucleolar RNA-associated protein 10 n=1 T... [more]
UPI001895010B1.640e-833.10LOW QUALITY PROTEIN: HEAT repeat-containing protei... [more]
L7MHN9_RHIPC4.630e-731.72HEAT repeat-containing protein 1 (Fragment) n=2 Ta... [more]
L7LZ21_RHIPC4.770e-731.72HEAT repeat-containing protein 1 n=1 Tax=Rhipiceph... [more]
A0A0B7N0I9_9FUNG9.000e-729.27U3 small nucleolar RNA-associated protein 10 n=1 T... [more]
A0A068SA54_9FUNG7.630e-627.64U3 small nucleolar RNA-associated protein 10 n=2 T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82528contigM-pyrifera_M_contig82528:1..465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue4.2e-11
Seed eggNOG ortholog112098.XP_008607321.1
KEGG koko:K14550
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006355,GO:0006356,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034455,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045893,GO:0045935,GO:0045943,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.rRNA processing
EggNOG OGsKOG1837@1,KOG1837@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size465
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816732.0479193-CDS-M-pyrifera_M_contig82528:0..4651622816732.0479193-CDS-M-pyrifera_M_contig82528:0..465Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82528 1..465 -
1692278145.7391486-CDS-M-pyrifera_M_contig82528:0..4651692278145.7391486-CDS-M-pyrifera_M_contig82528:0..465Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82528 1..465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82528.19292.1prot_M-pyrifera_M_contig82528.19292.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82528 1..465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82528.19292.1

>prot_M-pyrifera_M_contig82528.19292.1 ID=prot_M-pyrifera_M_contig82528.19292.1|Name=mRNA_M-pyrifera_M_contig82528.19292.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
WKTVGLHTFGLLDKLRQLLPVPAFVAVIDGLLRHPDTAVRRRALHFLNAQ
LAAATSTGGLAPGSAALFLDLVPGLLRAAKDSNETPANRQAAILSVDVLV
RFLGPEHRRAFRSTLDEALALATEGSGDGEEGEEGNALVRAGACVLLGSL
AAILG
back to top

mRNA from alignment at M-pyrifera_M_contig82528:1..465-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82528.19292.1 ID=mRNA_M-pyrifera_M_contig82528.19292.1|Name=mRNA_M-pyrifera_M_contig82528.19292.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=465bp|location=Sequence derived from alignment at M-pyrifera_M_contig82528:1..465- (Macrocystis pyrifera P11B4 male)
TGGAAGACTGTGGGATTGCATACGTTTGGATTGCTGGACAAACTGCGCCA ACTTTTGCCAGTCCCTGCATTTGTTGCAGTGATTGATGGGTTGTTGCGAC ACCCAGACACTGCGGTTCGACGCAGAGCATTACATTTCCTCAATGCACAG CTTGCTGCTGCAACCTCCACGGGTGGACTTGCTCCAGGATCTGCAGCACT GTTCCTTGACCTTGTCCCAGGGCTCTTGCGTGCTGCAAAAGACAGCAATG AAACCCCAGCGAATCGACAAGCTGCTATTCTTTCTGTTGATGTCTTAGTT CGTTTCCTCGGACCAGAACACCGACGAGCATTCCGTTCCACTCTTGATGA AGCATTGGCTCTTGCAACTGAAGGCAGTGGAGATGGAGAGGAAGGAGAGG AAGGAAATGCGTTGGTACGTGCTGGTGCATGTGTGTTGCTTGGTTCCTTG GCTGCGATTTTGGGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig82528:1..465-

>mRNA_M-pyrifera_M_contig82528.19292.1 ID=mRNA_M-pyrifera_M_contig82528.19292.1|Name=mRNA_M-pyrifera_M_contig82528.19292.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig82528:1..465- (Macrocystis pyrifera P11B4 male)
TGGAAGACTGTGGGATTGCATACGTTTGGATTGCTGGACAAACTGCGCCA
ACTTTTGCCAGTCCCTGCATTTGTTGCAGTGATTGATGGGTTGTTGCGAC
ACCCAGACACTGCGGTTCGACGCAGAGCATTACATTTCCTCAATGCACAG
CTTGCTGCTGCAACCTCCACGGGTGGACTTGCTCCAGGATCTGCAGCACT
GTTCCTTGACCTTGTCCCAGGGCTCTTGCGTGCTGCAAAAGACAGCAATG
AAACCCCAGCGAATCGACAAGCTGCTATTCTTTCTGTTGATGTCTTAGTT
CGTTTCCTCGGACCAGAACACCGACGAGCATTCCGTTCCACTCTTGATGA
AGCATTGGCTCTTGCAACTGAAGGCAGTGGAGATGGAGAGGAAGGAGAGG
AAGGAAATGCGTTGGTACGTGCTGGTGCATGTGTGTTGCTTGGTTCCTTG
GCTGCGATTTTGGGATGGAAGACTGTGGGATTGCATACGTTTGGATTGCT
GGACAAACTGCGCCAACTTTTGCCAGTCCCTGCATTTGTTGCAGTGATTG
ATGGGTTGTTGCGACACCCAGACACTGCGGTTCGACGCAGAGCATTACAT
TTCCTCAATGCACAGCTTGCTGCTGCAACCTCCACGGGTGGACTTGCTCC
AGGATCTGCAGCACTGTTCCTTGACCTTGTCCCAGGGCTCTTGCGTGCTG
CAAAAGACAGCAATGAAACCCCAGCGAATCGACAAGCTGCTATTCTTTCT
GTTGATGTCTTAGTTCGTTTCCTCGGACCAGAACACCGACGAGCATTCCG
TTCCACTCTTGATGAAGCATTGGCTCTTGCAACTGAAGGCAGTGGAGATG
GAGAGGAAGGAGAGGAAGGAAATGCGTTGGTACGTGCTGGTGCATGTGTG
TTGCTTGGTTCCTTGGCTGCGATTTTGGGA
back to top