mRNA_M-pyrifera_M_contig109242.1929.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109242.1929.1
Unique NamemRNA_M-pyrifera_M_contig109242.1929.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109242.1929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109242contigM-pyrifera_M_contig109242:5..595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size516
Cds size513
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109242.1929.1prot_M-pyrifera_M_contig109242.1929.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109242 5..592 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815602.2911258-CDS-M-pyrifera_M_contig109242:4..2241622815602.2911258-CDS-M-pyrifera_M_contig109242:4..224Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109242 5..224 -
1692277482.6906426-CDS-M-pyrifera_M_contig109242:4..2241692277482.6906426-CDS-M-pyrifera_M_contig109242:4..224Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109242 5..224 -
1622815602.3032424-CDS-M-pyrifera_M_contig109242:299..5921622815602.3032424-CDS-M-pyrifera_M_contig109242:299..592Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109242 300..592 -
1692277482.705094-CDS-M-pyrifera_M_contig109242:299..5921692277482.705094-CDS-M-pyrifera_M_contig109242:299..592Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109242 300..592 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815602.316451-UTR-M-pyrifera_M_contig109242:592..5951622815602.316451-UTR-M-pyrifera_M_contig109242:592..595Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109242 593..595 -
1692277482.7166665-UTR-M-pyrifera_M_contig109242:592..5951692277482.7166665-UTR-M-pyrifera_M_contig109242:592..595Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109242 593..595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109242.1929.1

>prot_M-pyrifera_M_contig109242.1929.1 ID=prot_M-pyrifera_M_contig109242.1929.1|Name=mRNA_M-pyrifera_M_contig109242.1929.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=171bp
MNSDLYFIPILRRDIAEAHPHVDWSAALQEIVEIGKDEKRSPGLDMFSRF
IAVVRESPGFPVPEDDEVNADEPFLDEGLDTPAEEESPKYVEPIGSIFKV
VIRGIQPGAYELTLFSGRLAWDATLRAADLLWGEGDSDEPLRMAADVEGL
SVERPTRQWRVLNDCLSISVF
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mRNA from alignment at M-pyrifera_M_contig109242:5..595-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109242.1929.1 ID=mRNA_M-pyrifera_M_contig109242.1929.1|Name=mRNA_M-pyrifera_M_contig109242.1929.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=591bp|location=Sequence derived from alignment at M-pyrifera_M_contig109242:5..595- (Macrocystis pyrifera P11B4 male)
GCAATGAATTCCGATCTCTACTTCATTCCAATTCTGCGACGAGACATTGC
AGAAGCACATCCGCATGTCGATTGGTCCGCTGCTCTTCAAGAGATAGTCG
AGATAGGCAAAGATGAGAAGCGGAGCCCTGGCCTCGATATGTTTTCACGC
TTTATAGCTGTTGTCCGTGAGAGCCCAGGATTTCCAGTGCCAGAGGACGA
TGAAGTTAATGCAGATGAGCCTTTTCTCGATGAAGGTCTCGACACCCCCG
CCGAGGAAGAATCTCCGAAATACGTCGAGCCGATTGGTTCGATCTTGTCC
AGACCAAACATCTTGTACCTGGAAGGCCCTGACCAAGTGCCGAATACGAT
TGCTCTTGGCCCGGAACAAAGCAAGGTAGTTATTCGGGGTATCCAACCGG
GCGCATACGAGTTGACCCTGTTTTCAGGCCGTCTCGCTTGGGATGCAACG
CTAAGAGCCGCTGATTTGCTCTGGGGTGAGGGTGATAGTGACGAGCCGTT
ACGCATGGCCGCCGACGTCGAAGGGCTAAGTGTAGAACGGCCCACGCGTC
AGTGGAGGGTGCTTAACGACTGCCTATCCATATCCGTATTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109242:5..595-

>mRNA_M-pyrifera_M_contig109242.1929.1 ID=mRNA_M-pyrifera_M_contig109242.1929.1|Name=mRNA_M-pyrifera_M_contig109242.1929.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1026bp|location=Sequence derived from alignment at M-pyrifera_M_contig109242:5..595- (Macrocystis pyrifera P11B4 male)
ATGAATTCCGATCTCTACTTCATTCCAATTCTGCGACGAGACATTGCAGA
AGCACATCCGCATGTCGATTGGTCCGCTGCTCTTCAAGAGATAGTCGAGA
TAGGCAAAGATGAGAAGCGGAGCCCTGGCCTCGATATGTTTTCACGCTTT
ATAGCTGTTGTCCGTGAGAGCCCAGGATTTCCAGTGCCAGAGGACGATGA
AGTTAATGCAGATGAGCCTTTTCTCGATGAAGGTCTCGACACCCCCGCCG
AGGAAGAATCTCCGAAATACGTCGAGCCGATTGGTTCGATCTTATGAATT
CCGATCTCTACTTCATTCCAATTCTGCGACGAGACATTGCAGAAGCACAT
CCGCATGTCGATTGGTCCGCTGCTCTTCAAGAGATAGTCGAGATAGGCAA
AGATGAGAAGCGGAGCCCTGGCCTCGATATGTTTTCACGCTTTATAGCTG
TTGTCCGTGAGAGCCCAGGATTTCCAGTGCCAGAGGACGATGAAGTTAAT
GCAGATGAGCCTTTTCTCGATGAAGGTCTCGACACCCCCGCCGAGGAAGA
ATCTCCGAAATACGTCGAGCCGATTGGTTCGATCTTCAAGGTAGTTATTC
GGGGTATCCAACCGGGCGCATACGAGTTGACCCTGTTTTCAGGCCGTCTC
GCTTGGGATGCAACGCTAAGAGCCGCTGATTTGCTCTGGGGTGAGGGTGA
TAGTGACGAGCCGTTACGCATGGCCGCCGACGTCGAAGGGCTAAGTGTAG
AACGGCCCACGCGTCAGTGGAGGGTGCTTAACGACTGCCTATCCATATCC
GTATTCCAAGGTAGTTATTCGGGGTATCCAACCGGGCGCATACGAGTTGA
CCCTGTTTTCAGGCCGTCTCGCTTGGGATGCAACGCTAAGAGCCGCTGAT
TTGCTCTGGGGTGAGGGTGATAGTGACGAGCCGTTACGCATGGCCGCCGA
CGTCGAAGGGCTAAGTGTAGAACGGCCCACGCGTCAGTGGAGGGTGCTTA
ACGACTGCCTATCCATATCCGTATTC
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